Wall clock time and date at job start Tue Mar 31 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47272 * 2 1 4 4 C 1.52996 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47460 * 55.00027 * 4 3 2 6 6 C 1.52998 * 109.47220 * 294.99845 * 4 3 2 7 7 C 1.52998 * 109.47368 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.46707 * 60.00486 * 7 6 4 9 9 C 1.52998 * 109.46809 * 299.99856 * 8 7 6 10 10 C 1.52998 * 109.47368 * 60.00548 * 9 8 7 11 11 H 1.08992 * 109.47281 * 59.99309 * 10 9 8 12 12 O 1.42899 * 109.47180 * 179.97438 * 10 9 8 13 13 C 1.42895 * 114.00173 * 269.99383 * 12 10 9 14 14 C 1.52993 * 109.47604 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.47478 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.47000 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.46626 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.46866 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99963 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00270 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00302 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99832 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47310 * 89.99428 * 22 20 18 24 24 H 1.48491 * 109.47296 * 209.99911 * 22 20 18 25 25 H 1.48502 * 109.46905 * 329.99956 * 22 20 18 26 26 H 1.09004 * 109.47537 * 60.00115 * 1 2 3 27 27 H 1.09003 * 109.47260 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47319 * 299.99765 * 1 2 3 29 29 H 1.09011 * 109.46995 * 240.00019 * 2 1 3 30 30 H 1.09000 * 109.46984 * 120.00623 * 2 1 3 31 31 H 1.09004 * 109.47153 * 59.99676 * 3 2 1 32 32 H 1.09004 * 109.46990 * 299.99877 * 3 2 1 33 33 H 1.09001 * 109.46917 * 60.00313 * 6 4 3 34 34 H 1.08992 * 109.47483 * 300.00207 * 6 4 3 35 35 H 1.08997 * 109.47717 * 300.00852 * 7 6 4 36 36 H 1.08997 * 109.47271 * 180.02562 * 7 6 4 37 37 H 1.09001 * 109.46937 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.47464 * 59.99894 * 8 7 6 39 39 H 1.09003 * 109.47784 * 299.99622 * 9 8 7 40 40 H 1.09006 * 109.46834 * 180.02562 * 9 8 7 41 41 H 1.09004 * 109.46851 * 60.00172 * 13 12 10 42 42 H 1.09004 * 109.47492 * 300.00353 * 13 12 10 43 43 H 1.09004 * 109.46862 * 60.00195 * 14 13 12 44 44 H 1.09000 * 109.47250 * 300.00218 * 14 13 12 45 45 H 1.08993 * 109.46765 * 59.99818 * 15 14 13 46 46 H 1.09000 * 109.46866 * 300.00218 * 15 14 13 47 47 H 1.08993 * 109.47839 * 60.00073 * 16 15 14 48 48 H 1.09000 * 109.47160 * 299.99635 * 16 15 14 49 49 H 1.09000 * 109.47050 * 299.99699 * 17 16 15 50 50 H 1.09001 * 109.46801 * 59.99811 * 17 16 15 51 51 H 0.97002 * 119.99998 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4424 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0794 0.8330 1.3083 7 6 5.6094 0.8324 1.3087 8 6 6.1199 2.2693 1.1828 9 6 5.6104 2.8787 -0.1249 10 6 4.0805 2.8793 -0.1253 11 1 3.7171 3.4690 0.7162 12 8 3.6047 3.4490 -1.3464 13 6 3.4113 4.8638 -1.2912 14 6 2.9041 5.3625 -2.6457 15 6 2.6977 6.8774 -2.5868 16 6 2.1898 7.3760 -3.9412 17 6 1.9841 8.8910 -3.8823 18 6 1.4845 9.3822 -5.2165 19 1 1.3296 8.6837 -6.0256 20 6 1.2250 10.7232 -5.4044 21 7 0.7895 11.1520 -6.5689 22 14 1.4935 11.9314 -4.0052 23 1 2.8850 12.4477 -4.0570 24 1 0.5406 13.0624 -4.1380 25 1 1.2686 11.2444 -2.7080 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7161 -0.1907 1.3978 34 1 3.7158 1.4225 2.1498 35 1 5.9728 0.2427 0.4671 36 1 5.9723 0.3979 2.2401 37 1 7.2099 2.2689 1.1826 38 1 5.7566 2.8591 2.0243 39 1 5.9738 2.2890 -0.9665 40 1 5.9745 3.9022 -0.2148 41 1 4.3577 5.3509 -1.0563 42 1 2.6793 5.1007 -0.5190 43 1 1.9578 4.8754 -2.8810 44 1 3.6364 5.1257 -3.4175 45 1 3.6441 7.3641 -2.3516 46 1 1.9655 7.1146 -1.8149 47 1 1.2433 6.8893 -4.1760 48 1 2.9217 7.1388 -4.7133 49 1 1.2524 9.1286 -3.1101 50 1 2.9309 9.3774 -3.6478 51 1 0.6066 12.0954 -6.7009 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224375768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:18 Heat of formation + Delta-G solvation = -117.327199 kcal Electronic energy + Delta-G solvation = -22328.623556 eV Core-core repulsion = 19225.242095 eV Total energy + Delta-G solvation = -3103.381461 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.82756 -37.15421 -35.28256 -35.08702 -32.79137 -31.18652 -30.88773 -29.72973 -26.80293 -26.06800 -23.52102 -22.87425 -22.03164 -21.01603 -20.75689 -20.03804 -19.98415 -16.89896 -16.52351 -15.94873 -15.64658 -15.40831 -14.77308 -14.66050 -14.20801 -14.10839 -13.72174 -13.59217 -13.31311 -13.23935 -12.82956 -12.72820 -12.23517 -12.11563 -11.97328 -11.84161 -11.69240 -11.38975 -11.37651 -11.21872 -11.19266 -11.02557 -10.93332 -10.69876 -10.63800 -10.50378 -10.38555 -10.29114 -9.85534 -9.65246 -9.43287 -9.41149 -9.11915 -8.49997 -6.00473 -3.97899 3.32968 3.40003 3.44313 3.53811 4.29122 4.40133 4.48585 4.57545 4.70196 4.82135 4.90579 4.94188 4.96836 5.07167 5.11691 5.18405 5.19722 5.26617 5.33537 5.34131 5.38952 5.47894 5.48820 5.60168 5.62820 5.66347 5.67592 5.71572 5.76199 5.79529 5.85181 5.86887 5.96596 5.98350 6.04053 6.06328 6.17006 6.22587 6.24672 6.33334 6.44614 6.69959 6.79203 6.99485 7.25347 7.37805 7.50410 7.84752 8.59245 9.05220 9.62484 11.13200 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.021655 B = 0.002524 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.714341 B =11089.412024 C =11937.280950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.082 4.082 5 H 0.077 0.923 6 C -0.114 4.114 7 C -0.122 4.122 8 C -0.117 4.117 9 C -0.142 4.142 10 C 0.096 3.904 11 H 0.056 0.944 12 O -0.380 6.380 13 C 0.063 3.937 14 C -0.116 4.116 15 C -0.118 4.118 16 C -0.102 4.102 17 C -0.015 4.015 18 C -0.519 4.519 19 H 0.071 0.929 20 C 0.064 3.936 21 N -0.906 5.906 22 Si 0.881 3.119 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.266 1.266 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.014 0.986 50 H 0.010 0.990 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.683 -23.659 19.338 31.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.101 4.101 5 H 0.095 0.905 6 C -0.151 4.151 7 C -0.159 4.159 8 C -0.155 4.155 9 C -0.180 4.180 10 C 0.038 3.962 11 H 0.074 0.926 12 O -0.299 6.299 13 C -0.013 4.013 14 C -0.154 4.154 15 C -0.156 4.156 16 C -0.139 4.139 17 C -0.053 4.053 18 C -0.557 4.557 19 H 0.089 0.911 20 C -0.137 4.137 21 N -0.545 5.545 22 Si 0.708 3.292 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.190 1.190 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.032 0.968 50 H 0.028 0.972 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.586 -23.602 19.076 31.281 hybrid contribution 0.211 1.015 0.830 1.328 sum 7.797 -22.587 19.906 31.100 Atomic orbital electron populations 1.21780 0.95994 1.01365 1.01955 1.21568 0.95772 0.97061 1.01752 1.21614 0.94281 0.96701 1.02618 1.21227 0.95715 0.94810 0.98303 0.90482 1.21627 0.95333 1.01103 0.97052 1.21573 0.95745 0.96828 1.01795 1.21497 1.00382 0.96169 0.97433 1.22047 0.96156 1.01486 0.98308 1.22060 0.92810 0.94211 0.87163 0.92551 1.87907 1.86366 1.21453 1.34201 1.22634 0.99071 0.80806 0.98830 1.21568 1.01860 0.96449 0.95484 1.21620 1.01012 0.93146 0.99828 1.21438 1.00083 0.98151 0.94245 1.19591 0.96062 0.91973 0.97641 1.21199 1.43671 0.93709 0.97136 0.91087 1.25057 0.94703 0.98431 0.95498 1.69924 1.46253 1.15224 1.23097 0.86758 0.78108 0.80803 0.83486 1.20354 1.21450 1.19030 0.92568 0.93001 0.92892 0.92122 0.92157 0.92430 0.90789 0.91261 0.91961 0.91840 0.91989 0.91799 0.92038 0.91133 0.91802 0.93711 0.93662 0.91370 0.91375 0.92496 0.92491 0.92791 0.92827 0.96755 0.97202 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -0.94 5.69 -26.74 -0.15 -1.09 16 3 C -0.11 -1.00 4.61 -26.74 -0.12 -1.13 16 4 C -0.08 -0.70 1.93 -90.62 -0.17 -0.88 16 5 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 6 C -0.11 -0.78 4.96 -26.73 -0.13 -0.91 16 7 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 8 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 9 C -0.14 -1.27 5.54 -26.73 -0.15 -1.42 16 10 C 0.10 0.94 2.04 -26.73 -0.05 0.89 16 11 H 0.06 0.55 7.78 -51.93 -0.40 0.14 16 12 O -0.38 -4.73 9.23 -35.23 -0.33 -5.05 16 13 C 0.06 0.78 5.75 37.15 0.21 0.99 16 14 C -0.12 -1.63 5.58 -26.73 -0.15 -1.78 16 15 C -0.12 -1.91 5.21 -26.73 -0.14 -2.05 16 16 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 17 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 18 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 19 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 20 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 21 N -0.91 -28.53 13.96 55.43 0.77 -27.75 16 22 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.78 7.54 -51.93 -0.39 0.39 16 33 H 0.07 0.43 6.56 -51.93 -0.34 0.09 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.60 7.87 -51.93 -0.41 0.19 16 41 H 0.04 0.53 7.87 -51.93 -0.41 0.12 16 42 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 49 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 50 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 51 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 LS Contribution 388.71 15.07 5.86 5.86 Total: -1.00 -30.76 388.71 -10.53 -41.29 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -10.68 Total: -5.30 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: -1.49 Total: -26.54 kcal Atomic # 7 Polarization: -28.53 SS G_CDS: 0.77 Total: -27.75 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.33 Total: -5.05 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.76 -10.53 -41.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224375768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.041 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds