Wall clock time and date at job start Tue Mar 31 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 6 6 H 1.09002 * 109.47103 * 300.00247 * 5 2 1 7 7 C 1.53002 * 109.47106 * 60.00162 * 5 2 1 8 8 C 1.53000 * 109.47233 * 180.02562 * 7 5 2 9 9 C 1.53001 * 109.46886 * 299.99330 * 8 7 5 10 10 H 1.09004 * 109.47086 * 180.02562 * 9 8 7 11 11 O 1.42895 * 109.47624 * 300.00350 * 9 8 7 12 12 C 1.42895 * 114.00454 * 209.99995 * 11 9 8 13 13 C 1.52999 * 109.47459 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.46998 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46995 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47189 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00134 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99797 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00539 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99641 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47493 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47023 * 119.99605 * 20 18 16 23 23 H 1.48500 * 109.47195 * 239.99378 * 20 18 16 24 24 C 1.53002 * 109.46963 * 60.00501 * 9 8 7 25 25 C 1.52997 * 109.47482 * 179.97438 * 5 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 35 35 H 1.09000 * 109.46986 * 300.00235 * 7 5 2 36 36 H 1.09002 * 109.47596 * 60.00070 * 7 5 2 37 37 H 1.08992 * 109.47399 * 59.99834 * 8 7 5 38 38 H 1.09001 * 109.47194 * 180.02562 * 8 7 5 39 39 H 1.09000 * 109.47222 * 300.00086 * 12 11 9 40 40 H 1.09003 * 109.47046 * 59.99693 * 12 11 9 41 41 H 1.08995 * 109.47231 * 299.99885 * 13 12 11 42 42 H 1.09003 * 109.47037 * 59.99939 * 13 12 11 43 43 H 1.09003 * 109.46972 * 299.99772 * 14 13 12 44 44 H 1.08994 * 109.47339 * 59.99869 * 14 13 12 45 45 H 1.09008 * 109.46698 * 299.99990 * 15 14 13 46 46 H 1.09003 * 109.47363 * 59.99850 * 15 14 13 47 47 H 0.96996 * 120.00241 * 180.02562 * 19 18 16 48 48 H 1.09002 * 109.47067 * 59.99659 * 24 9 8 49 49 H 1.09000 * 109.47312 * 179.97438 * 24 9 8 50 50 H 1.09002 * 109.47153 * 300.00216 * 25 5 2 51 51 H 1.09001 * 109.47289 * 60.00300 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0400 -0.7213 -1.2491 6 1 1.6767 -1.7489 -1.2491 7 6 1.5301 -0.0001 -2.4984 8 6 2.0397 -0.7217 -3.7476 9 6 3.5697 -0.7221 -3.7479 10 1 3.9327 -1.2358 -4.6381 11 8 4.0464 0.6250 -3.7482 12 6 5.3060 0.7957 -4.4011 13 6 5.7159 2.2685 -4.3416 14 6 7.0648 2.4511 -5.0401 15 6 7.4751 3.9238 -4.9800 16 6 8.8034 4.1038 -5.6686 17 1 9.3051 3.2528 -6.1051 18 6 9.3787 5.3548 -5.7405 19 7 8.7681 6.3910 -5.2086 20 14 11.0256 5.5777 -6.5934 21 1 11.5003 4.2664 -7.1037 22 1 10.8717 6.5243 -7.7273 23 1 12.0143 6.1196 -5.6270 24 6 4.0797 -1.4433 -2.4986 25 6 3.5700 -0.7207 -1.2494 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 -1.7488 1.2493 33 1 3.1300 -0.7207 1.2495 34 1 1.6766 -0.2073 2.1393 35 1 0.4401 -0.0001 -2.4985 36 1 1.8934 1.0276 -2.4985 37 1 1.6760 -1.7492 -3.7474 38 1 1.6767 -0.2077 -4.6377 39 1 6.0599 0.1878 -3.9009 40 1 5.2206 0.4845 -5.4423 41 1 4.9620 2.8760 -4.8421 42 1 5.8011 2.5801 -3.3005 43 1 7.8186 1.8436 -4.5392 44 1 6.9801 2.1394 -6.0811 45 1 6.7213 4.5316 -5.4807 46 1 7.5600 4.2352 -3.9389 47 1 9.1727 7.2711 -5.2595 48 1 3.7160 -2.4709 -2.4984 49 1 5.1697 -1.4440 -2.4990 50 1 3.9330 0.3071 -1.2497 51 1 3.9338 -1.2343 -0.3594 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224689619.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:29 Heat of formation + Delta-G solvation = -108.105606 kcal Electronic energy + Delta-G solvation = -23087.057734 eV Core-core repulsion = 19984.076151 eV Total energy + Delta-G solvation = -3102.981583 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.07316 -37.82899 -35.22012 -33.99640 -32.19375 -31.05140 -29.33088 -28.23639 -27.43079 -27.39686 -24.70424 -22.92793 -22.55015 -21.65274 -20.20836 -19.68671 -18.43220 -16.38877 -16.18012 -15.85667 -15.64134 -14.99043 -14.43756 -14.38118 -14.23003 -14.18884 -13.73523 -13.38357 -12.99964 -12.69122 -12.54806 -12.48335 -12.28658 -11.95579 -11.87062 -11.75403 -11.65881 -11.40146 -11.29705 -11.16106 -10.95021 -10.93963 -10.79436 -10.62379 -10.48765 -10.39881 -10.23230 -10.06149 -9.89946 -9.63699 -9.27993 -9.21692 -9.00320 -8.31951 -5.96761 -3.99020 3.32611 3.39845 3.44066 3.84410 4.48055 4.49960 4.53225 4.61133 4.81520 4.89438 4.97765 5.20303 5.24030 5.30117 5.36194 5.38740 5.42394 5.43594 5.47574 5.52263 5.54788 5.60201 5.63442 5.69384 5.71319 5.79883 5.82414 5.84519 5.89438 5.92185 5.97582 6.09815 6.10475 6.17323 6.18304 6.25107 6.25902 6.30721 6.38012 6.52797 6.57307 6.82804 6.96473 7.14869 7.50552 7.72367 7.87544 8.04252 8.46658 9.08602 9.64815 11.14656 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.026429 B = 0.002714 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.201431 B =10313.053816 C =10763.706733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C -0.145 4.145 4 C -0.143 4.143 5 C -0.072 4.072 6 H 0.062 0.938 7 C -0.114 4.114 8 C -0.114 4.114 9 C 0.089 3.911 10 H 0.054 0.946 11 O -0.376 6.376 12 C 0.063 3.937 13 C -0.115 4.115 14 C -0.107 4.107 15 C 0.021 3.979 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.140 4.140 25 C -0.112 4.112 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.259 0.741 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.077 0.923 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.070 -17.413 9.605 26.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.064 4.064 3 C -0.203 4.203 4 C -0.200 4.200 5 C -0.090 4.090 6 H 0.081 0.919 7 C -0.151 4.151 8 C -0.152 4.152 9 C 0.030 3.970 10 H 0.072 0.928 11 O -0.295 6.295 12 C -0.013 4.013 13 C -0.152 4.152 14 C -0.145 4.145 15 C -0.016 4.016 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.178 4.178 25 C -0.150 4.150 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.095 0.905 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.150 -17.075 9.715 26.078 hybrid contribution 1.131 -0.049 -0.594 1.279 sum -16.019 -17.124 9.121 25.160 Atomic orbital electron populations 1.21925 0.94999 1.01364 1.01687 1.20530 0.95148 0.95884 0.94875 1.21979 1.01615 0.95096 1.01565 1.21927 1.01338 0.99799 0.96950 1.21133 0.95484 0.98595 0.93800 0.91938 1.21617 0.99534 1.00792 0.93165 1.21615 0.93831 1.00670 0.99058 1.22004 0.94376 0.84076 0.96502 0.92796 1.87934 1.37138 1.26057 1.78407 1.22691 0.84650 0.98675 0.95322 1.21613 0.98751 0.92982 1.01889 1.21571 0.93347 1.01124 0.98469 1.19092 0.96040 0.89258 0.97201 1.21315 1.04965 0.93614 1.35893 0.92702 1.25036 0.97648 0.96149 0.95731 1.69978 1.38703 0.99436 1.45386 0.86554 0.84095 0.78103 0.79354 1.19776 1.21020 1.21026 1.22023 1.00782 0.98998 0.96014 1.21598 0.94892 1.01903 0.96564 0.93043 0.92301 0.93013 0.93271 0.92094 0.92113 0.93044 0.92288 0.93003 0.92272 0.90415 0.91377 0.91536 0.93924 0.93933 0.91821 0.91831 0.93437 0.93428 0.96568 0.96565 0.93088 0.91732 0.91936 0.90490 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.12 37.16 0.30 -0.80 16 2 C -0.06 -0.55 0.57 -154.51 -0.09 -0.64 16 3 C -0.15 -1.40 7.77 37.16 0.29 -1.12 16 4 C -0.14 -1.14 8.12 37.16 0.30 -0.84 16 5 C -0.07 -0.65 1.55 -90.62 -0.14 -0.79 16 6 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 7 C -0.11 -1.11 4.35 -26.73 -0.12 -1.23 16 8 C -0.11 -1.12 5.66 -26.73 -0.15 -1.27 16 9 C 0.09 1.00 2.92 -26.73 -0.08 0.92 16 10 H 0.05 0.58 7.79 -51.93 -0.40 0.18 16 11 O -0.38 -5.37 8.64 -35.23 -0.30 -5.67 16 12 C 0.06 0.94 5.75 37.16 0.21 1.16 16 13 C -0.11 -2.06 5.58 -26.73 -0.15 -2.21 16 14 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 15 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 16 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 17 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 20 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.14 -1.43 5.63 -26.70 -0.15 -1.58 16 25 C -0.11 -1.14 4.35 -26.71 -0.12 -1.26 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 31 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 36 H 0.08 0.91 5.97 -51.93 -0.31 0.60 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.04 0.61 7.87 -51.93 -0.41 0.20 16 40 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.67 7.87 -51.93 -0.41 0.27 16 50 H 0.08 0.93 5.97 -51.93 -0.31 0.62 16 51 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 LS Contribution 378.17 15.07 5.70 5.70 Total: -1.00 -30.02 378.17 -9.61 -39.63 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -10.15 Total: -4.44 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: -0.57 Total: -25.46 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.74 Total: -26.69 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.30 Total: -5.67 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.02 -9.61 -39.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689619.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.479 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds