Wall clock time and date at job start Tue Mar 31 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47257 * 2 1 4 4 C 1.53003 * 109.47365 * 185.01496 * 3 2 1 5 5 H 1.08997 * 109.47365 * 55.90262 * 4 3 2 6 6 O 1.42901 * 109.46788 * 295.90038 * 4 3 2 7 7 C 1.42903 * 113.99736 * 139.33226 * 6 4 3 8 8 C 1.52998 * 109.47073 * 176.06795 * 7 6 4 9 9 C 1.53002 * 109.47145 * 179.97438 * 8 7 6 10 10 C 1.53008 * 109.46923 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46795 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00327 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99882 * 180.02562 * 11 10 9 14 14 N 1.31508 * 119.99812 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99927 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46993 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.47242 * 120.00097 * 15 13 11 18 18 H 1.48502 * 109.46784 * 240.00235 * 15 13 11 19 19 C 1.52999 * 109.47099 * 175.90300 * 4 3 2 20 20 C 1.52997 * 109.47335 * 298.67222 * 19 4 3 21 21 C 1.52991 * 109.47432 * 180.02562 * 20 19 4 22 22 C 1.52997 * 109.47096 * 60.00197 * 21 20 19 23 23 C 1.52995 * 109.47172 * 299.99762 * 22 21 20 24 24 C 1.52999 * 109.46819 * 60.00343 * 23 22 21 25 25 H 1.09001 * 109.47312 * 60.00172 * 1 2 3 26 26 H 1.09004 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47028 * 299.99818 * 1 2 3 28 28 H 1.09003 * 109.47420 * 240.00414 * 2 1 3 29 29 H 1.09002 * 109.47318 * 120.00384 * 2 1 3 30 30 H 1.08998 * 109.47208 * 65.01444 * 3 2 1 31 31 H 1.09003 * 109.47380 * 305.01104 * 3 2 1 32 32 H 1.08991 * 109.47535 * 56.06465 * 7 6 4 33 33 H 1.08999 * 109.46874 * 296.06346 * 7 6 4 34 34 H 1.08999 * 109.46904 * 299.99532 * 8 7 6 35 35 H 1.09003 * 109.47595 * 59.99385 * 8 7 6 36 36 H 1.08999 * 109.47021 * 299.99685 * 9 8 7 37 37 H 1.08993 * 109.46915 * 60.00100 * 9 8 7 38 38 H 1.08999 * 109.47249 * 299.99832 * 10 9 8 39 39 H 1.09002 * 109.46889 * 60.00310 * 10 9 8 40 40 H 0.96999 * 119.99813 * 179.97438 * 14 13 11 41 41 H 1.08996 * 109.47282 * 58.67475 * 19 4 3 42 42 H 1.09004 * 109.46976 * 300.00592 * 20 19 4 43 43 H 1.09004 * 109.46819 * 59.99997 * 20 19 4 44 44 H 1.09004 * 109.47347 * 300.00148 * 21 20 19 45 45 H 1.09008 * 109.47296 * 180.02562 * 21 20 19 46 46 H 1.09005 * 109.47154 * 180.02562 * 22 21 20 47 47 H 1.09001 * 109.47602 * 60.00278 * 22 21 20 48 48 H 1.08996 * 109.47306 * 300.00221 * 23 22 21 49 49 H 1.09004 * 109.47173 * 179.97438 * 23 22 21 50 50 H 1.09009 * 109.47482 * 180.02562 * 24 23 22 51 51 H 1.09004 * 109.47572 * 59.99889 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 -0.1261 5 1 3.8561 0.8937 -1.0205 6 8 4.1386 0.8213 1.0248 7 6 5.2466 -0.0323 0.7319 8 6 5.8396 -0.5645 2.0381 9 6 7.0255 -1.4790 1.7245 10 6 7.6189 -2.0107 3.0307 11 6 8.7866 -2.9119 2.7218 12 1 9.0767 -3.0875 1.6964 13 6 9.4845 -3.5122 3.7482 14 7 9.1309 -3.2987 4.9968 15 14 10.9323 -4.6287 3.3653 16 1 11.1237 -4.7043 1.8947 17 1 12.1598 -4.0820 3.9973 18 1 10.6639 -5.9881 3.8996 19 6 4.0663 2.8861 -0.2289 20 6 3.4779 3.5429 -1.4792 21 6 3.9799 4.9844 -1.5823 22 6 5.5070 4.9873 -1.6755 23 6 6.0954 4.3307 -0.4251 24 6 5.5935 2.8890 -0.3220 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.7519 1.9297 0.9315 31 1 1.6052 1.9816 -0.8417 32 1 6.0066 0.5314 0.1910 33 1 4.9092 -0.8681 0.1190 34 1 6.1770 0.2713 2.6510 35 1 5.0796 -1.1282 2.5791 36 1 6.6877 -2.3148 1.1117 37 1 7.7856 -0.9156 1.1834 38 1 7.9568 -1.1746 3.6431 39 1 6.8589 -2.5740 3.5722 40 1 9.6217 -3.7214 5.7188 41 1 3.7548 3.4430 0.6548 42 1 3.7894 2.9859 -2.3629 43 1 2.3899 3.5404 -1.4131 44 1 3.6687 5.5417 -0.6987 45 1 3.5603 5.4525 -2.4729 46 1 5.8647 6.0144 -1.7485 47 1 5.8182 4.4302 -2.5591 48 1 5.7843 4.8878 0.4585 49 1 7.1834 4.3323 -0.4917 50 1 6.0123 2.4212 0.5690 51 1 5.9046 2.3318 -1.2057 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224689271.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:22 Heat of formation + Delta-G solvation = -117.918749 kcal Electronic energy + Delta-G solvation = -22877.464792 eV Core-core repulsion = 19774.057679 eV Total energy + Delta-G solvation = -3103.407112 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.70373 -37.35809 -35.28398 -34.20185 -32.40004 -31.69478 -30.86426 -28.87562 -27.79358 -24.78450 -23.86402 -22.83163 -21.72331 -21.36370 -20.74580 -19.97811 -19.72485 -16.62621 -16.25901 -16.19605 -15.20726 -14.86263 -14.67133 -14.44636 -14.39142 -14.17045 -14.05261 -13.51893 -13.14491 -12.79045 -12.58790 -12.42320 -12.26615 -12.13611 -11.83883 -11.67144 -11.43552 -11.35265 -11.20992 -11.11504 -11.00123 -10.88301 -10.79354 -10.59174 -10.54508 -10.46043 -10.42618 -10.28221 -10.03252 -9.63593 -9.27334 -9.11708 -8.99970 -8.31790 -5.96576 -3.98804 3.32769 3.39995 3.44201 3.81105 4.39991 4.48851 4.56471 4.59899 4.78374 4.94160 4.96785 5.06532 5.12765 5.21287 5.27406 5.35086 5.36788 5.38946 5.39090 5.45414 5.47046 5.55230 5.57014 5.65793 5.70349 5.74511 5.82671 5.87419 5.89231 5.95784 5.97825 6.02625 6.05221 6.11368 6.14462 6.18268 6.21222 6.26880 6.33734 6.36173 6.53349 6.82846 6.96787 7.15051 7.50754 7.72609 7.87780 8.04475 8.46852 9.08825 9.65011 11.14850 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.003139 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.561305 B = 8917.186358 C =10295.752328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.120 4.120 4 C 0.093 3.907 5 H 0.057 0.943 6 O -0.378 6.378 7 C 0.059 3.941 8 C -0.116 4.116 9 C -0.107 4.107 10 C 0.021 3.979 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.103 4.103 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.118 4.118 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.061 0.939 50 H 0.073 0.927 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.805 15.433 -14.315 25.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.158 4.158 4 C 0.035 3.965 5 H 0.075 0.925 6 O -0.297 6.297 7 C -0.017 4.017 8 C -0.153 4.153 9 C -0.145 4.145 10 C -0.016 4.016 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.121 4.121 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.156 4.156 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.092 0.908 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.826 15.412 -13.953 25.534 hybrid contribution 0.970 -0.693 -0.352 1.243 sum -13.855 14.718 -14.305 24.763 Atomic orbital electron populations 1.21768 0.96126 1.01492 1.01438 1.21490 0.95406 0.96791 1.02524 1.21837 0.93951 0.97445 1.02540 1.22115 0.92945 0.92365 0.89064 0.92489 1.87925 1.47867 1.62662 1.31239 1.22820 0.87835 0.92164 0.98870 1.21624 0.98468 0.99775 0.95460 1.21571 0.94823 0.97019 1.01087 1.19092 0.95366 0.95836 0.91289 1.21316 1.13956 1.27787 0.92725 0.92698 1.25037 0.97588 0.96829 0.95111 1.69979 1.40722 1.44208 0.98587 0.86554 0.82595 0.80553 0.78413 1.19760 1.21026 1.21034 1.21616 0.95789 0.96188 0.98545 1.21626 1.00055 0.95827 0.97695 1.21514 0.95815 0.96697 1.01521 1.21545 0.95487 1.00319 0.98385 1.21524 1.00040 0.96163 0.97925 1.21664 0.94983 0.96655 1.02273 0.93126 0.92866 0.92798 0.92511 0.91077 0.91261 0.90925 0.93305 0.93991 0.91838 0.91832 0.93425 0.93434 0.96567 0.96572 0.93094 0.90577 0.92109 0.91703 0.92054 0.92274 0.92341 0.92165 0.92035 0.92024 0.90818 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.12 -1.26 5.77 -26.74 -0.15 -1.42 16 3 C -0.12 -1.18 4.71 -26.73 -0.13 -1.31 16 4 C 0.09 1.04 1.87 -26.73 -0.05 0.99 16 5 H 0.06 0.63 7.70 -51.93 -0.40 0.23 16 6 O -0.38 -5.42 9.17 -35.23 -0.32 -5.75 16 7 C 0.06 0.89 5.15 37.16 0.19 1.08 16 8 C -0.12 -2.08 5.58 -26.73 -0.15 -2.23 16 9 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 10 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 11 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 15 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 19 C -0.10 -1.04 1.98 -90.62 -0.18 -1.22 16 20 C -0.11 -0.95 4.89 -26.74 -0.13 -1.08 16 21 C -0.12 -0.92 5.92 -26.74 -0.16 -1.07 16 22 C -0.12 -0.99 5.92 -26.74 -0.16 -1.15 16 23 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 24 C -0.12 -1.28 3.96 -26.73 -0.11 -1.39 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.59 6.26 -51.93 -0.32 0.27 16 32 H 0.05 0.69 5.94 -51.93 -0.31 0.38 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.49 6.37 -51.93 -0.33 0.15 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.07 0.94 6.39 -51.92 -0.33 0.61 16 51 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -30.09 387.16 -10.80 -40.89 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -10.52 Total: -4.41 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -1.50 Total: -26.80 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.74 Total: -26.69 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.32 Total: -5.75 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.09 -10.80 -40.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689271.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.031 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds