Wall clock time and date at job start Tue Mar 31 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47346 * 305.00346 * 4 3 2 6 6 C 1.53004 * 109.47236 * 65.00086 * 4 3 2 7 7 C 1.52997 * 109.47236 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47504 * 300.00184 * 7 6 4 9 9 C 1.53004 * 109.47024 * 59.99687 * 8 7 6 10 10 C 1.52997 * 109.47504 * 185.00270 * 4 3 2 11 11 H 1.09004 * 109.46881 * 300.00361 * 10 4 3 12 12 O 1.42899 * 109.46835 * 59.99931 * 10 4 3 13 13 C 1.42904 * 113.99749 * 210.00325 * 12 10 4 14 14 C 1.52998 * 109.47064 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.47324 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47324 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47165 * 180.02562 * 16 15 14 18 18 C 1.50693 * 109.47430 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99764 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00600 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99587 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00618 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46955 * 59.99781 * 22 20 18 24 24 H 1.48496 * 109.47367 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47007 * 300.00032 * 22 20 18 26 26 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 27 27 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 28 28 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 30 30 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 31 31 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 32 32 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 33 33 H 1.09001 * 109.46917 * 300.00567 * 6 4 3 34 34 H 1.09004 * 109.46741 * 59.99889 * 6 4 3 35 35 H 1.09002 * 109.47196 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.46881 * 60.00519 * 7 6 4 37 37 H 1.09004 * 109.46881 * 300.00361 * 8 7 6 38 38 H 1.09000 * 109.47400 * 180.02562 * 8 7 6 39 39 H 1.09001 * 109.46917 * 179.97438 * 9 8 7 40 40 H 1.09004 * 109.46741 * 60.00588 * 9 8 7 41 41 H 1.09003 * 109.47048 * 299.99898 * 13 12 10 42 42 H 1.09002 * 109.47427 * 59.99820 * 13 12 10 43 43 H 1.08994 * 109.47100 * 299.99773 * 14 13 12 44 44 H 1.09006 * 109.47150 * 60.00050 * 14 13 12 45 45 H 1.09003 * 109.47060 * 299.99899 * 15 14 13 46 46 H 1.09001 * 109.46769 * 59.99286 * 15 14 13 47 47 H 1.09003 * 109.46970 * 299.99954 * 16 15 14 48 48 H 1.08993 * 109.47185 * 59.99957 * 16 15 14 49 49 H 1.09004 * 109.47198 * 300.00184 * 17 16 15 50 50 H 1.09002 * 109.47456 * 59.99576 * 17 16 15 51 51 H 0.97000 * 119.99767 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0794 0.8332 -1.3083 7 6 5.6094 0.8326 -1.3087 8 6 6.1200 2.2693 -1.1826 9 6 5.6105 2.8788 0.1251 10 6 4.0800 2.8795 0.1251 11 1 3.7163 3.4691 -0.7164 12 8 3.6042 3.4486 1.3465 13 6 3.4104 4.8634 1.2918 14 6 2.9031 5.3614 2.6466 15 6 2.6962 6.8763 2.5882 16 6 2.1884 7.3743 3.9428 17 6 1.9809 8.8890 3.8842 18 6 1.4813 9.3796 5.2186 19 1 1.3268 8.6808 6.0275 20 6 1.2214 10.7205 5.4070 21 7 1.4091 11.5713 4.4218 22 14 0.6014 11.3285 7.0608 23 1 1.5987 11.0052 8.1126 24 1 0.4002 12.7987 7.0040 25 1 -0.6880 10.6649 7.3805 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6765 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.7160 -0.1906 -1.3979 34 1 3.7157 1.4228 -2.1499 35 1 5.9724 0.3989 -2.2405 36 1 5.9727 0.2427 -0.4672 37 1 5.7566 2.8592 -2.0241 38 1 7.2100 2.2690 -1.1833 39 1 5.9747 3.9022 0.2151 40 1 5.9739 2.2889 0.9666 41 1 4.3566 5.3509 1.0569 42 1 2.6782 5.1003 0.5198 43 1 1.9571 4.8740 2.8818 44 1 3.6357 5.1246 3.4182 45 1 3.6426 7.3635 2.3531 46 1 1.9640 7.1135 1.8164 47 1 1.2419 6.8871 4.1774 48 1 2.9203 7.1371 4.7148 49 1 2.9271 9.3765 3.6493 50 1 1.2487 9.1259 3.1122 51 1 1.2266 12.5147 4.5544 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224375767.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:15 Heat of formation + Delta-G solvation = -120.939283 kcal Electronic energy + Delta-G solvation = -22274.904714 eV Core-core repulsion = 19171.366621 eV Total energy + Delta-G solvation = -3103.538093 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.78608 -37.09613 -35.18223 -35.02650 -32.82800 -31.13237 -30.68978 -29.53742 -26.50510 -25.97416 -23.57337 -22.91385 -21.99641 -21.06899 -20.72656 -20.01664 -19.96906 -16.79286 -16.12467 -15.87730 -15.61099 -15.37652 -14.72168 -14.60003 -14.43779 -14.04563 -13.64123 -13.56831 -13.28631 -13.16368 -12.75088 -12.52388 -12.20635 -12.07772 -11.79374 -11.67164 -11.51642 -11.34753 -11.30574 -11.18032 -11.06684 -10.94308 -10.88793 -10.67481 -10.51447 -10.46480 -10.36156 -10.29237 -10.24151 -9.59774 -9.36277 -9.21797 -8.98183 -8.30221 -5.95644 -3.97690 3.36087 3.39966 3.42857 3.59058 4.32419 4.43397 4.49519 4.60999 4.73046 4.85221 4.93531 4.97244 5.00498 5.11119 5.17407 5.21783 5.24139 5.32696 5.37255 5.39820 5.42259 5.52150 5.55955 5.63442 5.68153 5.70157 5.73654 5.77587 5.81387 5.83551 5.89400 5.90004 5.99269 6.03127 6.08478 6.14049 6.20586 6.25740 6.33754 6.46370 6.56507 6.86150 6.99712 7.21918 7.30644 7.73193 7.89306 8.05526 8.48821 9.09668 9.66004 11.15772 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.002395 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.414619 B =11687.930610 C =12600.787656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.082 4.082 5 H 0.076 0.924 6 C -0.114 4.114 7 C -0.122 4.122 8 C -0.117 4.117 9 C -0.142 4.142 10 C 0.095 3.905 11 H 0.057 0.943 12 O -0.381 6.381 13 C 0.063 3.937 14 C -0.116 4.116 15 C -0.116 4.116 16 C -0.109 4.109 17 C 0.020 3.980 18 C -0.520 4.520 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.047 0.953 48 H 0.047 0.953 49 H 0.014 0.986 50 H 0.014 0.986 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.211 -24.364 -14.275 28.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.152 4.152 4 C -0.100 4.100 5 H 0.095 0.905 6 C -0.151 4.151 7 C -0.159 4.159 8 C -0.155 4.155 9 C -0.180 4.180 10 C 0.037 3.963 11 H 0.075 0.925 12 O -0.300 6.300 13 C -0.013 4.013 14 C -0.153 4.153 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.017 4.017 18 C -0.558 4.558 19 H 0.072 0.928 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.033 0.967 50 H 0.033 0.967 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.156 -24.277 -14.155 28.768 hybrid contribution -0.239 0.700 0.647 0.983 sum 5.917 -23.576 -13.508 27.809 Atomic orbital electron populations 1.21780 0.96010 1.01336 1.01962 1.21568 0.95757 0.97089 1.01732 1.21616 0.94305 0.96665 1.02644 1.21226 0.95699 0.94849 0.98273 0.90519 1.21630 0.95335 1.01077 0.97077 1.21573 0.95746 0.96849 1.01758 1.21498 1.00371 0.96152 0.97471 1.22055 0.96170 1.01505 0.98262 1.22066 0.92792 0.94178 0.87220 0.92516 1.87905 1.86361 1.21564 1.34165 1.22648 0.99121 0.80678 0.98902 1.21584 1.01639 0.96725 0.95367 1.21589 1.01087 0.92721 0.99947 1.21607 0.99333 0.99712 0.94029 1.19104 0.96841 0.88894 0.96864 1.21263 1.43859 0.92713 0.97987 0.92788 1.25037 0.95790 0.97049 0.96690 1.69961 1.49337 1.02847 1.31543 0.86662 0.79404 0.77542 0.84416 1.20253 1.21317 1.20256 0.92585 0.92873 0.93024 0.92158 0.92149 0.92402 0.90791 0.91290 0.91945 0.92004 0.91863 0.92020 0.91809 0.91764 0.91173 0.93674 0.93627 0.91544 0.91549 0.92491 0.92491 0.93441 0.93440 0.96728 0.96720 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -0.96 5.69 -26.73 -0.15 -1.12 16 3 C -0.11 -1.04 4.61 -26.73 -0.12 -1.16 16 4 C -0.08 -0.73 1.93 -90.62 -0.17 -0.90 16 5 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 6 C -0.11 -0.81 4.96 -26.73 -0.13 -0.94 16 7 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 8 C -0.12 -0.88 5.92 -26.73 -0.16 -1.03 16 9 C -0.14 -1.32 5.54 -26.70 -0.15 -1.47 16 10 C 0.10 0.98 2.05 -26.71 -0.05 0.92 16 11 H 0.06 0.58 7.79 -51.93 -0.40 0.17 16 12 O -0.38 -4.91 9.23 -35.23 -0.33 -5.24 16 13 C 0.06 0.82 5.75 37.16 0.21 1.03 16 14 C -0.12 -1.71 5.58 -26.73 -0.15 -1.86 16 15 C -0.12 -2.00 5.21 -26.73 -0.14 -2.14 16 16 C -0.11 -2.32 5.15 -26.74 -0.14 -2.46 16 17 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 18 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 19 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 22 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.81 7.54 -51.93 -0.39 0.42 16 33 H 0.07 0.44 6.56 -51.93 -0.34 0.10 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.63 7.88 -51.93 -0.41 0.22 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.04 0.56 7.88 -51.93 -0.41 0.15 16 42 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 51 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 392.32 15.07 5.91 5.91 Total: -1.00 -30.29 392.32 -10.91 -41.19 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -10.71 Total: -5.65 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -1.50 Total: -26.47 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.74 Total: -26.81 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.33 Total: -5.24 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.29 -10.91 -41.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224375767.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.744 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds