Wall clock time and date at job start Tue Mar 31 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.52996 * 109.46972 * 240.00267 * 2 1 3 5 5 C 1.52992 * 109.47106 * 120.00244 * 2 1 3 6 6 C 1.52997 * 109.47482 * 60.00162 * 5 2 1 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 5 2 8 8 C 1.53002 * 109.47233 * 299.99657 * 7 6 5 9 9 O 1.42905 * 109.47086 * 300.00656 * 8 7 6 10 10 C 1.42903 * 113.99544 * 209.99744 * 9 8 7 11 11 C 1.53004 * 109.46807 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.47292 * 179.97438 * 11 10 9 13 13 C 1.52993 * 109.47584 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47381 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00069 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00021 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00021 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00010 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47117 * 89.99990 * 18 16 14 20 20 H 1.48499 * 109.47426 * 209.99962 * 18 16 14 21 21 H 1.48495 * 109.47335 * 330.00199 * 18 16 14 22 22 C 1.52997 * 109.46817 * 60.00194 * 8 7 6 23 23 C 1.52999 * 109.46961 * 180.02562 * 5 2 1 24 24 H 1.09002 * 109.47596 * 299.99825 * 1 2 3 25 25 H 1.08996 * 109.47407 * 60.00219 * 1 2 3 26 26 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47289 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47261 * 300.00059 * 3 2 1 29 29 H 1.09002 * 109.47153 * 60.00231 * 3 2 1 30 30 H 1.09004 * 109.47552 * 299.99695 * 4 2 1 31 31 H 1.09004 * 109.47298 * 59.99824 * 4 2 1 32 32 H 1.09001 * 109.46993 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47103 * 299.99915 * 5 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 6 5 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 6 5 2 36 36 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 37 37 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 38 38 H 1.08993 * 109.47662 * 180.02562 * 8 7 6 39 39 H 1.08999 * 109.47407 * 299.99360 * 10 9 8 40 40 H 1.08993 * 109.47162 * 60.00283 * 10 9 8 41 41 H 1.08997 * 109.47480 * 300.00443 * 11 10 9 42 42 H 1.09006 * 109.47153 * 59.99854 * 11 10 9 43 43 H 1.08997 * 109.47380 * 300.00700 * 12 11 10 44 44 H 1.09006 * 109.46981 * 59.99945 * 12 11 10 45 45 H 1.09002 * 109.47072 * 300.00153 * 13 12 11 46 46 H 1.08996 * 109.47321 * 59.99859 * 13 12 11 47 47 H 0.97000 * 120.00122 * 179.97438 * 17 16 14 48 48 H 1.09002 * 109.47153 * 60.00231 * 22 8 7 49 49 H 1.09001 * 109.47289 * 180.02562 * 22 8 7 50 50 H 1.09000 * 109.47486 * 59.99547 * 23 5 2 51 51 H 1.09002 * 109.46716 * 299.99630 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2491 6 6 1.5301 -2.1638 1.2491 7 6 2.0396 -2.8848 2.4987 8 6 3.5696 -2.8848 2.4993 9 8 4.0464 -3.5585 1.3327 10 6 5.3061 -4.2093 1.5115 11 6 5.7161 -4.8941 0.2062 12 6 7.0650 -5.5903 0.3973 13 6 7.4753 -6.2745 -0.9081 14 6 8.8036 -6.9608 -0.7197 15 1 9.3053 -6.9133 0.2356 16 6 9.3791 -7.6484 -1.7671 17 7 10.5381 -8.2478 -1.6024 18 14 8.5119 -7.7300 -3.4195 19 1 8.9417 -6.5845 -4.2612 20 1 8.8615 -9.0028 -4.0999 21 1 7.0429 -7.6674 -3.2113 22 6 4.0795 -1.4423 2.4993 23 6 3.5700 -0.7207 1.2494 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6766 -0.2073 -2.1393 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -0.2075 2.1392 34 1 1.8934 -2.6776 0.3591 35 1 0.4401 -2.1638 1.2492 36 1 1.6759 -2.3709 3.3884 37 1 1.6767 -3.9126 2.4984 38 1 3.9327 -3.3988 3.3892 39 1 6.0599 -3.4721 1.7878 40 1 5.2207 -4.9554 2.3015 41 1 4.9622 -5.6313 -0.0699 42 1 5.8013 -4.1482 -0.5842 43 1 7.8187 -4.8528 0.6731 44 1 6.9801 -6.3361 1.1878 45 1 6.7217 -7.0120 -1.1843 46 1 7.5603 -5.5285 -1.6983 47 1 10.9428 -8.7319 -2.3392 48 1 3.7158 -0.9283 3.3891 49 1 5.1695 -1.4422 2.4993 50 1 3.9330 0.3071 1.2496 51 1 3.9336 -1.2343 0.3594 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224692201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:39 Heat of formation + Delta-G solvation = -104.624616 kcal Electronic energy + Delta-G solvation = -23152.905065 eV Core-core repulsion = 20050.074430 eV Total energy + Delta-G solvation = -3102.830635 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.12112 -37.88965 -35.32467 -34.07600 -32.21378 -31.09766 -29.56238 -28.56014 -27.47387 -27.45211 -24.81238 -22.97235 -22.58250 -21.46637 -20.24020 -19.73250 -18.48030 -16.64929 -16.39681 -15.90692 -15.72067 -15.06204 -14.49180 -14.27717 -14.23936 -14.20738 -13.75730 -13.48988 -13.06792 -12.75286 -12.64128 -12.57512 -12.46780 -12.02483 -11.96778 -11.79923 -11.78376 -11.61135 -11.39197 -11.28237 -11.07802 -10.99856 -10.83602 -10.65538 -10.62843 -10.29576 -10.12005 -9.94953 -9.86523 -9.67670 -9.52930 -9.27723 -9.14148 -8.50705 -6.01530 -3.99225 3.33623 3.40708 3.45642 3.77908 4.44900 4.48462 4.48467 4.56550 4.77057 4.84763 4.93280 5.15751 5.19636 5.25467 5.30332 5.32852 5.36505 5.38013 5.43017 5.46248 5.49982 5.54097 5.59201 5.64429 5.66444 5.75058 5.75920 5.77795 5.84407 5.87503 5.92907 6.02785 6.04995 6.06180 6.09547 6.19806 6.20744 6.23800 6.33285 6.39470 6.51812 6.66614 6.76076 6.93808 7.34843 7.43063 7.48219 7.83233 8.57321 9.03472 9.61416 11.12043 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.022790 B = 0.002975 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.340751 B = 9409.342870 C =10014.432830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C -0.143 4.143 4 C -0.145 4.145 5 C -0.072 4.072 6 C -0.114 4.114 7 C -0.114 4.114 8 C 0.089 3.911 9 O -0.377 6.377 10 C 0.063 3.937 11 C -0.117 4.117 12 C -0.100 4.100 13 C -0.013 4.013 14 C -0.520 4.520 15 H 0.071 0.929 16 C 0.065 3.935 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.141 4.141 23 C -0.112 4.112 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.016 0.984 46 H 0.011 0.989 47 H 0.262 0.738 48 H 0.065 0.935 49 H 0.062 0.938 50 H 0.058 0.942 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.331 18.409 7.379 29.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.064 4.064 3 C -0.200 4.200 4 C -0.202 4.202 5 C -0.091 4.091 6 C -0.151 4.151 7 C -0.152 4.152 8 C 0.031 3.969 9 O -0.296 6.296 10 C -0.014 4.014 11 C -0.155 4.155 12 C -0.138 4.138 13 C -0.051 4.051 14 C -0.558 4.558 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.178 4.178 23 C -0.149 4.149 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.034 0.966 46 H 0.030 0.970 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.077 0.923 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.298 18.294 7.113 28.963 hybrid contribution -0.067 -0.101 -0.577 0.590 sum -21.364 18.193 6.535 28.812 Atomic orbital electron populations 1.21926 0.94984 1.01824 1.01257 1.20527 0.95160 0.95170 0.95568 1.21929 1.01338 0.95513 1.01252 1.21978 1.01578 1.00420 0.96269 1.21137 0.95495 0.95599 0.96825 1.21613 0.99552 0.95079 0.98843 1.21619 0.93813 1.01066 0.98695 1.22007 0.94373 0.92036 0.88507 1.87926 1.37093 1.69756 1.34853 1.22665 0.84758 0.94987 0.98959 1.21643 0.98681 0.99500 0.95684 1.21393 0.93457 0.98648 1.00263 1.19560 0.97029 0.95408 0.93080 1.21178 1.03245 1.31848 0.99537 0.91110 1.25047 0.94712 0.94991 0.98874 1.69921 1.17114 1.35036 1.32406 0.86761 0.80802 0.77422 0.84220 1.20305 1.21434 1.18946 1.22026 1.00816 0.96240 0.98759 1.21598 0.94886 0.99710 0.98752 0.93001 0.93011 0.92318 0.92286 0.92999 0.93002 0.92156 0.93273 0.92124 0.91893 0.90478 0.92259 0.91319 0.91533 0.92705 0.93753 0.93758 0.91817 0.91836 0.92820 0.92786 0.96610 0.97048 0.92792 0.91673 0.91894 0.92299 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.12 37.16 0.30 -0.75 16 2 C -0.06 -0.52 0.57 -154.51 -0.09 -0.61 16 3 C -0.14 -1.09 8.12 37.16 0.30 -0.79 16 4 C -0.15 -1.33 7.77 37.16 0.29 -1.04 16 5 C -0.07 -0.62 1.55 -90.63 -0.14 -0.76 16 6 C -0.11 -1.06 4.35 -26.73 -0.12 -1.17 16 7 C -0.11 -1.07 5.66 -26.73 -0.15 -1.23 16 8 C 0.09 0.96 2.92 -26.73 -0.08 0.88 16 9 O -0.38 -5.13 8.64 -35.23 -0.30 -5.43 16 10 C 0.06 0.89 5.75 37.16 0.21 1.11 16 11 C -0.12 -1.97 5.58 -26.73 -0.15 -2.12 16 12 C -0.10 -2.00 5.15 -26.74 -0.14 -2.14 16 13 C -0.01 -0.33 4.04 -27.89 -0.11 -0.44 16 14 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 15 H 0.07 2.20 7.99 -52.48 -0.42 1.79 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.91 -28.41 13.96 55.43 0.77 -27.63 16 18 Si 0.88 22.18 27.47 -169.99 -4.67 17.52 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 22 C -0.14 -1.38 5.63 -26.70 -0.15 -1.53 16 23 C -0.11 -1.09 4.36 -26.70 -0.12 -1.20 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 27 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.86 5.97 -51.93 -0.31 0.55 16 35 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.57 7.78 -51.93 -0.40 0.17 16 39 H 0.04 0.61 7.87 -51.93 -0.41 0.20 16 40 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 46 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 47 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.65 7.87 -51.93 -0.41 0.25 16 50 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 51 H 0.08 0.88 5.97 -51.93 -0.31 0.57 16 LS Contribution 374.57 15.07 5.64 5.64 Total: -1.00 -30.42 374.57 -9.23 -39.65 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -10.11 Total: -4.28 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -0.57 Total: -25.48 kcal Atomic # 7 Polarization: -28.41 SS G_CDS: 0.77 Total: -27.63 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.30 Total: -5.43 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.42 -9.23 -39.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224692201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.970 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds