Wall clock time and date at job start Tue Mar 31 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.53006 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47522 * 295.00072 * 5 4 3 7 7 C 1.53002 * 109.47372 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47328 * 59.99669 * 7 6 5 9 9 O 1.42903 * 109.46881 * 60.00230 * 8 7 6 10 10 C 1.42901 * 113.99893 * 89.99865 * 9 8 7 11 11 C 1.52998 * 109.47096 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47068 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47099 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47102 * 179.97438 * 13 12 11 15 15 H 1.07992 * 120.00475 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00139 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99624 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00273 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46999 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47043 * 120.00363 * 18 16 14 21 21 H 1.48501 * 109.47228 * 240.00429 * 18 16 14 22 22 C 1.52998 * 109.47109 * 300.00806 * 8 7 6 23 23 C 1.52993 * 109.47626 * 59.99289 * 22 8 7 24 24 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 26 26 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 27 27 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 28 28 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 29 29 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 30 30 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 31 31 H 1.08993 * 109.46955 * 300.00075 * 4 3 2 32 32 H 1.09000 * 109.47050 * 59.99904 * 4 3 2 33 33 H 1.09002 * 109.47016 * 55.00506 * 5 4 3 34 34 H 1.09002 * 109.47330 * 300.00242 * 6 5 4 35 35 H 1.09000 * 109.47130 * 60.00256 * 6 5 4 36 36 H 1.09002 * 109.46816 * 300.00220 * 7 6 5 37 37 H 1.09000 * 109.47511 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.46865 * 180.02562 * 8 7 6 39 39 H 1.08999 * 109.47003 * 300.00183 * 10 9 8 40 40 H 1.09001 * 109.46775 * 60.00260 * 10 9 8 41 41 H 1.09002 * 109.46680 * 300.00034 * 11 10 9 42 42 H 1.08992 * 109.47266 * 59.99743 * 11 10 9 43 43 H 1.09002 * 109.47097 * 299.99411 * 12 11 10 44 44 H 1.08999 * 109.47578 * 59.99989 * 12 11 10 45 45 H 1.09003 * 109.47663 * 300.00117 * 13 12 11 46 46 H 1.09008 * 109.47158 * 59.99795 * 13 12 11 47 47 H 0.97004 * 119.99961 * 179.97438 * 17 16 14 48 48 H 1.09007 * 109.46726 * 299.99156 * 22 8 7 49 49 H 1.09000 * 109.46821 * 180.02562 * 22 8 7 50 50 H 1.09000 * 109.47453 * 179.97438 * 23 22 8 51 51 H 1.09007 * 109.47176 * 60.00143 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 3.6759 3.5682 -1.3078 7 6 4.1864 5.0105 -1.3087 8 6 5.7113 5.0119 -1.1826 9 8 6.2811 4.3043 -2.2856 10 6 6.5683 5.1272 -3.4181 11 6 7.1708 4.2690 -4.5323 12 6 7.4789 5.1501 -5.7446 13 6 8.0820 4.2921 -6.8586 14 6 8.3849 5.1598 -8.0528 15 1 8.1694 6.2175 -8.0204 16 6 8.9383 4.6036 -9.1866 17 7 9.2013 3.3156 -9.2259 18 14 9.3145 5.6793 -10.6667 19 1 8.9287 7.0822 -10.3698 20 1 10.7677 5.6188 -10.9660 21 1 8.5466 5.1921 -11.8407 22 6 6.1154 4.3285 0.1253 23 6 5.6049 2.8863 0.1261 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9287 0.8908 32 1 3.9338 0.9284 -0.8891 33 1 3.6451 3.4244 0.8414 34 1 4.1108 3.0287 -2.1492 35 1 2.5896 3.5669 -1.3978 36 1 3.7518 5.5503 -0.4673 37 1 3.8981 5.4975 -2.2403 38 1 6.0748 6.0395 -1.1827 39 1 5.6478 5.5900 -3.7738 40 1 7.2784 5.9033 -3.1324 41 1 8.0912 3.8059 -4.1768 42 1 6.4605 3.4932 -4.8177 43 1 6.5587 5.6136 -6.1002 44 1 8.1895 5.9257 -5.4589 45 1 9.0023 3.8289 -6.5028 46 1 7.3717 3.5162 -7.1445 47 1 9.5903 2.9241 -10.0237 48 1 5.6808 4.8684 0.9667 49 1 7.2017 4.3300 0.2153 50 1 5.8932 2.3993 1.0577 51 1 6.0395 2.3465 -0.7153 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224690075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:37 Heat of formation + Delta-G solvation = -120.259032 kcal Electronic energy + Delta-G solvation = -22300.250819 eV Core-core repulsion = 19196.742225 eV Total energy + Delta-G solvation = -3103.508595 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.61318 -37.24148 -35.41628 -34.33553 -32.42284 -31.57578 -30.87072 -28.71482 -27.84037 -24.72329 -24.10257 -22.88141 -21.68849 -21.37820 -20.73705 -20.06551 -19.52009 -16.30611 -16.20490 -16.00573 -15.57798 -15.51974 -14.54615 -14.41944 -14.33463 -14.13251 -13.78573 -13.38832 -13.20719 -12.87241 -12.60019 -12.49064 -12.34153 -12.18287 -11.83733 -11.63142 -11.46412 -11.39590 -11.24483 -11.14331 -11.01746 -10.98013 -10.72642 -10.68613 -10.51879 -10.48550 -10.33803 -10.12478 -9.98619 -9.63799 -9.28051 -9.23191 -9.00391 -8.31949 -5.96797 -3.99011 3.32619 3.39810 3.44052 3.83618 4.44158 4.48920 4.56261 4.63691 4.74655 4.86445 4.88542 5.03934 5.13473 5.19274 5.25053 5.34684 5.38617 5.42493 5.44091 5.46403 5.48155 5.54926 5.58819 5.61103 5.68611 5.73313 5.77734 5.81952 5.83665 5.91336 5.94998 6.02870 6.08231 6.14671 6.15249 6.18192 6.20380 6.26897 6.30271 6.49634 6.53111 6.82710 6.96381 7.14729 7.49739 7.72386 7.87494 8.04249 8.46644 9.08619 9.64741 11.14615 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.019534 B = 0.002488 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.021968 B =11252.363860 C =12121.290509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.084 4.084 6 C -0.109 4.109 7 C -0.141 4.141 8 C 0.088 3.912 9 O -0.377 6.377 10 C 0.063 3.937 11 C -0.115 4.115 12 C -0.107 4.107 13 C 0.021 3.979 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.114 4.114 23 C -0.110 4.110 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.259 0.741 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.056 0.944 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.017 -1.570 23.154 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.153 4.153 5 C -0.103 4.103 6 C -0.147 4.147 7 C -0.178 4.178 8 C 0.030 3.970 9 O -0.296 6.296 10 C -0.013 4.013 11 C -0.153 4.153 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.151 4.151 23 C -0.148 4.148 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.075 0.925 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.909 -1.899 23.042 26.981 hybrid contribution 0.181 0.867 -0.923 1.279 sum -13.728 -1.032 22.119 26.053 Atomic orbital electron populations 1.21781 0.96107 1.01441 1.01711 1.21551 0.95669 0.97227 1.01944 1.21672 0.95704 0.96464 1.01988 1.21641 0.95104 0.96511 1.02020 1.21147 0.95611 0.95635 0.97860 1.21509 0.99820 0.95297 0.98037 1.22015 0.96168 0.97817 1.01837 1.22008 0.92482 0.95080 0.87432 1.87939 1.82142 1.35759 1.23768 1.22696 0.98327 0.93792 0.86527 1.21615 1.00749 0.98876 0.94015 1.21573 0.99942 0.98324 0.94680 1.19095 0.95858 0.94884 0.91777 1.21315 1.40770 0.94880 0.98815 0.92688 1.25046 0.95837 0.94979 0.98751 1.69983 1.44046 1.10771 1.28700 0.86546 0.77935 0.80732 0.82842 1.19775 1.21037 1.21022 1.21605 1.01227 0.96782 0.95530 1.21489 0.94973 0.96402 1.01922 0.92940 0.92942 0.92739 0.91985 0.92275 0.92367 0.91710 0.92280 0.91755 0.91854 0.90926 0.92337 0.91671 0.91893 0.92714 0.93905 0.93896 0.91816 0.91818 0.93419 0.93419 0.96556 0.96564 0.93091 0.91298 0.91470 0.92535 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.12 -0.94 4.97 -26.73 -0.13 -1.07 16 4 C -0.12 -0.98 4.68 -26.73 -0.13 -1.10 16 5 C -0.08 -0.76 2.19 -90.62 -0.20 -0.96 16 6 C -0.11 -1.11 4.81 -26.73 -0.13 -1.24 16 7 C -0.14 -1.44 5.63 -26.73 -0.15 -1.59 16 8 C 0.09 1.00 2.92 -26.73 -0.08 0.92 16 9 O -0.38 -5.44 8.64 -35.23 -0.30 -5.75 16 10 C 0.06 0.95 5.75 37.16 0.21 1.16 16 11 C -0.11 -2.07 5.58 -26.73 -0.15 -2.22 16 12 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 13 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 18 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 C -0.11 -1.12 5.66 -26.74 -0.15 -1.27 16 23 C -0.11 -1.09 5.06 -26.73 -0.14 -1.22 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 35 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.68 7.87 -51.93 -0.41 0.27 16 38 H 0.05 0.59 7.79 -51.93 -0.40 0.19 16 39 H 0.04 0.62 7.87 -51.93 -0.41 0.21 16 40 H 0.04 0.62 8.09 -51.93 -0.42 0.20 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.07 0.88 7.68 -51.93 -0.40 0.48 16 LS Contribution 391.44 15.07 5.90 5.90 Total: -1.00 -30.14 391.44 -10.90 -41.04 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -10.70 Total: -5.22 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -1.51 Total: -26.21 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.74 Total: -26.72 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.30 Total: -5.75 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.14 -10.90 -41.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.218 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds