Wall clock time and date at job start Tue Mar 31 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 6 6 C 1.53002 * 109.47628 * 180.02562 * 4 2 1 7 7 C 1.52993 * 109.47066 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47347 * 299.99927 * 7 6 4 9 9 H 1.09002 * 109.47045 * 300.00186 * 8 7 6 10 10 C 1.53002 * 109.47092 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47232 * 60.00244 * 8 7 6 12 12 C 1.53002 * 109.47143 * 300.00043 * 11 8 7 13 13 H 1.08992 * 109.47461 * 179.97438 * 12 11 8 14 14 O 1.42895 * 109.47074 * 300.00164 * 12 11 8 15 15 C 1.42903 * 113.99894 * 269.99543 * 14 12 11 16 16 C 1.52999 * 109.47140 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47292 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47288 * 180.02562 * 17 16 15 19 19 C 1.50704 * 109.47082 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99848 * 0.02562 * 19 18 17 21 21 C 1.37872 * 119.99730 * 179.97438 * 19 18 17 22 22 N 1.31508 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99719 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47074 * 60.00049 * 23 21 19 25 25 H 1.48493 * 109.47053 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47138 * 300.00327 * 23 21 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.08996 * 109.46698 * 300.00222 * 6 4 2 35 35 H 1.09002 * 109.46838 * 59.99718 * 6 4 2 36 36 H 1.09002 * 109.47726 * 60.00012 * 7 6 4 37 37 H 1.09000 * 109.46925 * 179.97438 * 7 6 4 38 38 H 1.09004 * 109.47059 * 60.00334 * 10 8 7 39 39 H 1.09004 * 109.46930 * 179.97438 * 10 8 7 40 40 H 1.08992 * 109.47060 * 299.99850 * 10 8 7 41 41 H 1.09002 * 109.47153 * 60.00008 * 11 8 7 42 42 H 1.09004 * 109.47261 * 180.02562 * 11 8 7 43 43 H 1.08997 * 109.47336 * 300.00541 * 15 14 12 44 44 H 1.09002 * 109.46799 * 60.00357 * 15 14 12 45 45 H 1.08997 * 109.47581 * 300.00554 * 16 15 14 46 46 H 1.09002 * 109.46850 * 60.00551 * 16 15 14 47 47 H 1.09005 * 109.46889 * 300.00346 * 17 16 15 48 48 H 1.08994 * 109.47079 * 60.00061 * 17 16 15 49 49 H 1.08997 * 109.47259 * 300.00095 * 18 17 16 50 50 H 1.09002 * 109.47176 * 60.00095 * 18 17 16 51 51 H 0.97008 * 119.99993 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6767 -0.2074 -2.1392 6 6 3.5700 -0.7219 -1.2489 7 6 4.0799 -1.4426 -2.4985 8 6 3.5694 -2.8849 -2.4994 9 1 3.9324 -3.3993 -1.6096 10 6 4.0799 -3.6057 -3.7487 11 6 2.0394 -2.8843 -2.4997 12 6 1.5294 -2.1636 -1.2501 13 1 0.4395 -2.1628 -1.2505 14 8 2.0053 -2.8380 -0.0837 15 6 1.1326 -3.8657 0.3902 16 6 1.7395 -4.5163 1.6349 17 6 0.8055 -5.6170 2.1419 18 6 1.4121 -6.2672 3.3869 19 6 0.4918 -7.3509 3.8867 20 1 -0.4330 -7.5557 3.3678 21 6 0.8310 -8.0816 5.0056 22 7 1.9574 -7.8325 5.6370 23 14 -0.3094 -9.4254 5.6246 24 1 -0.4857 -10.4516 4.5658 25 1 0.2798 -10.0572 6.8323 26 1 -1.6287 -8.8361 5.9672 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.3056 -1.2487 35 1 3.9330 -1.2359 -0.3589 36 1 3.7170 -0.9282 -3.3883 37 1 5.1699 -1.4426 -2.4985 38 1 5.1699 -3.6062 -3.7480 39 1 3.7165 -4.6334 -3.7491 40 1 3.7173 -3.0914 -4.6386 41 1 1.6764 -2.3698 -3.3895 42 1 1.6757 -3.9119 -2.4999 43 1 0.1643 -3.4329 0.6414 44 1 1.0032 -4.6192 -0.3867 45 1 2.7077 -4.9492 1.3832 46 1 1.8693 -3.7630 2.4119 47 1 -0.1629 -5.1844 2.3934 48 1 0.6761 -6.3701 1.3647 49 1 2.3806 -6.6996 3.1358 50 1 1.5412 -5.5137 4.1640 51 1 2.1961 -8.3469 6.4241 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224690430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:42 Heat of formation + Delta-G solvation = -112.636638 kcal Electronic energy + Delta-G solvation = -23289.762547 eV Core-core repulsion = 20186.584484 eV Total energy + Delta-G solvation = -3103.178063 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.03890 -36.75539 -35.72430 -34.43467 -32.30737 -31.15628 -30.19130 -28.36632 -27.27665 -26.30102 -24.68698 -22.43135 -22.08152 -21.65635 -20.10373 -19.82251 -19.51446 -16.28545 -16.13324 -15.99573 -15.66595 -14.76739 -14.62464 -14.39590 -14.18210 -14.04876 -13.43295 -13.34801 -13.01980 -12.80647 -12.54610 -12.35429 -12.32558 -12.20424 -12.03379 -11.71888 -11.60652 -11.23671 -11.17078 -11.11077 -11.00896 -10.98231 -10.68934 -10.61229 -10.53778 -10.48658 -10.30523 -10.16529 -9.80644 -9.63041 -9.27321 -9.18285 -9.02187 -8.31076 -5.96163 -3.98618 3.35239 3.39453 3.41907 3.84952 4.48488 4.49693 4.57560 4.68126 4.84231 4.90473 5.00292 5.13326 5.24755 5.29086 5.37760 5.39401 5.42356 5.48078 5.51890 5.53078 5.54579 5.58840 5.67156 5.70687 5.73689 5.76706 5.80205 5.85665 5.87834 5.89199 5.97812 6.14373 6.15145 6.16392 6.21205 6.21748 6.23666 6.35151 6.39603 6.52148 6.54378 6.83172 6.96851 7.15201 7.51752 7.72146 7.87908 8.04615 8.46915 9.08518 9.65085 11.15156 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.003120 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.890178 B = 8972.441533 C = 9745.449449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.074 4.074 5 H 0.073 0.927 6 C -0.113 4.113 7 C -0.111 4.111 8 C -0.088 4.088 9 H 0.080 0.920 10 C -0.147 4.147 11 C -0.135 4.135 12 C 0.092 3.908 13 H 0.059 0.941 14 O -0.373 6.373 15 C 0.063 3.937 16 C -0.114 4.114 17 C -0.107 4.107 18 C 0.022 3.978 19 C -0.521 4.521 20 H 0.054 0.946 21 C 0.056 3.944 22 N -0.896 5.896 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.047 0.953 49 H 0.016 0.984 50 H 0.016 0.984 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 17.160 -18.348 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.092 4.092 5 H 0.092 0.908 6 C -0.150 4.150 7 C -0.149 4.149 8 C -0.106 4.106 9 H 0.099 0.901 10 C -0.205 4.205 11 C -0.173 4.173 12 C 0.034 3.966 13 H 0.076 0.924 14 O -0.292 6.292 15 C -0.013 4.013 16 C -0.152 4.152 17 C -0.145 4.145 18 C -0.015 4.015 19 C -0.560 4.560 20 H 0.072 0.928 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.720 3.280 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.034 0.966 50 H 0.034 0.966 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.735 17.148 -18.105 24.997 hybrid contribution -0.904 -0.923 0.239 1.314 sum 0.831 16.225 -17.866 24.148 Atomic orbital electron populations 1.21893 0.95666 1.01698 1.01346 1.21101 0.95337 0.95708 0.98934 1.21889 1.01168 0.96132 1.01281 1.21271 0.96239 0.93666 0.98040 0.90836 1.21563 0.94605 0.99996 0.98843 1.21568 1.00003 0.95424 0.97871 1.21023 0.94827 0.95973 0.98810 0.90148 1.21843 1.00786 1.00250 0.97575 1.22082 0.96434 1.00915 0.97880 1.22074 0.97131 0.91748 0.85661 0.92357 1.87926 1.47037 1.50694 1.43531 1.22679 0.92805 0.89306 0.96510 1.21605 1.00145 0.98395 0.95039 1.21570 0.97640 0.95588 0.99706 1.19081 0.96068 0.95115 0.91258 1.21242 1.05826 1.17727 1.11166 0.92812 1.25028 0.95265 0.97442 0.96754 1.69959 1.22720 1.41045 1.19787 0.86668 0.81018 0.82157 0.78207 1.20273 1.21292 1.20262 0.93148 0.92758 0.92619 0.90035 0.92938 0.92421 0.93144 0.92152 0.90828 0.92629 0.92267 0.92866 0.92809 0.93157 0.91686 0.91876 0.93976 0.94009 0.91852 0.91839 0.93454 0.93460 0.96583 0.96578 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.84 37.16 0.33 -1.09 16 2 C -0.09 -0.92 2.36 -90.63 -0.21 -1.14 16 3 C -0.15 -1.26 8.84 37.15 0.33 -0.93 16 4 C -0.07 -0.72 1.61 -90.62 -0.15 -0.86 16 5 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 6 C -0.11 -1.11 4.71 -26.73 -0.13 -1.23 16 7 C -0.11 -1.03 5.20 -26.74 -0.14 -1.17 16 8 C -0.09 -0.90 2.57 -90.62 -0.23 -1.14 16 9 H 0.08 1.01 7.68 -51.93 -0.40 0.61 16 10 C -0.15 -1.34 9.19 37.16 0.34 -0.99 16 11 C -0.14 -1.39 4.91 -26.73 -0.13 -1.53 16 12 C 0.09 1.02 2.00 -26.73 -0.05 0.97 16 13 H 0.06 0.64 6.07 -51.93 -0.32 0.32 16 14 O -0.37 -5.17 7.97 -35.23 -0.28 -5.45 16 15 C 0.06 0.94 5.75 37.16 0.21 1.15 16 16 C -0.11 -2.04 5.58 -26.73 -0.15 -2.19 16 17 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 18 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 19 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 20 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 23 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.57 6.43 -51.93 -0.33 0.24 16 30 H 0.08 0.99 7.68 -51.93 -0.40 0.59 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 35 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 43 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 44 H 0.04 0.60 7.87 -51.93 -0.41 0.19 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 51 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 LS Contribution 385.07 15.07 5.80 5.80 Total: -1.00 -29.79 385.07 -9.91 -39.70 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -10.48 Total: -4.33 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: -0.67 Total: -25.96 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.74 Total: -26.70 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.28 Total: -5.45 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.79 -9.91 -39.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.938 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds