Wall clock time and date at job start Tue Mar 31 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 C 1.52996 * 109.46975 * 119.99538 * 2 1 3 5 5 H 1.09001 * 109.47372 * 300.00372 * 4 2 1 6 6 C 1.53002 * 109.46891 * 60.00408 * 4 2 1 7 7 C 1.53006 * 109.47212 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.46542 * 299.99792 * 7 6 4 9 9 H 1.09001 * 109.46812 * 299.99757 * 8 7 6 10 10 O 1.42905 * 109.46812 * 180.02562 * 8 7 6 11 11 C 1.42893 * 113.99968 * 89.99736 * 10 8 7 12 12 C 1.52999 * 109.47098 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47685 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47685 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47214 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47038 * 180.02562 * 15 14 13 17 17 H 1.08008 * 120.00257 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00148 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99992 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00345 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46856 * 60.00011 * 20 18 16 22 22 H 1.48498 * 109.47328 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47177 * 300.00242 * 20 18 16 24 24 C 1.52997 * 109.47452 * 59.99974 * 8 7 6 25 25 C 1.52996 * 109.47131 * 300.00126 * 24 8 7 26 26 H 1.08998 * 109.47624 * 300.00543 * 1 2 3 27 27 H 1.09002 * 109.47497 * 60.00450 * 1 2 3 28 28 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46922 * 239.99626 * 2 1 3 30 30 H 1.08996 * 109.46698 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47097 * 299.99801 * 3 2 1 32 32 H 1.09001 * 109.47142 * 59.99766 * 3 2 1 33 33 H 1.09001 * 109.47248 * 299.99310 * 6 4 2 34 34 H 1.08988 * 109.47757 * 59.99833 * 6 4 2 35 35 H 1.08992 * 109.47342 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.47369 * 59.99208 * 7 6 4 37 37 H 1.09000 * 109.47553 * 300.00040 * 11 10 8 38 38 H 1.09006 * 109.47341 * 60.00274 * 11 10 8 39 39 H 1.09000 * 109.47100 * 300.00499 * 12 11 10 40 40 H 1.08996 * 109.47380 * 59.99854 * 12 11 10 41 41 H 1.09000 * 109.47234 * 300.00387 * 13 12 11 42 42 H 1.09009 * 109.46797 * 59.99818 * 13 12 11 43 43 H 1.09000 * 109.47100 * 300.00468 * 14 13 12 44 44 H 1.08998 * 109.46777 * 60.00276 * 14 13 12 45 45 H 1.09000 * 109.46863 * 299.99836 * 15 14 13 46 46 H 1.09001 * 109.46912 * 59.99882 * 15 14 13 47 47 H 0.96999 * 120.00046 * 179.97438 * 19 18 16 48 48 H 1.09001 * 109.46832 * 59.99801 * 24 8 7 49 49 H 1.08992 * 109.47303 * 179.97438 * 24 8 7 50 50 H 1.09004 * 109.47552 * 179.97438 * 25 24 8 51 51 H 1.09001 * 109.46997 * 299.99574 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6765 -0.2073 2.1392 6 6 1.5299 -2.1637 1.2493 7 6 2.0394 -2.8847 2.4989 8 6 3.5694 -2.8847 2.4995 9 1 3.9331 -3.3987 1.6098 10 8 4.0453 -3.5587 3.6664 11 6 4.2390 -4.9631 3.4879 12 6 4.7475 -5.5777 4.7935 13 6 4.9556 -7.0814 4.6024 14 6 5.4647 -7.6959 5.9078 15 6 5.6734 -9.1995 5.7164 16 6 6.1742 -9.8048 7.0024 17 1 6.3278 -9.1797 7.8697 18 6 6.4352 -11.1568 7.0722 19 7 6.2467 -11.9183 6.0166 20 14 7.0567 -11.9071 8.6660 21 1 6.0597 -11.6781 9.7426 22 1 7.2592 -13.3664 8.4803 23 1 8.3457 -11.2729 9.0421 24 6 4.0794 -1.4422 2.4995 25 6 3.5699 -0.7212 1.2500 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.4399 -2.1637 1.2493 34 1 1.8932 -2.6775 0.3594 35 1 1.6765 -3.9125 2.4987 36 1 1.6757 -2.3707 3.3887 37 1 3.2929 -5.4282 3.2113 38 1 4.9713 -5.1315 2.6982 39 1 5.6937 -5.1125 5.0698 40 1 4.0157 -5.4094 5.5836 41 1 4.0096 -7.5469 4.3259 42 1 5.6877 -7.2493 3.8124 43 1 6.4108 -7.2303 6.1839 44 1 4.7329 -7.5280 6.6980 45 1 4.7274 -9.6653 5.4402 46 1 6.4053 -9.3670 4.9263 47 1 6.4307 -12.8694 6.0656 48 1 3.7157 -0.9283 3.3892 49 1 5.1694 -1.4422 2.5004 50 1 3.9329 0.3067 1.2501 51 1 3.9337 -1.2351 0.3602 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224376167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:27 Heat of formation + Delta-G solvation = -117.628075 kcal Electronic energy + Delta-G solvation = -21923.679006 eV Core-core repulsion = 18820.284498 eV Total energy + Delta-G solvation = -3103.394508 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.82881 -37.77251 -35.45378 -34.31098 -32.74379 -31.26092 -30.40702 -28.73167 -27.53244 -26.29049 -23.55685 -22.92856 -22.64105 -21.05723 -20.30512 -20.04765 -19.97555 -16.84236 -16.16102 -16.08220 -15.74211 -14.79165 -14.70035 -14.57713 -14.41916 -14.30673 -13.89593 -13.48935 -13.27846 -12.76548 -12.67523 -12.60461 -12.34917 -12.28512 -11.98901 -11.77804 -11.54060 -11.51028 -11.38107 -11.33951 -11.07726 -10.92537 -10.87195 -10.67435 -10.52305 -10.46276 -10.36825 -10.32755 -10.25930 -9.59639 -9.39423 -9.21666 -8.98059 -8.30016 -5.95414 -3.97497 3.36259 3.40125 3.43035 3.58401 4.29957 4.33002 4.43066 4.49761 4.63259 4.77515 4.93415 4.99739 5.03408 5.12094 5.17046 5.22172 5.22940 5.24106 5.29543 5.33770 5.39988 5.46315 5.49169 5.54275 5.57663 5.59343 5.68445 5.72040 5.76718 5.77704 5.86660 5.90819 5.93252 5.95746 5.99834 6.11922 6.14238 6.20453 6.33753 6.46382 6.56476 6.86257 6.99805 7.22002 7.29873 7.73339 7.89452 8.05637 8.48962 9.09788 9.66176 11.15918 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.056408 B = 0.001907 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.261252 B =14682.941709 C =14891.958288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.084 4.084 5 H 0.071 0.929 6 C -0.113 4.113 7 C -0.141 4.141 8 C 0.090 3.910 9 H 0.057 0.943 10 O -0.385 6.385 11 C 0.063 3.937 12 C -0.116 4.116 13 C -0.116 4.116 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.116 4.116 25 C -0.113 4.113 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.015 0.985 46 H 0.015 0.985 47 H 0.260 0.740 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.070 0.930 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.156 26.256 -14.047 31.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.102 4.102 5 H 0.090 0.910 6 C -0.151 4.151 7 C -0.179 4.179 8 C 0.032 3.968 9 H 0.075 0.925 10 O -0.304 6.304 11 C -0.014 4.014 12 C -0.154 4.154 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.153 4.153 25 C -0.150 4.150 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.070 0.930 48 H 0.088 0.912 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.105 26.162 -13.934 31.316 hybrid contribution 0.262 -0.737 0.594 0.982 sum -9.843 25.425 -13.340 30.352 Atomic orbital electron populations 1.21904 0.95346 1.01903 1.01580 1.21145 0.95696 0.96124 0.98142 1.21905 1.01235 0.95983 1.01591 1.21252 0.95245 0.95718 0.98025 0.91039 1.21610 1.00639 0.95061 0.97774 1.22042 0.96115 1.01008 0.98757 1.22062 0.93099 0.93260 0.88351 0.92518 1.87910 1.86434 1.20755 1.35307 1.22655 0.99152 0.80693 0.98859 1.21590 1.01659 0.96176 0.95952 1.21587 1.01095 0.92628 1.00019 1.21613 0.99345 0.99165 0.94594 1.19109 0.96858 0.88898 0.96876 1.21266 1.43857 0.93083 0.97656 0.92774 1.25037 0.95791 0.97387 0.96345 1.69961 1.49278 1.05491 1.28915 0.86659 0.79393 0.77989 0.83954 1.20267 1.21316 1.20271 1.21578 1.00959 0.94125 0.98680 1.21620 0.95166 1.00559 0.97681 0.92745 0.92937 0.92332 0.91307 0.92345 0.92938 0.92740 0.91410 0.92006 0.91778 0.91189 0.93603 0.93598 0.91525 0.91526 0.92476 0.92475 0.93425 0.93428 0.96706 0.96700 0.93026 0.91198 0.91362 0.91188 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.84 37.16 0.33 -0.52 16 2 C -0.09 -0.55 2.51 -90.62 -0.23 -0.77 16 3 C -0.15 -0.81 8.84 37.16 0.33 -0.49 16 4 C -0.08 -0.56 1.77 -90.62 -0.16 -0.72 16 5 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 6 C -0.11 -0.84 4.85 -26.73 -0.13 -0.97 16 7 C -0.14 -1.31 5.54 -26.73 -0.15 -1.46 16 8 C 0.09 0.94 2.61 -26.73 -0.07 0.87 16 9 H 0.06 0.57 7.79 -51.93 -0.40 0.17 16 10 O -0.38 -5.14 9.99 -35.23 -0.35 -5.50 16 11 C 0.06 0.83 5.75 37.16 0.21 1.04 16 12 C -0.12 -1.74 5.58 -26.73 -0.15 -1.89 16 13 C -0.12 -2.01 5.21 -26.73 -0.14 -2.15 16 14 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 15 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 17 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 20 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.12 -1.03 5.57 -26.73 -0.15 -1.18 16 25 C -0.11 -0.79 4.85 -26.73 -0.13 -0.92 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.31 6.43 -51.93 -0.33 -0.03 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.47 6.43 -51.93 -0.33 0.13 16 34 H 0.06 0.45 8.14 -51.94 -0.42 0.03 16 35 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.58 7.87 -51.93 -0.41 0.17 16 38 H 0.05 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.07 0.44 6.43 -51.93 -0.33 0.10 16 51 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -30.47 388.83 -10.45 -40.92 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -10.55 Total: -6.36 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -1.12 Total: -25.23 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.74 Total: -26.77 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.35 Total: -5.50 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.47 -10.45 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224376167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.708 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds