Wall clock time and date at job start Tue Mar 31 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 6 6 H 1.09002 * 109.47103 * 300.00247 * 5 2 1 7 7 C 1.53002 * 109.47106 * 60.00162 * 5 2 1 8 8 C 1.53000 * 109.47233 * 180.02562 * 7 5 2 9 9 C 1.53001 * 109.46886 * 299.99330 * 8 7 5 10 10 H 1.08992 * 109.47514 * 300.00434 * 9 8 7 11 11 O 1.42898 * 109.47145 * 180.02562 * 9 8 7 12 12 C 1.42899 * 114.00025 * 150.00317 * 11 9 8 13 13 C 1.53001 * 109.47170 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47325 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47617 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47297 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00269 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99643 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99557 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00179 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47348 * 90.00034 * 20 18 16 22 22 H 1.48504 * 109.47017 * 209.99760 * 20 18 16 23 23 H 1.48498 * 109.46912 * 329.99768 * 20 18 16 24 24 C 1.53002 * 109.46963 * 60.00501 * 9 8 7 25 25 C 1.52997 * 109.47482 * 179.97438 * 5 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 35 35 H 1.09000 * 109.46986 * 300.00235 * 7 5 2 36 36 H 1.09002 * 109.47596 * 60.00070 * 7 5 2 37 37 H 1.08992 * 109.47399 * 59.99834 * 8 7 5 38 38 H 1.09001 * 109.47194 * 180.02562 * 8 7 5 39 39 H 1.08994 * 109.47217 * 300.00164 * 12 11 9 40 40 H 1.09000 * 109.47064 * 60.00194 * 12 11 9 41 41 H 1.08994 * 109.47095 * 300.00130 * 13 12 11 42 42 H 1.09000 * 109.47058 * 60.00081 * 13 12 11 43 43 H 1.09006 * 109.46909 * 300.00498 * 14 13 12 44 44 H 1.09000 * 109.46904 * 60.00088 * 14 13 12 45 45 H 1.09003 * 109.46845 * 300.00466 * 15 14 13 46 46 H 1.09001 * 109.47269 * 59.99484 * 15 14 13 47 47 H 0.97001 * 119.99831 * 179.97438 * 19 18 16 48 48 H 1.09002 * 109.47067 * 59.99659 * 24 9 8 49 49 H 1.09000 * 109.47312 * 179.97438 * 24 9 8 50 50 H 1.09002 * 109.47153 * 300.00216 * 25 5 2 51 51 H 1.09001 * 109.47289 * 60.00300 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0400 -0.7213 -1.2491 6 1 1.6767 -1.7489 -1.2491 7 6 1.5301 -0.0001 -2.4984 8 6 2.0397 -0.7217 -3.7476 9 6 3.5697 -0.7221 -3.7479 10 1 3.9333 0.3054 -3.7481 11 8 4.0456 -1.3956 -4.9149 12 6 5.3053 -0.9161 -5.3895 13 6 5.7144 -1.7043 -6.6355 14 6 7.0628 -1.1905 -7.1441 15 6 7.4717 -1.9781 -8.3904 16 6 8.8001 -1.4725 -8.8909 17 1 9.3024 -0.6694 -8.3723 18 6 9.3742 -2.0352 -10.0111 19 7 10.5334 -1.5936 -10.4481 20 14 8.5051 -3.4239 -10.9086 21 1 7.6154 -2.8574 -11.9539 22 1 9.5132 -4.3102 -11.5438 23 1 7.6958 -4.2082 -9.9416 24 6 4.0797 -1.4433 -2.4986 25 6 3.5700 -0.7207 -1.2494 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 -1.7488 1.2493 33 1 3.1300 -0.7207 1.2495 34 1 1.6766 -0.2073 2.1393 35 1 0.4401 -0.0001 -2.4985 36 1 1.8934 1.0276 -2.4985 37 1 1.6760 -1.7492 -3.7474 38 1 1.6767 -0.2077 -4.6377 39 1 5.2205 0.1412 -5.6404 40 1 6.0594 -1.0460 -4.6132 41 1 5.7991 -2.7616 -6.3850 42 1 4.9602 -1.5740 -7.4116 43 1 6.9777 -0.1330 -7.3946 44 1 7.8172 -1.3204 -6.3681 45 1 7.5566 -3.0356 -8.1402 46 1 6.7172 -1.8479 -9.1662 47 1 10.9375 -1.9897 -11.2360 48 1 3.7160 -2.4709 -2.4984 49 1 5.1697 -1.4440 -2.4990 50 1 3.9330 0.3071 -1.2497 51 1 3.9338 -1.2343 -0.3594 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224689620.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:31 Heat of formation + Delta-G solvation = -106.616074 kcal Electronic energy + Delta-G solvation = -22552.197471 eV Core-core repulsion = 19449.280480 eV Total energy + Delta-G solvation = -3102.916992 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17104 -38.04562 -35.41640 -34.26963 -32.25447 -31.23090 -29.62849 -28.36323 -27.66875 -27.59094 -24.83611 -22.82777 -22.70549 -21.47963 -20.37510 -19.92442 -18.66752 -16.80414 -16.55173 -15.84438 -15.61465 -15.16236 -14.59011 -14.45513 -14.37718 -14.18162 -13.85045 -13.72211 -13.26961 -12.73235 -12.67333 -12.57627 -12.39762 -12.19541 -12.14219 -11.95907 -11.78804 -11.64689 -11.48510 -11.33788 -11.28398 -11.00306 -10.87715 -10.65542 -10.64835 -10.49558 -10.29046 -10.22267 -9.87068 -9.67257 -9.52436 -9.29752 -9.13863 -8.50391 -6.01251 -3.98890 3.33975 3.40988 3.46079 3.68982 4.31856 4.34754 4.39925 4.48772 4.64558 4.73641 4.95577 5.01089 5.05174 5.17309 5.19705 5.21428 5.28760 5.31428 5.32174 5.34101 5.38955 5.44732 5.46431 5.55483 5.57897 5.60376 5.61686 5.72935 5.75392 5.76873 5.79583 5.87660 5.95253 6.00945 6.04001 6.06191 6.08491 6.10370 6.20461 6.27083 6.39386 6.66577 6.76061 6.93907 7.35028 7.41499 7.48433 7.83458 8.57589 9.03740 9.61663 11.12252 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.045198 B = 0.002271 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.344501 B =12327.967238 C =12513.690750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.065 4.065 3 C -0.146 4.146 4 C -0.144 4.144 5 C -0.077 4.077 6 H 0.070 0.930 7 C -0.114 4.114 8 C -0.116 4.116 9 C 0.090 3.910 10 H 0.056 0.944 11 O -0.385 6.385 12 C 0.064 3.936 13 C -0.119 4.119 14 C -0.100 4.100 15 C -0.014 4.014 16 C -0.520 4.520 17 H 0.071 0.929 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C -0.141 4.141 25 C -0.115 4.115 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.016 0.984 46 H 0.012 0.988 47 H 0.262 0.738 48 H 0.069 0.931 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.407 3.661 23.638 32.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.065 4.065 3 C -0.203 4.203 4 C -0.201 4.201 5 C -0.095 4.095 6 H 0.089 0.911 7 C -0.152 4.152 8 C -0.153 4.153 9 C 0.032 3.968 10 H 0.074 0.926 11 O -0.305 6.305 12 C -0.013 4.013 13 C -0.156 4.156 14 C -0.138 4.138 15 C -0.051 4.051 16 C -0.558 4.558 17 H 0.089 0.911 18 C -0.137 4.137 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.179 4.179 25 C -0.152 4.152 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.034 0.966 46 H 0.030 0.970 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.369 3.487 23.409 31.887 hybrid contribution -0.095 -0.519 -0.461 0.701 sum -21.464 2.967 22.948 31.561 Atomic orbital electron populations 1.21933 0.94756 1.01710 1.01688 1.20543 0.95390 0.95598 0.94978 1.21995 1.01304 0.95426 1.01623 1.21933 1.01293 1.00091 0.96794 1.21207 0.95318 0.99404 0.93599 0.91116 1.21679 1.00567 0.99494 0.93428 1.21583 0.93945 1.01704 0.98113 1.22044 0.94312 0.95177 0.85222 0.92577 1.87913 1.37394 1.61304 1.43873 1.22674 0.84529 0.97569 0.96493 1.21662 0.98752 0.99952 0.95282 1.21396 0.93427 0.99979 0.98952 1.19568 0.96819 0.95720 0.93020 1.21173 1.03290 1.19794 1.11531 0.91095 1.25054 0.94772 0.96831 0.97019 1.69923 1.17181 1.42654 1.24683 0.86756 0.79545 0.82724 0.80150 1.20308 1.21432 1.18952 1.22052 1.00890 1.00487 0.94499 1.21675 0.95112 1.00890 0.97532 0.92761 0.92307 0.92921 0.93018 0.92310 0.92325 0.92762 0.92289 0.92920 0.91300 0.91574 0.91272 0.91420 0.93648 0.93653 0.91762 0.91768 0.92777 0.92751 0.96589 0.97019 0.92799 0.91270 0.91793 0.91647 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.12 37.16 0.30 -0.54 16 2 C -0.07 -0.41 0.57 -154.51 -0.09 -0.50 16 3 C -0.15 -0.91 7.77 37.16 0.29 -0.62 16 4 C -0.14 -0.87 8.12 37.16 0.30 -0.57 16 5 C -0.08 -0.55 1.55 -90.62 -0.14 -0.69 16 6 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 7 C -0.11 -0.86 4.50 -26.73 -0.12 -0.98 16 8 C -0.12 -1.12 5.57 -26.73 -0.15 -1.27 16 9 C 0.09 1.02 2.61 -26.73 -0.07 0.95 16 10 H 0.06 0.61 7.78 -51.93 -0.40 0.21 16 11 O -0.39 -5.61 9.99 -35.23 -0.35 -5.96 16 12 C 0.06 0.94 5.75 37.16 0.21 1.15 16 13 C -0.12 -2.04 5.58 -26.73 -0.15 -2.19 16 14 C -0.10 -2.02 5.15 -26.73 -0.14 -2.16 16 15 C -0.01 -0.34 4.04 -27.89 -0.11 -0.46 16 16 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 17 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.91 -28.42 13.96 55.43 0.77 -27.65 16 20 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 24 C -0.14 -1.42 5.54 -26.70 -0.15 -1.57 16 25 C -0.11 -0.91 4.50 -26.71 -0.12 -1.03 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.38 6.43 -51.93 -0.33 0.04 16 31 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.47 6.43 -51.93 -0.33 0.13 16 36 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 40 H 0.05 0.64 7.87 -51.93 -0.41 0.23 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 46 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 47 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.06 0.68 7.87 -51.93 -0.41 0.27 16 50 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 51 H 0.07 0.50 6.43 -51.93 -0.33 0.16 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -30.80 376.64 -9.29 -40.09 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -10.16 Total: -5.56 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -0.56 Total: -24.18 kcal Atomic # 7 Polarization: -28.42 SS G_CDS: 0.77 Total: -27.65 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.35 Total: -5.96 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.80 -9.29 -40.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689620.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.524 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds