Wall clock time and date at job start Tue Mar 31 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46711 * 2 1 4 4 C 1.53006 * 109.46711 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47145 * 305.00287 * 4 3 2 6 6 C 1.52996 * 109.47273 * 64.99918 * 4 3 2 7 7 C 1.52995 * 109.47036 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47704 * 300.00271 * 7 6 4 9 9 C 1.53001 * 109.46844 * 59.99539 * 8 7 6 10 10 C 1.52994 * 109.47090 * 185.00267 * 4 3 2 11 11 H 1.09005 * 109.47143 * 60.00294 * 10 4 3 12 12 O 1.42902 * 109.47137 * 300.00018 * 10 4 3 13 13 C 1.42907 * 113.99842 * 150.00192 * 12 10 4 14 14 C 1.52995 * 109.46648 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47028 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47355 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47355 * 179.97438 * 16 15 14 18 18 C 1.50694 * 109.47168 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 H 1.08998 * 109.46904 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47187 * 299.99759 * 1 2 3 28 28 H 1.09003 * 109.46768 * 60.00069 * 1 2 3 29 29 H 1.09001 * 109.46899 * 240.00505 * 2 1 3 30 30 H 1.08994 * 109.46771 * 120.00202 * 2 1 3 31 31 H 1.09001 * 109.47027 * 60.00583 * 3 2 1 32 32 H 1.08994 * 109.47668 * 299.99653 * 3 2 1 33 33 H 1.09008 * 109.46734 * 60.00117 * 6 4 3 34 34 H 1.08993 * 109.47426 * 300.00403 * 6 4 3 35 35 H 1.09010 * 109.47086 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47073 * 60.00865 * 7 6 4 37 37 H 1.09008 * 109.47085 * 300.00280 * 8 7 6 38 38 H 1.08996 * 109.47774 * 179.97438 * 8 7 6 39 39 H 1.08997 * 109.46821 * 179.97438 * 9 8 7 40 40 H 1.09008 * 109.46675 * 60.00489 * 9 8 7 41 41 H 1.08994 * 109.47509 * 59.99836 * 13 12 10 42 42 H 1.08998 * 109.46782 * 299.99690 * 13 12 10 43 43 H 1.08994 * 109.47450 * 59.99615 * 14 13 12 44 44 H 1.09003 * 109.47517 * 299.99534 * 14 13 12 45 45 H 1.09002 * 109.46926 * 59.99969 * 15 14 13 46 46 H 1.08992 * 109.47494 * 299.99963 * 15 14 13 47 47 H 1.09002 * 109.46807 * 60.00291 * 16 15 14 48 48 H 1.08998 * 109.47285 * 299.99893 * 16 15 14 49 49 H 1.09007 * 109.46922 * 59.99890 * 17 16 15 50 50 H 1.09003 * 109.46836 * 300.00646 * 17 16 15 51 51 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0806 0.8327 -1.3063 7 6 5.6105 0.8333 -1.3059 8 6 6.1201 2.2705 -1.1804 9 6 5.6094 2.8803 0.1266 10 6 4.0799 2.8795 0.1264 11 1 3.7162 3.3139 1.0577 12 8 3.6041 3.6522 -0.9775 13 6 3.4102 5.0360 -0.6778 14 6 2.9018 5.7614 -1.9251 15 6 2.6936 7.2429 -1.6041 16 6 2.1857 7.9686 -2.8517 17 6 1.9769 9.4499 -2.5305 18 6 1.4761 10.1645 -3.7591 19 1 1.3217 9.6169 -4.6771 20 6 1.2150 11.5175 -3.7112 21 7 1.4025 12.1843 -2.5932 22 14 0.5948 12.4034 -5.2343 23 1 0.3921 13.8412 -4.9226 24 1 1.5926 12.2691 -6.3259 25 1 -0.6938 11.8044 -5.6652 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.7176 1.4221 -2.1484 34 1 3.7173 -0.1909 -1.3960 35 1 5.9743 0.3993 -2.2373 36 1 5.9739 0.2442 -0.4639 37 1 5.7567 2.8597 -2.0225 38 1 7.2100 2.2709 -1.1797 39 1 5.9728 3.9040 0.2162 40 1 5.9728 2.2912 0.9687 41 1 4.3563 5.4753 -0.3618 42 1 2.6780 5.1350 0.1235 43 1 1.9556 5.3220 -2.2407 44 1 3.6336 5.6624 -2.7268 45 1 3.6397 7.6826 -1.2883 46 1 1.9616 7.3416 -0.8027 47 1 1.2397 7.5289 -3.1678 48 1 2.9181 7.8699 -3.6529 49 1 2.9227 9.8898 -2.2140 50 1 1.2444 9.5482 -1.7293 51 1 1.2192 13.1362 -2.5597 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224375769.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:20 Heat of formation + Delta-G solvation = -119.035364 kcal Electronic energy + Delta-G solvation = -22511.144967 eV Core-core repulsion = 19407.689435 eV Total energy + Delta-G solvation = -3103.455532 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.84811 -36.85182 -35.19999 -34.83758 -32.79667 -31.09207 -30.64593 -29.69867 -26.50222 -25.94106 -23.48496 -22.97790 -22.15508 -20.96111 -20.65561 -20.10146 -19.61313 -16.39818 -16.17220 -15.97262 -15.78437 -15.31300 -14.81052 -14.57859 -14.43527 -13.84773 -13.69239 -13.48691 -13.14022 -13.03508 -12.58085 -12.45429 -12.26318 -12.12980 -11.82805 -11.68041 -11.53353 -11.37813 -11.28550 -11.11455 -11.05292 -10.91693 -10.74717 -10.61996 -10.51998 -10.44709 -10.32596 -10.25249 -10.04647 -9.59951 -9.34377 -9.21967 -8.98355 -8.30412 -5.95863 -3.97904 3.35908 3.39792 3.42695 3.67400 4.37259 4.49332 4.52698 4.60174 4.81706 4.86324 4.96982 5.04351 5.12571 5.16147 5.18284 5.30268 5.32939 5.35063 5.39615 5.45446 5.47979 5.56541 5.59817 5.63013 5.69752 5.70499 5.76735 5.80459 5.83872 5.89905 5.97896 6.03879 6.06379 6.09864 6.15132 6.19377 6.22422 6.34010 6.37623 6.46575 6.56760 6.86124 6.99633 7.21778 7.32213 7.73005 7.89144 8.05329 8.48631 9.09488 9.65790 11.15555 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.002517 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.892310 B =11120.595776 C =11825.344493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.080 4.080 5 H 0.075 0.925 6 C -0.111 4.111 7 C -0.118 4.118 8 C -0.114 4.114 9 C -0.141 4.141 10 C 0.094 3.906 11 H 0.056 0.944 12 O -0.374 6.374 13 C 0.062 3.938 14 C -0.114 4.114 15 C -0.116 4.116 16 C -0.109 4.109 17 C 0.020 3.980 18 C -0.520 4.520 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.892 3.108 23 H -0.287 1.287 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.047 0.953 48 H 0.047 0.953 49 H 0.014 0.986 50 H 0.014 0.986 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.143 -26.197 7.873 28.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.099 4.099 5 H 0.093 0.907 6 C -0.148 4.148 7 C -0.155 4.155 8 C -0.152 4.152 9 C -0.179 4.179 10 C 0.036 3.964 11 H 0.074 0.926 12 O -0.293 6.293 13 C -0.014 4.014 14 C -0.152 4.152 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.017 4.017 18 C -0.559 4.559 19 H 0.072 0.928 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.720 3.280 23 H -0.213 1.213 24 H -0.203 1.203 25 H -0.203 1.203 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.033 0.967 50 H 0.033 0.967 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.089 -26.092 7.769 27.897 hybrid contribution -0.239 0.796 -0.430 0.935 sum 5.850 -25.296 7.339 26.981 Atomic orbital electron populations 1.21780 0.96020 1.01316 1.01968 1.21580 0.95748 0.97151 1.01735 1.21607 0.94359 0.96485 1.02673 1.21259 0.95651 0.94305 0.98668 0.90680 1.21546 0.95041 1.00318 0.97936 1.21524 0.96010 0.96775 1.01235 1.21412 0.99387 0.96148 0.98221 1.22012 0.96166 1.01256 0.98460 1.22035 0.92884 0.91830 0.89654 0.92609 1.87917 1.86307 1.19553 1.35514 1.22639 0.99033 0.81379 0.98396 1.21566 1.01575 0.95530 0.96538 1.21585 1.01060 0.92767 0.99929 1.21608 0.99316 0.98536 0.95212 1.19104 0.96823 0.89030 0.96730 1.21267 1.43837 0.93486 0.97265 0.92784 1.25038 0.95783 0.97722 0.96004 1.69960 1.49313 1.08481 1.25930 0.86665 0.79404 0.78541 0.83430 1.21310 1.20251 1.20255 0.93042 0.92863 0.92602 0.91855 0.92472 0.92412 0.90885 0.90908 0.92220 0.92243 0.92576 0.90998 0.92592 0.91842 0.91562 0.93751 0.93724 0.91595 0.91602 0.92526 0.92513 0.93460 0.93458 0.96736 0.96732 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.79 16 2 C -0.12 -0.95 5.69 -26.73 -0.15 -1.10 16 3 C -0.11 -1.01 4.47 -26.73 -0.12 -1.13 16 4 C -0.08 -0.70 2.02 -90.62 -0.18 -0.88 16 5 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 6 C -0.11 -0.97 4.81 -26.74 -0.13 -1.09 16 7 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 8 C -0.11 -1.05 5.78 -26.73 -0.15 -1.20 16 9 C -0.14 -1.29 5.62 -26.76 -0.15 -1.44 16 10 C 0.09 0.93 2.35 -26.76 -0.06 0.87 16 11 H 0.06 0.54 7.79 -51.93 -0.40 0.13 16 12 O -0.37 -4.56 8.06 -35.23 -0.28 -4.84 16 13 C 0.06 0.78 5.75 37.16 0.21 1.00 16 14 C -0.11 -1.67 5.58 -26.73 -0.15 -1.82 16 15 C -0.12 -1.99 5.21 -26.73 -0.14 -2.13 16 16 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 17 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 18 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 19 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16 22 Si 0.89 22.07 29.54 -169.99 -5.02 17.04 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.48 6.57 -51.93 -0.34 0.13 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.77 7.84 -51.93 -0.41 0.36 16 33 H 0.07 0.77 7.68 -51.92 -0.40 0.37 16 34 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 35 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.78 7.68 -51.92 -0.40 0.39 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 40 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.04 0.54 7.87 -51.93 -0.41 0.14 16 42 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 50 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -30.05 390.56 -10.87 -40.92 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -10.68 Total: -5.37 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -1.50 Total: -26.83 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.74 Total: -26.80 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.28 Total: -4.84 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.05 -10.87 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224375769.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.118 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds