Wall clock time and date at job start Tue Mar 31 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47566 * 2 1 4 4 C 1.53001 * 109.46922 * 176.19516 * 3 2 1 5 5 H 1.08994 * 109.46836 * 304.00616 * 4 3 2 6 6 O 1.42897 * 109.47317 * 64.01203 * 4 3 2 7 7 C 1.42893 * 113.99833 * 260.20354 * 6 4 3 8 8 C 1.53006 * 109.47243 * 180.60394 * 7 6 4 9 9 C 1.53002 * 109.47337 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46832 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46559 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00588 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99471 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00518 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99784 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47422 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47311 * 119.99767 * 15 13 11 18 18 H 1.48504 * 109.47146 * 240.00120 * 15 13 11 19 19 C 1.53000 * 109.46717 * 184.01052 * 4 3 2 20 20 C 1.53000 * 109.47045 * 179.97438 * 19 4 3 21 21 C 1.53000 * 109.47045 * 179.97438 * 20 19 4 22 22 C 1.53004 * 109.47415 * 60.00167 * 21 20 19 23 23 C 1.53000 * 109.46877 * 299.99936 * 22 21 20 24 24 C 1.53005 * 109.47367 * 59.99890 * 23 22 21 25 25 H 1.09000 * 109.46587 * 300.00004 * 1 2 3 26 26 H 1.08996 * 109.47010 * 59.99853 * 1 2 3 27 27 H 1.08997 * 109.47547 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47240 * 239.99627 * 2 1 3 29 29 H 1.09006 * 109.46909 * 120.00142 * 2 1 3 30 30 H 1.09001 * 109.46936 * 56.19440 * 3 2 1 31 31 H 1.08997 * 109.47054 * 296.19601 * 3 2 1 32 32 H 1.09004 * 109.47213 * 300.59879 * 7 6 4 33 33 H 1.08997 * 109.47657 * 60.59838 * 7 6 4 34 34 H 1.09004 * 109.46595 * 299.99863 * 8 7 6 35 35 H 1.08997 * 109.47248 * 59.99194 * 8 7 6 36 36 H 1.08999 * 109.46690 * 299.99532 * 9 8 7 37 37 H 1.09003 * 109.46911 * 60.00059 * 9 8 7 38 38 H 1.08997 * 109.46991 * 299.99799 * 10 9 8 39 39 H 1.08994 * 109.47005 * 60.00245 * 10 9 8 40 40 H 0.96999 * 120.00587 * 179.97438 * 14 13 11 41 41 H 1.08996 * 109.47243 * 300.00164 * 19 4 3 42 42 H 1.09003 * 109.46715 * 60.00375 * 20 19 4 43 43 H 1.08995 * 109.47343 * 299.99708 * 20 19 4 44 44 H 1.09002 * 109.47417 * 180.02562 * 21 20 19 45 45 H 1.09006 * 109.47257 * 300.00269 * 21 20 19 46 46 H 1.08996 * 109.46766 * 59.99890 * 22 21 20 47 47 H 1.08989 * 109.47246 * 180.02562 * 22 21 20 48 48 H 1.08995 * 109.47343 * 300.00130 * 23 22 21 49 49 H 1.09002 * 109.47386 * 179.97438 * 23 22 21 50 50 H 1.08992 * 109.47645 * 179.97438 * 24 23 22 51 51 H 1.09006 * 109.47138 * 59.99607 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5672 1.4434 0.0957 5 1 3.8760 0.8878 0.9812 6 8 4.1179 0.8267 -1.0698 7 6 4.5105 -0.5337 -0.8770 8 6 5.0966 -1.0847 -2.1785 9 6 5.5177 -2.5411 -1.9719 10 6 6.1031 -3.0922 -3.2735 11 6 6.5172 -4.5269 -3.0702 12 1 6.3772 -4.9983 -2.1087 13 6 7.0758 -5.2373 -4.1115 14 7 7.2468 -4.6632 -5.2822 15 14 7.5898 -7.0154 -3.8593 16 1 7.2929 -7.4232 -2.4625 17 1 6.8383 -7.8859 -4.7988 18 1 9.0461 -7.1509 -4.1161 19 6 4.0709 2.8845 0.1965 20 6 5.5979 2.8855 0.2928 21 6 6.1017 4.3267 0.3929 22 6 5.5116 4.9878 1.6402 23 6 3.9846 4.9869 1.5438 24 6 3.4807 3.5457 1.4437 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6222 1.9756 0.8539 31 1 1.7336 1.9362 -0.9221 32 1 5.2619 -0.5868 -0.0890 33 1 3.6413 -1.1257 -0.5906 34 1 4.3453 -1.0316 -2.9664 35 1 5.9658 -0.4927 -2.4648 36 1 6.2691 -2.5937 -1.1841 37 1 4.6486 -3.1334 -1.6853 38 1 5.3514 -3.0395 -4.0610 39 1 6.9720 -2.5000 -3.5604 40 1 7.6401 -5.1629 -6.0147 41 1 3.7620 3.4401 -0.6889 42 1 6.0183 2.4149 -0.5960 43 1 5.9064 2.3301 1.1785 44 1 7.1895 4.3274 0.4611 45 1 5.7931 4.8818 -0.4930 46 1 5.8201 4.4327 2.5260 47 1 5.8701 6.0146 1.7112 48 1 3.6761 5.5419 0.6580 49 1 3.5641 5.4575 2.4326 50 1 2.3929 3.5449 1.3755 51 1 3.7893 2.9905 2.3297 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224689272.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:24 Heat of formation + Delta-G solvation = -117.698996 kcal Electronic energy + Delta-G solvation = -22799.354601 eV Core-core repulsion = 19695.957018 eV Total energy + Delta-G solvation = -3103.397583 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.64459 -37.57098 -35.08544 -34.16922 -32.50030 -31.73812 -30.89162 -28.73772 -27.83205 -24.92108 -23.80100 -22.80586 -21.83274 -21.24905 -20.76480 -19.95598 -19.77057 -16.67489 -16.21819 -15.99603 -15.60470 -14.81286 -14.56569 -14.48926 -14.36636 -14.21150 -14.06756 -13.41850 -13.08884 -12.68960 -12.60177 -12.47551 -12.32933 -12.18993 -11.87746 -11.67699 -11.57998 -11.34795 -11.25198 -11.06170 -10.99236 -10.92827 -10.76754 -10.55026 -10.54349 -10.46990 -10.34023 -10.19685 -10.12114 -9.63645 -9.27440 -9.14893 -8.99987 -8.31840 -5.96606 -3.98873 3.32716 3.39944 3.44127 3.77576 4.39550 4.48718 4.56545 4.62217 4.77039 4.93234 4.95379 5.05594 5.11429 5.23784 5.25551 5.34282 5.35071 5.37613 5.38840 5.43326 5.45560 5.54680 5.58831 5.64525 5.70179 5.73618 5.83919 5.86432 5.88918 5.94497 5.98280 6.00363 6.04542 6.10495 6.13854 6.17760 6.22292 6.26027 6.33879 6.35552 6.53244 6.82879 6.96760 7.15072 7.51003 7.72587 7.87778 8.04428 8.46790 9.08781 9.64952 11.14814 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.018704 B = 0.002930 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.634031 B = 9554.835951 C =10680.913111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.138 4.138 4 C 0.093 3.907 5 H 0.057 0.943 6 O -0.378 6.378 7 C 0.060 3.940 8 C -0.116 4.116 9 C -0.107 4.107 10 C 0.021 3.979 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.085 4.085 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.115 4.115 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.059 0.941 50 H 0.065 0.935 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.681 19.117 15.041 26.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.176 4.176 4 C 0.035 3.965 5 H 0.075 0.925 6 O -0.297 6.297 7 C -0.017 4.017 8 C -0.153 4.153 9 C -0.145 4.145 10 C -0.016 4.016 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.104 4.104 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.152 4.152 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.080 0.920 49 H 0.078 0.922 50 H 0.084 0.916 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.595 19.173 14.693 25.991 hybrid contribution 0.289 -1.181 0.263 1.244 sum -9.305 17.991 14.956 25.178 Atomic orbital electron populations 1.21757 0.95969 1.01584 1.01441 1.21638 0.95813 0.96930 1.02385 1.22159 0.95570 0.97315 1.02513 1.22105 0.92323 0.93345 0.88715 0.92497 1.87913 1.81482 1.26081 1.34247 1.22827 0.97829 0.81908 0.99091 1.21626 1.00671 0.97544 0.95490 1.21570 0.99588 0.92151 1.01183 1.19089 0.95881 0.95346 0.91270 1.21316 1.40157 0.97226 0.97085 0.92698 1.25036 0.95982 0.98263 0.95279 1.69977 1.44847 1.36701 1.01984 0.86556 0.78225 0.85168 0.78169 1.19766 1.21029 1.21023 1.21271 0.95809 0.94756 0.98548 1.21519 0.94783 0.96337 1.02414 1.21535 0.99934 0.96286 0.97934 1.21549 0.95504 1.00295 0.98420 1.21515 0.95802 0.96632 1.01587 1.21635 1.00140 0.95806 0.97633 0.93114 0.92781 0.92774 0.90999 0.92420 0.91182 0.91263 0.93987 0.93330 0.91820 0.91843 0.93432 0.93427 0.96566 0.96568 0.93087 0.90569 0.90865 0.92457 0.92122 0.92052 0.92153 0.92349 0.92005 0.92205 0.91616 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.13 -1.38 4.80 -26.73 -0.13 -1.51 16 3 C -0.14 -1.39 4.69 -26.73 -0.13 -1.52 16 4 C 0.09 1.05 1.87 -26.73 -0.05 1.00 16 5 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 6 O -0.38 -5.44 9.08 -35.23 -0.32 -5.76 16 7 C 0.06 0.89 5.32 37.16 0.20 1.09 16 8 C -0.12 -2.08 5.58 -26.73 -0.15 -2.23 16 9 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 10 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 11 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 15 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 C -0.09 -0.85 1.99 -90.62 -0.18 -1.03 16 20 C -0.11 -1.18 5.06 -26.73 -0.14 -1.31 16 21 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 22 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 23 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 24 C -0.11 -0.92 4.86 -26.72 -0.13 -1.05 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.90 6.44 -51.93 -0.33 0.56 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.60 6.22 -51.93 -0.32 0.27 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.61 8.10 -51.93 -0.42 0.18 16 33 H 0.05 0.69 5.82 -51.93 -0.30 0.39 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.41 8.14 -51.94 -0.42 -0.02 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 0.49 6.34 -51.93 -0.33 0.16 16 51 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -30.11 386.95 -10.77 -40.88 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -10.50 Total: -4.47 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -1.49 Total: -26.71 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.74 Total: -26.71 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.32 Total: -5.76 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.11 -10.77 -40.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689272.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.817 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds