Wall clock time and date at job start Tue Mar 31 2020 05:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 120.00094 * 2 1 4 4 H 1.07994 * 120.00227 * 202.34925 * 3 2 1 5 5 C 1.38815 * 119.99881 * 22.34780 * 3 2 1 6 6 N 1.31616 * 119.99891 * 11.34563 * 5 3 2 7 7 Si 1.86804 * 119.99878 * 191.34781 * 5 3 2 8 8 H 1.48492 * 109.47225 * 59.99761 * 7 5 3 9 9 H 1.48501 * 109.46684 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46699 * 299.99672 * 7 5 3 11 11 C 1.46503 * 119.99842 * 180.02562 * 2 1 3 12 12 C 1.52989 * 109.47043 * 269.99893 * 11 2 1 13 13 C 1.53003 * 109.47117 * 180.02562 * 12 11 2 14 14 N 1.46501 * 109.47065 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00079 * 179.97438 * 14 13 12 16 16 O 1.21289 * 119.99983 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00361 * 180.02562 * 15 14 13 18 18 C 1.53003 * 109.47347 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47171 * 179.97438 * 18 17 15 20 20 C 1.54967 * 110.92053 * 71.53879 * 19 18 17 21 21 C 1.54271 * 104.15711 * 156.29257 * 20 19 18 22 22 C 1.53873 * 106.64245 * 336.44712 * 21 20 19 23 23 C 1.54269 * 106.59551 * 359.97332 * 22 21 20 24 24 H 1.08996 * 109.47012 * 274.20743 * 1 2 3 25 25 H 1.09000 * 109.47272 * 34.21080 * 1 2 3 26 26 H 1.09002 * 109.47211 * 154.20846 * 1 2 3 27 27 H 0.97005 * 119.99714 * 180.02562 * 6 5 3 28 28 H 1.09003 * 109.46644 * 149.99788 * 11 2 1 29 29 H 1.09003 * 109.46744 * 29.99932 * 11 2 1 30 30 H 1.08996 * 109.47493 * 60.00043 * 12 11 2 31 31 H 1.09003 * 109.47383 * 299.99648 * 12 11 2 32 32 H 1.08991 * 109.47060 * 60.00009 * 13 12 11 33 33 H 1.08997 * 109.46925 * 299.99426 * 13 12 11 34 34 H 0.96996 * 120.00311 * 359.97438 * 14 13 12 35 35 H 1.08996 * 109.47448 * 59.99729 * 17 15 14 36 36 H 1.09003 * 109.46898 * 299.99930 * 17 15 14 37 37 H 1.08996 * 109.47143 * 59.99451 * 18 17 15 38 38 H 1.09003 * 109.46990 * 299.99782 * 18 17 15 39 39 H 1.08996 * 110.66962 * 308.23301 * 19 18 17 40 40 H 1.09000 * 110.48003 * 37.64620 * 20 19 18 41 41 H 1.09000 * 110.53076 * 274.97492 * 20 19 18 42 42 H 1.08992 * 110.03447 * 217.13079 * 21 20 19 43 43 H 1.09006 * 110.02406 * 95.75353 * 21 20 19 44 44 H 1.08995 * 110.03108 * 119.25623 * 22 21 20 45 45 H 1.08998 * 110.03050 * 240.64192 * 22 21 20 46 46 H 1.09004 * 110.48405 * 142.29133 * 23 22 21 47 47 H 1.09002 * 110.48674 * 264.79554 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5338 2.3429 0.4571 6 7 0.3842 2.2690 1.0936 7 14 2.3367 4.0048 0.1687 8 1 2.4915 4.2332 -1.2904 9 1 1.4844 5.0735 0.7489 10 1 3.6721 4.0286 0.8180 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4416 13 6 3.2180 -3.0358 1.4411 14 7 3.4627 -3.4590 2.8221 15 6 4.1253 -4.6066 3.0679 16 8 4.5186 -5.2892 2.1457 17 6 4.3765 -5.0422 4.4885 18 6 5.1422 -6.3669 4.4879 19 6 5.3978 -6.8089 5.9302 20 6 4.0853 -7.2817 6.6050 21 6 4.5583 -8.2215 7.7332 22 6 5.9529 -8.7299 7.3276 23 6 6.2793 -8.0819 5.9662 24 1 -0.3633 0.0754 1.0249 25 1 -0.3634 0.8498 -0.5778 26 1 -0.3634 -0.9253 -0.4471 27 1 -0.0463 3.0776 1.4127 28 1 3.1499 -1.1382 -0.5144 29 1 1.6083 -2.0282 -0.5148 30 1 1.5001 -1.8416 1.9555 31 1 3.0417 -0.9517 1.9558 32 1 4.1704 -2.9048 0.9275 33 1 2.6292 -3.7954 0.9269 34 1 3.1479 -2.9133 3.5596 35 1 3.4242 -5.1728 5.0023 36 1 4.9656 -4.2827 5.0026 37 1 6.0945 -6.2359 3.9742 38 1 4.5535 -7.1266 3.9737 39 1 5.8579 -6.0040 6.5034 40 1 3.4640 -7.8239 5.8922 41 1 3.5408 -6.4328 7.0187 42 1 3.8697 -9.0604 7.8337 43 1 4.6194 -7.6742 8.6739 44 1 6.6908 -8.4286 8.0710 45 1 5.9412 -9.8156 7.2320 46 1 7.3352 -7.8164 5.9134 47 1 6.0149 -8.7547 5.1503 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231395443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:12 Heat of formation + Delta-G solvation = -55.034043 kcal Electronic energy + Delta-G solvation = -21626.824003 eV Core-core repulsion = 18422.603433 eV Total energy + Delta-G solvation = -3204.220570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.72918 -38.47867 -36.23696 -34.70275 -33.38626 -31.94139 -30.07771 -29.02499 -28.28514 -25.94806 -25.32315 -23.41502 -21.76611 -20.74170 -20.51060 -20.14333 -19.72431 -16.87606 -16.75112 -16.28016 -15.74598 -15.67002 -15.05392 -14.72304 -14.67239 -13.86689 -13.74204 -13.57584 -13.28593 -13.11626 -12.90557 -12.58684 -12.25445 -11.67293 -11.59658 -11.40820 -11.35037 -11.30078 -11.05575 -11.02969 -10.82626 -10.81036 -10.72574 -10.71976 -10.63405 -10.47940 -10.10133 -9.93325 -9.77737 -9.66527 -8.87455 -8.54549 -6.76419 -5.72419 -3.18083 2.74886 3.33448 3.38933 3.43730 3.45092 4.25986 4.33813 4.42803 4.50216 4.78292 4.85460 4.96342 5.15345 5.21856 5.27869 5.29135 5.35932 5.37824 5.43157 5.46540 5.51302 5.55194 5.61961 5.67641 5.79096 5.87117 5.87486 5.93095 5.97540 6.02028 6.10304 6.14989 6.22655 6.28338 6.45348 6.66273 6.77432 6.84347 7.02173 7.39675 7.65204 7.73140 7.81112 8.34427 8.40757 9.24557 9.87910 10.36848 11.32730 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031267 B = 0.002264 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.301416 B =12363.042606 C =12526.283717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.253 4.253 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.910 5.910 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.156 3.844 12 C -0.149 4.149 13 C 0.119 3.881 14 N -0.728 5.728 15 C 0.507 3.493 16 O -0.549 6.549 17 C -0.141 4.141 18 C -0.094 4.094 19 C -0.094 4.094 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.121 4.121 24 H 0.027 0.973 25 H 0.044 0.956 26 H -0.004 1.004 27 H 0.252 0.748 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.401 0.599 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.764 -18.920 12.438 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.028 3.972 12 C -0.190 4.190 13 C -0.005 4.005 14 N -0.379 5.379 15 C 0.293 3.707 16 O -0.427 6.427 17 C -0.181 4.181 18 C -0.132 4.132 19 C -0.112 4.112 20 C -0.160 4.160 21 C -0.164 4.164 22 C -0.163 4.163 23 C -0.158 4.158 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.015 0.985 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.234 0.766 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.907 -19.248 11.805 23.924 hybrid contribution 0.154 1.339 0.459 1.424 sum 8.061 -17.909 12.264 23.154 Atomic orbital electron populations 1.20796 0.82517 0.95571 0.99199 1.43976 1.01957 1.00699 1.85915 1.19187 0.97942 0.85470 1.35691 0.91428 1.25037 0.97740 0.98542 0.98522 1.70058 1.17866 1.27131 1.40482 0.86322 0.78467 0.83742 0.77924 1.21073 1.21651 1.20977 1.20717 0.95953 0.88212 0.92329 1.22538 0.99570 0.94044 1.02877 1.21489 1.00170 0.97029 0.81797 1.46227 1.57917 1.23910 1.09851 1.20755 0.77542 0.80775 0.91624 1.90685 1.51296 1.54060 1.46646 1.21710 1.02790 0.99503 0.94142 1.21324 1.00832 0.95591 0.95493 1.22202 0.95851 0.97367 0.95830 1.22487 0.97207 0.98873 0.97428 1.22134 0.96567 0.99065 0.98597 1.22130 0.96898 1.00079 0.97219 1.22404 0.99500 0.96675 0.97244 0.95461 0.93707 0.98526 0.93745 0.93653 0.94302 0.92216 0.91354 0.91922 0.92079 0.76554 0.89015 0.89062 0.91181 0.91140 0.90581 0.91448 0.91640 0.92058 0.92022 0.92052 0.92063 0.91754 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 9.01 59.85 0.54 4.59 16 2 N -0.60 -15.17 2.93 -181.12 -0.53 -15.70 16 3 C -0.25 -6.94 9.67 -15.06 -0.15 -7.09 16 4 H 0.07 1.81 7.84 -52.49 -0.41 1.40 16 5 C 0.00 -0.01 5.13 -17.43 -0.09 -0.10 16 6 N -0.91 -26.40 10.59 55.49 0.59 -25.81 16 7 Si 0.91 21.81 29.57 -169.99 -5.03 16.79 16 8 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 C 0.16 3.16 5.71 -4.05 -0.02 3.14 16 12 C -0.15 -2.64 5.65 -26.74 -0.15 -2.80 16 13 C 0.12 1.82 5.67 -4.04 -0.02 1.80 16 14 N -0.73 -9.60 5.56 -60.30 -0.33 -9.94 16 15 C 0.51 6.82 7.83 -10.99 -0.09 6.74 16 16 O -0.55 -9.52 15.98 5.55 0.09 -9.43 16 17 C -0.14 -1.31 5.59 -27.88 -0.16 -1.47 16 18 C -0.09 -0.88 4.01 -26.73 -0.11 -0.99 16 19 C -0.09 -0.71 2.86 -88.59 -0.25 -0.96 16 20 C -0.12 -0.87 5.71 -25.03 -0.14 -1.01 16 21 C -0.13 -0.83 6.80 -25.61 -0.17 -1.00 16 22 C -0.13 -0.82 6.80 -25.61 -0.17 -1.00 16 23 C -0.12 -0.88 6.27 -25.07 -0.16 -1.03 16 24 H 0.03 0.72 7.42 -51.93 -0.39 0.33 16 25 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 26 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 29 H 0.04 0.72 7.86 -51.93 -0.41 0.32 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.40 4.44 8.47 -40.82 -0.35 4.09 16 35 H 0.09 0.71 7.66 -51.93 -0.40 0.31 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.74 8.10 -51.93 -0.42 0.31 16 38 H 0.07 0.74 7.96 -51.93 -0.41 0.33 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.51 7.95 -51.93 -0.41 0.09 16 41 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.51 8.05 -51.93 -0.42 0.10 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -31.43 373.02 -9.76 -41.18 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -9.02 Total: -1.53 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.14 Total: -1.19 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.28 Total: -51.45 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.43 -9.76 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231395443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.852 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds