Wall clock time and date at job start Tue Mar 31 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46907 * 2 1 4 4 H 1.09008 * 109.46890 * 305.72011 * 3 2 1 5 5 O 1.42899 * 109.47069 * 65.72404 * 3 2 1 6 6 C 1.42901 * 113.99850 * 260.19788 * 5 3 2 7 7 C 1.53001 * 109.47000 * 175.49621 * 6 5 3 8 8 C 1.52999 * 109.46906 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46906 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46906 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46808 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00474 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99808 * 180.02562 * 11 10 9 14 14 N 1.31521 * 120.00051 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 120.00164 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.46818 * 90.00091 * 15 13 11 17 17 H 1.48502 * 109.47172 * 210.00035 * 15 13 11 18 18 H 1.48498 * 109.46828 * 329.99718 * 15 13 11 19 19 C 1.53005 * 109.47022 * 185.72690 * 3 2 1 20 20 C 1.52997 * 109.46755 * 299.99661 * 19 3 2 21 21 C 1.53001 * 109.46906 * 180.02562 * 20 19 3 22 22 C 1.52995 * 109.47272 * 59.99864 * 21 20 19 23 23 C 1.52995 * 109.47422 * 300.00265 * 22 21 20 24 24 C 1.52998 * 109.46870 * 180.02562 * 19 3 2 25 25 H 1.09010 * 109.46906 * 294.36259 * 1 2 3 26 26 H 1.09001 * 109.46814 * 174.37597 * 1 2 3 27 27 H 1.08990 * 109.47895 * 54.36722 * 1 2 3 28 28 H 1.08999 * 109.47349 * 119.99758 * 2 1 3 29 29 H 1.09000 * 109.47159 * 240.00295 * 2 1 3 30 30 H 1.09004 * 109.47286 * 295.49752 * 6 5 3 31 31 H 1.08998 * 109.47263 * 55.49140 * 6 5 3 32 32 H 1.08990 * 109.47347 * 300.00078 * 7 6 5 33 33 H 1.09000 * 109.46808 * 60.00281 * 7 6 5 34 34 H 1.09004 * 109.47462 * 300.00182 * 8 7 6 35 35 H 1.09000 * 109.47029 * 60.00574 * 8 7 6 36 36 H 1.08998 * 109.47209 * 299.99901 * 9 8 7 37 37 H 1.09000 * 109.46808 * 60.00439 * 9 8 7 38 38 H 1.09004 * 109.47462 * 300.00182 * 10 9 8 39 39 H 1.09000 * 109.47029 * 60.00574 * 10 9 8 40 40 H 0.96999 * 119.99843 * 179.97438 * 14 13 11 41 41 H 1.08996 * 109.47231 * 60.00073 * 19 3 2 42 42 H 1.09005 * 109.47533 * 300.00238 * 20 19 3 43 43 H 1.09001 * 109.47189 * 60.00411 * 20 19 3 44 44 H 1.09004 * 109.47302 * 299.99854 * 21 20 19 45 45 H 1.09006 * 109.47175 * 180.02562 * 21 20 19 46 46 H 1.08998 * 109.47342 * 179.97438 * 22 21 20 47 47 H 1.09005 * 109.46796 * 60.00307 * 22 21 20 48 48 H 1.09005 * 109.47169 * 299.99813 * 23 22 21 49 49 H 1.09001 * 109.47345 * 179.97438 * 23 22 21 50 50 H 1.09006 * 109.47163 * 299.99751 * 24 19 3 51 51 H 1.08994 * 109.47325 * 59.99477 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9851 -0.8344 5 8 1.6765 2.0763 1.2281 6 6 0.5216 2.9123 1.1312 7 6 0.1604 3.4459 2.5189 8 6 -1.0758 4.3415 2.4150 9 6 -1.4366 4.8756 3.8026 10 6 -2.6724 5.7717 3.6987 11 6 -3.0281 6.2972 5.0655 12 1 -2.4322 6.0203 5.9225 13 6 -4.1144 7.1318 5.2219 14 7 -4.4247 7.5909 6.4147 15 14 -5.1457 7.6104 3.7397 16 1 -6.2424 6.6253 3.5608 17 1 -5.7239 8.9613 3.9543 18 1 -4.2905 7.6252 2.5257 19 6 3.5632 1.4450 -0.1439 20 6 4.1873 0.6835 1.0271 21 6 5.7105 0.6864 0.8836 22 6 6.2200 2.1291 0.8838 23 6 5.5959 2.8906 -0.2872 24 6 4.0732 2.8875 -0.1433 25 1 -0.3633 0.4240 0.9362 26 1 -0.3633 -1.0227 -0.1007 27 1 -0.3634 0.5986 -0.8351 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 0.7329 3.7481 0.4642 31 1 -0.3134 2.3340 0.7356 32 1 -0.0510 2.6102 3.1859 33 1 0.9954 4.0242 2.9144 34 1 -0.8640 5.1773 1.7482 35 1 -1.9110 3.7635 2.0194 36 1 -1.6483 4.0401 4.4698 37 1 -0.6013 5.4537 4.1979 38 1 -2.4603 6.6072 3.0315 39 1 -3.5078 5.1940 3.3032 40 1 -5.1887 8.1783 6.5247 41 1 3.8404 0.9617 -1.0807 42 1 3.9100 1.1669 1.9640 43 1 3.8240 -0.3442 1.0272 44 1 5.9881 0.2033 -0.0532 45 1 6.1551 0.1435 1.7177 46 1 7.3052 2.1312 0.7820 47 1 5.9424 2.6122 1.8207 48 1 5.8735 2.4075 -1.2241 49 1 5.9586 3.9185 -0.2867 50 1 3.6285 3.4305 -0.9774 51 1 3.7959 3.3705 0.7936 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224374926.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:36 Heat of formation + Delta-G solvation = -114.202521 kcal Electronic energy + Delta-G solvation = -22667.638508 eV Core-core repulsion = 19564.392543 eV Total energy + Delta-G solvation = -3103.245965 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.76829 -37.59280 -35.50709 -33.74827 -32.61074 -31.31686 -30.89508 -30.41928 -26.98324 -25.66676 -23.31890 -23.05796 -22.14425 -21.15639 -20.46523 -20.04620 -19.78993 -16.80705 -16.52228 -16.22606 -15.76152 -14.82046 -14.72348 -14.32247 -14.26605 -14.14903 -14.03933 -13.53461 -13.29285 -13.04500 -12.72730 -12.44207 -12.35917 -12.21168 -11.98293 -11.85189 -11.60420 -11.46337 -11.42047 -11.27014 -11.13845 -10.98820 -10.86832 -10.67195 -10.52615 -10.48576 -10.24040 -10.13282 -9.85628 -9.65467 -9.43524 -9.34024 -9.12044 -8.50092 -6.00642 -3.98069 3.32798 3.39846 3.44148 3.63223 4.34007 4.45345 4.48432 4.53558 4.78717 4.84535 4.92556 5.02448 5.10486 5.12966 5.20315 5.22985 5.30439 5.33397 5.33576 5.36185 5.41443 5.47326 5.49681 5.59629 5.62372 5.68960 5.73357 5.76695 5.78963 5.90942 5.95220 6.00054 6.02585 6.05441 6.06136 6.10479 6.16174 6.24866 6.33675 6.34450 6.45532 6.69973 6.79246 6.99386 7.27646 7.37675 7.50284 7.84630 8.59099 9.05102 9.62326 11.13047 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.023657 B = 0.002632 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.317268 B =10636.613371 C =11185.733047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.142 4.142 3 C 0.093 3.907 4 H 0.058 0.942 5 O -0.374 6.374 6 C 0.058 3.942 7 C -0.116 4.116 8 C -0.118 4.118 9 C -0.101 4.101 10 C -0.015 4.015 11 C -0.519 4.519 12 H 0.071 0.929 13 C 0.064 3.936 14 N -0.906 5.906 15 Si 0.881 3.119 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.266 1.266 19 C -0.084 4.084 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.114 4.114 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.014 0.986 39 H 0.010 0.990 40 H 0.262 0.738 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.060 0.940 50 H 0.056 0.944 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.132 -15.716 -17.433 30.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.180 4.180 3 C 0.035 3.965 4 H 0.076 0.924 5 O -0.293 6.293 6 C -0.019 4.019 7 C -0.153 4.153 8 C -0.156 4.156 9 C -0.139 4.139 10 C -0.053 4.053 11 C -0.557 4.557 12 H 0.089 0.911 13 C -0.137 4.137 14 N -0.545 5.545 15 Si 0.708 3.292 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.190 1.190 19 C -0.102 4.102 20 C -0.148 4.148 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.152 4.152 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.074 0.926 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 19.104 -15.623 -17.165 30.061 hybrid contribution -0.855 0.372 -0.952 1.333 sum 18.249 -15.251 -18.117 29.897 Atomic orbital electron populations 1.21862 0.95729 1.01636 1.02180 1.22037 0.96348 0.97101 1.02488 1.22141 0.94358 0.92699 0.87323 0.92424 1.87912 1.46453 1.63211 1.31756 1.22763 0.87628 0.92775 0.98687 1.21559 0.98797 0.99764 0.95208 1.21618 0.95986 0.98285 0.99711 1.21437 0.99310 0.99209 0.93949 1.19589 0.93270 0.94715 0.97680 1.21200 1.12741 1.28413 0.93363 0.91090 1.25059 0.97272 0.95689 0.95665 1.69927 1.28273 1.34264 1.22044 0.86759 0.80703 0.77785 0.83917 1.20353 1.21448 1.19027 1.21330 0.93212 0.96711 0.98995 1.21542 0.94287 0.99945 0.99075 1.21548 0.96187 0.96605 1.01372 1.21533 0.99397 0.95854 0.98983 1.21511 0.95670 1.00059 0.98322 1.21530 0.95063 0.96049 1.02523 0.91852 0.92754 0.93061 0.90828 0.91544 0.93834 0.93189 0.91447 0.91441 0.92513 0.92535 0.92844 0.92816 0.96764 0.97212 0.92817 0.90766 0.90865 0.92080 0.92450 0.92230 0.92452 0.91827 0.92399 0.92166 0.92559 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.71 37.16 0.32 -1.07 16 2 C -0.14 -1.21 5.11 -26.73 -0.14 -1.34 16 3 C 0.09 0.87 2.00 -26.72 -0.05 0.82 16 4 H 0.06 0.53 7.71 -51.92 -0.40 0.13 16 5 O -0.37 -4.38 8.45 -35.23 -0.30 -4.68 16 6 C 0.06 0.69 5.32 37.16 0.20 0.89 16 7 C -0.12 -1.60 5.58 -26.73 -0.15 -1.75 16 8 C -0.12 -1.89 5.21 -26.73 -0.14 -2.03 16 9 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 10 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 11 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 12 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 13 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 14 N -0.91 -28.51 13.96 55.43 0.77 -27.74 16 15 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 19 C -0.08 -0.71 2.08 -90.62 -0.19 -0.89 16 20 C -0.11 -0.95 4.71 -26.73 -0.13 -1.07 16 21 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 22 C -0.12 -0.92 5.92 -26.74 -0.16 -1.08 16 23 C -0.12 -0.91 5.92 -26.76 -0.16 -1.07 16 24 C -0.11 -1.00 5.05 -26.76 -0.14 -1.14 16 25 H 0.06 0.65 6.65 -51.92 -0.35 0.30 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.66 6.75 -51.93 -0.35 0.31 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.57 5.88 -51.93 -0.31 0.26 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 39 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 43 H 0.06 0.50 6.56 -51.93 -0.34 0.15 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -30.53 383.04 -10.49 -41.01 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -10.50 Total: -4.64 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: -1.56 Total: -27.21 kcal Atomic # 7 Polarization: -28.51 SS G_CDS: 0.77 Total: -27.74 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.30 Total: -4.68 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.53 -10.49 -41.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224374926.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.188 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds