Wall clock time and date at job start Tue Mar 31 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47042 * 2 1 4 4 C 1.52995 * 109.47375 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46950 * 55.00115 * 4 3 2 6 6 C 1.53004 * 109.47673 * 295.00526 * 4 3 2 7 7 C 1.52991 * 109.47431 * 179.97438 * 6 4 3 8 8 C 1.53008 * 109.47115 * 60.00240 * 7 6 4 9 9 C 1.53007 * 109.46729 * 299.99616 * 8 7 6 10 10 C 1.52999 * 109.47330 * 174.99995 * 4 3 2 11 11 H 1.09001 * 109.47343 * 300.00212 * 10 4 3 12 12 O 1.42899 * 109.46787 * 60.00455 * 10 4 3 13 13 C 1.42900 * 113.99816 * 209.99683 * 12 10 4 14 14 C 1.53005 * 109.47304 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47452 * 180.02562 * 14 13 12 16 16 C 1.52992 * 109.47482 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47482 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47432 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46890 * 120.00210 * 22 20 18 25 25 H 1.48501 * 109.47062 * 240.00257 * 22 20 18 26 26 H 1.09005 * 109.46805 * 299.99353 * 1 2 3 27 27 H 1.08996 * 109.47193 * 59.99715 * 1 2 3 28 28 H 1.09002 * 109.46679 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47245 * 240.00405 * 2 1 3 30 30 H 1.09004 * 109.47412 * 120.00120 * 2 1 3 31 31 H 1.09005 * 109.46792 * 60.00639 * 3 2 1 32 32 H 1.08996 * 109.47359 * 300.00183 * 3 2 1 33 33 H 1.09003 * 109.46597 * 299.99806 * 6 4 3 34 34 H 1.09002 * 109.47038 * 59.99243 * 6 4 3 35 35 H 1.08997 * 109.47300 * 179.97438 * 7 6 4 36 36 H 1.08994 * 109.47459 * 300.00043 * 7 6 4 37 37 H 1.08994 * 109.47118 * 59.99594 * 8 7 6 38 38 H 1.08998 * 109.47069 * 180.02562 * 8 7 6 39 39 H 1.08994 * 109.47303 * 299.99865 * 9 8 7 40 40 H 1.08995 * 109.46871 * 179.97438 * 9 8 7 41 41 H 1.09002 * 109.47002 * 60.00104 * 13 12 10 42 42 H 1.09001 * 109.47588 * 299.99930 * 13 12 10 43 43 H 1.09002 * 109.46935 * 60.00150 * 14 13 12 44 44 H 1.09001 * 109.46812 * 300.00492 * 14 13 12 45 45 H 1.09002 * 109.47153 * 60.00008 * 15 14 13 46 46 H 1.09001 * 109.46832 * 300.00199 * 15 14 13 47 47 H 1.09002 * 109.47103 * 59.99753 * 16 15 14 48 48 H 1.08998 * 109.46862 * 300.00565 * 16 15 14 49 49 H 1.09002 * 109.47153 * 59.99783 * 17 16 15 50 50 H 1.09001 * 109.46832 * 299.99974 * 17 16 15 51 51 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0796 0.8331 1.3082 7 6 5.6095 0.8326 1.3085 8 6 6.1200 2.2695 1.1827 9 6 5.6104 2.8790 -0.1250 10 6 4.0799 2.8796 -0.1251 11 1 3.7170 3.3138 -1.0567 12 8 3.6032 3.6524 0.9783 13 6 3.4096 5.0361 0.6782 14 6 2.9000 5.7620 1.9250 15 6 2.6921 7.2433 1.6036 16 6 2.1832 7.9692 2.8504 17 6 1.9759 9.4507 2.5292 18 6 1.4741 10.1656 3.7572 19 1 1.3189 9.6182 4.6752 20 6 1.2140 11.5188 3.7092 21 7 1.4034 12.1854 2.5915 22 14 0.5926 12.4050 5.2316 23 1 0.4646 11.4369 6.3503 24 1 1.5530 13.4730 5.6092 25 1 -0.7331 13.0099 4.9457 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.7159 1.4226 2.1498 34 1 3.7162 -0.1907 1.3978 35 1 5.9725 0.3988 2.2402 36 1 5.9728 0.2429 0.4670 37 1 5.7566 2.8592 2.0242 38 1 7.2099 2.2691 1.1824 39 1 5.9738 2.2893 -0.9666 40 1 5.9737 3.9027 -0.2145 41 1 2.6780 5.1350 -0.1238 42 1 4.3560 5.4754 0.3629 43 1 3.6313 5.6631 2.7273 44 1 1.9535 5.3225 2.2399 45 1 1.9607 7.3418 0.8014 46 1 3.6384 7.6829 1.2884 47 1 2.9150 7.8707 3.6523 48 1 1.2371 7.5296 3.1660 49 1 1.2444 9.5496 1.7272 50 1 2.9224 9.8899 2.2139 51 1 1.2201 13.1374 2.5576 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224375766.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:13 Heat of formation + Delta-G solvation = -119.107741 kcal Electronic energy + Delta-G solvation = -22510.579262 eV Core-core repulsion = 19407.120591 eV Total energy + Delta-G solvation = -3103.458671 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.84446 -36.85285 -35.20009 -34.83895 -32.79926 -31.09239 -30.64447 -29.69872 -26.50378 -25.94113 -23.48725 -22.97842 -22.15463 -20.96203 -20.65551 -20.10323 -19.61468 -16.39840 -16.17660 -15.97368 -15.78448 -15.31318 -14.81086 -14.57916 -14.42865 -13.84815 -13.69361 -13.48692 -13.13870 -13.03597 -12.58705 -12.45895 -12.26241 -12.13231 -11.82877 -11.68060 -11.53721 -11.37603 -11.28536 -11.11449 -11.04713 -10.94793 -10.74697 -10.61398 -10.52752 -10.42188 -10.31810 -10.25436 -10.04703 -9.60467 -9.34300 -9.22149 -8.96549 -8.31277 -5.96331 -3.98196 3.33195 3.40395 3.45111 3.67359 4.37317 4.49214 4.52523 4.60163 4.81689 4.86318 4.96903 5.04352 5.12538 5.16134 5.18224 5.30264 5.32811 5.35004 5.39409 5.45478 5.47948 5.56482 5.59808 5.63003 5.69720 5.70468 5.76684 5.80396 5.83825 5.89857 5.97885 6.03852 6.06312 6.09836 6.15073 6.19350 6.22412 6.33929 6.37617 6.46514 6.56705 6.86026 6.99592 7.21698 7.32202 7.73346 7.88935 8.05057 8.48464 9.09659 9.65686 11.15165 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.002517 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.871831 B =11121.711466 C =11826.451389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.080 4.080 5 H 0.075 0.925 6 C -0.111 4.111 7 C -0.118 4.118 8 C -0.114 4.114 9 C -0.141 4.141 10 C 0.094 3.906 11 H 0.056 0.944 12 O -0.373 6.373 13 C 0.062 3.938 14 C -0.114 4.114 15 C -0.116 4.116 16 C -0.109 4.109 17 C 0.019 3.981 18 C -0.518 4.518 19 H 0.055 0.945 20 C 0.054 3.946 21 N -0.897 5.897 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.047 0.953 48 H 0.047 0.953 49 H 0.014 0.986 50 H 0.014 0.986 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.144 -26.235 -7.855 28.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.099 4.099 5 H 0.093 0.907 6 C -0.148 4.148 7 C -0.155 4.155 8 C -0.152 4.152 9 C -0.179 4.179 10 C 0.036 3.964 11 H 0.074 0.926 12 O -0.293 6.293 13 C -0.015 4.015 14 C -0.152 4.152 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.018 4.018 18 C -0.557 4.557 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.033 0.967 50 H 0.033 0.967 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.091 -26.138 -7.744 27.933 hybrid contribution -0.237 0.816 0.409 0.943 sum 5.853 -25.322 -7.334 27.005 Atomic orbital electron populations 1.21779 0.96019 1.01315 1.01968 1.21580 0.95748 0.97151 1.01735 1.21606 0.94364 0.96487 1.02673 1.21259 0.95651 0.94311 0.98665 0.90683 1.21547 0.95044 1.00317 0.97931 1.21522 0.96008 0.96778 1.01235 1.21414 0.99388 0.96155 0.98215 1.22029 0.96161 1.01248 0.98456 1.22053 0.92879 0.91822 0.89658 0.92608 1.87914 1.86261 1.19554 1.35549 1.22642 0.99034 0.81380 0.98396 1.21568 1.01571 0.95527 0.96543 1.21584 1.01059 0.92768 0.99929 1.21605 0.99320 0.98524 0.95214 1.19115 0.96842 0.89047 0.96766 1.21340 1.43564 0.93458 0.97313 0.92679 1.25040 0.95813 0.97747 0.96008 1.69979 1.49447 1.08360 1.25890 0.86553 0.78471 0.79702 0.83388 1.19732 1.21041 1.21035 0.92596 0.92868 0.93042 0.92475 0.91854 0.90890 0.92406 0.90904 0.92227 0.92243 0.92574 0.91000 0.92594 0.91548 0.91849 0.93724 0.93752 0.91602 0.91594 0.92514 0.92527 0.93462 0.93454 0.96719 0.96723 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.79 16 2 C -0.12 -0.95 5.69 -26.73 -0.15 -1.10 16 3 C -0.11 -1.01 4.47 -26.73 -0.12 -1.13 16 4 C -0.08 -0.70 2.02 -90.62 -0.18 -0.88 16 5 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 6 C -0.11 -0.97 4.81 -26.73 -0.13 -1.09 16 7 C -0.12 -0.97 5.92 -26.73 -0.16 -1.12 16 8 C -0.11 -1.05 5.78 -26.72 -0.15 -1.20 16 9 C -0.14 -1.29 5.63 -26.70 -0.15 -1.44 16 10 C 0.09 0.93 2.35 -26.71 -0.06 0.87 16 11 H 0.06 0.54 7.79 -51.93 -0.40 0.13 16 12 O -0.37 -4.56 8.06 -35.23 -0.28 -4.84 16 13 C 0.06 0.78 5.75 37.16 0.21 1.00 16 14 C -0.11 -1.67 5.58 -26.73 -0.15 -1.81 16 15 C -0.12 -1.99 5.21 -26.74 -0.14 -2.13 16 16 C -0.11 -2.31 5.15 -26.74 -0.14 -2.44 16 17 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 18 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 19 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 20 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 22 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.48 6.56 -51.93 -0.34 0.13 16 31 H 0.07 0.77 7.83 -51.93 -0.41 0.36 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 34 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.78 7.68 -51.93 -0.40 0.39 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 41 H 0.04 0.54 8.09 -51.93 -0.42 0.12 16 42 H 0.04 0.54 7.87 -51.93 -0.41 0.13 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 390.59 15.07 5.89 5.89 Total: -1.00 -30.09 390.59 -10.87 -40.95 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -10.68 Total: -5.44 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -1.50 Total: -26.81 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.74 Total: -26.78 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.28 Total: -4.84 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.09 -10.87 -40.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224375766.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.153 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds