Wall clock time and date at job start Tue Mar 31 2020 05:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 120.00444 * 2 1 4 4 H 1.08003 * 120.00185 * 202.34720 * 3 2 1 5 5 C 1.38818 * 119.99814 * 22.34646 * 3 2 1 6 6 N 1.31623 * 119.99841 * 11.34525 * 5 3 2 7 7 Si 1.86796 * 120.00065 * 191.34277 * 5 3 2 8 8 H 1.48502 * 109.47055 * 60.00288 * 7 5 3 9 9 H 1.48502 * 109.47238 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47397 * 300.00333 * 7 5 3 11 11 C 1.46508 * 119.99652 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.46615 * 269.99669 * 11 2 1 13 13 C 1.53004 * 109.46895 * 179.97438 * 12 11 2 14 14 N 1.46503 * 109.47317 * 180.02562 * 13 12 11 15 15 C 1.34766 * 120.00076 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00298 * 359.97438 * 15 14 13 17 17 C 1.50709 * 120.00094 * 179.97438 * 15 14 13 18 18 C 1.52995 * 109.46941 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47181 * 65.00208 * 18 17 15 20 20 C 1.53001 * 109.47121 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.47380 * 299.99880 * 20 19 18 22 22 C 1.53001 * 109.46895 * 59.99982 * 21 20 19 23 23 C 1.53001 * 109.47431 * 299.99955 * 22 21 20 24 24 H 1.09001 * 109.47159 * 274.20917 * 1 2 3 25 25 H 1.09005 * 109.46926 * 34.20665 * 1 2 3 26 26 H 1.08999 * 109.47674 * 154.20722 * 1 2 3 27 27 H 0.97000 * 119.99888 * 179.97438 * 6 5 3 28 28 H 1.08994 * 109.46892 * 150.00374 * 11 2 1 29 29 H 1.08993 * 109.47290 * 29.99519 * 11 2 1 30 30 H 1.08999 * 109.47461 * 60.00259 * 12 11 2 31 31 H 1.08993 * 109.47609 * 300.00229 * 12 11 2 32 32 H 1.09003 * 109.46505 * 60.00423 * 13 12 11 33 33 H 1.08993 * 109.47299 * 300.00566 * 13 12 11 34 34 H 0.97002 * 119.99689 * 359.97438 * 14 13 12 35 35 H 1.08995 * 109.46738 * 59.99407 * 17 15 14 36 36 H 1.09003 * 109.46825 * 299.99644 * 17 15 14 37 37 H 1.08999 * 109.47842 * 304.99657 * 18 17 15 38 38 H 1.08991 * 109.47218 * 299.99761 * 19 18 17 39 39 H 1.08999 * 109.46971 * 59.99801 * 19 18 17 40 40 H 1.09004 * 109.47069 * 179.97438 * 20 19 18 41 41 H 1.08999 * 109.46837 * 60.00360 * 20 19 18 42 42 H 1.08999 * 109.47527 * 300.00058 * 21 20 19 43 43 H 1.08996 * 109.47176 * 179.97438 * 21 20 19 44 44 H 1.08999 * 109.47509 * 179.97438 * 22 21 20 45 45 H 1.08998 * 109.47431 * 60.00000 * 22 21 20 46 46 H 1.08998 * 109.46849 * 300.00401 * 23 22 21 47 47 H 1.08997 * 109.47498 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1690 1.2209 -0.3556 5 6 1.5339 2.3429 0.4571 6 7 0.3842 2.2690 1.0936 7 14 2.3369 4.0047 0.1689 8 1 2.4917 4.2332 -1.2903 9 1 1.4847 5.0735 0.7490 10 1 3.6722 4.0285 0.8181 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 6 3.2168 -3.0364 1.4413 14 7 3.4605 -3.4602 2.8223 15 6 4.1228 -4.6079 3.0681 16 8 4.5168 -5.2902 2.1460 17 6 4.3740 -5.0436 4.4888 18 6 5.1382 -6.3690 4.4882 19 6 6.5255 -6.1575 3.8784 20 6 7.2900 -7.4829 3.8784 21 6 7.4361 -7.9875 5.3154 22 6 6.0488 -8.1989 5.9251 23 6 5.2843 -6.8736 5.9252 24 1 -0.3633 0.0754 1.0249 25 1 -0.3633 0.8499 -0.5778 26 1 -0.3634 -0.9252 -0.4471 27 1 -0.0459 3.0775 1.4134 28 1 3.1499 -1.1383 -0.5143 29 1 1.6084 -2.0282 -0.5146 30 1 1.5001 -1.8415 1.9556 31 1 3.0415 -0.9517 1.9559 32 1 4.1693 -2.9063 0.9274 33 1 2.6274 -3.7956 0.9272 34 1 3.1457 -2.9144 3.5598 35 1 3.4216 -5.1739 5.0026 36 1 4.9633 -4.2842 5.0029 37 1 4.5904 -7.1041 3.8987 38 1 6.4215 -5.7977 2.8549 39 1 7.0733 -5.4225 4.4681 40 1 8.2781 -7.3323 3.4436 41 1 6.7422 -8.2182 3.2890 42 1 7.9838 -7.2522 5.9048 43 1 7.9803 -8.9318 5.3153 44 1 6.1528 -8.5588 6.9487 45 1 5.5011 -8.9342 5.3358 46 1 5.8321 -6.1383 6.5146 47 1 4.2959 -7.0243 6.3592 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233648027.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:10 Heat of formation + Delta-G solvation = -56.035851 kcal Electronic energy + Delta-G solvation = -22089.601859 eV Core-core repulsion = 18885.337847 eV Total energy + Delta-G solvation = -3204.264012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.01702 -38.26558 -36.20997 -34.68691 -32.89386 -31.91206 -30.87174 -30.02015 -27.48438 -25.90135 -24.98455 -22.79893 -22.23878 -21.48381 -20.60207 -19.91470 -19.72076 -16.81897 -16.75254 -15.91219 -15.68399 -15.40343 -14.76146 -14.65867 -14.35682 -14.16179 -13.98058 -13.50207 -13.33915 -12.95585 -12.72114 -12.52491 -12.29310 -12.12167 -11.85726 -11.52250 -11.30151 -11.25978 -11.11881 -11.05573 -10.81538 -10.73057 -10.61469 -10.48740 -10.41557 -10.20181 -10.10185 -9.91865 -9.76570 -9.51912 -8.85574 -8.54666 -6.76625 -5.72603 -3.18274 2.74976 3.33711 3.38853 3.43644 3.44970 4.45648 4.49944 4.53885 4.55295 4.84749 4.93125 5.04840 5.17889 5.28366 5.31108 5.33206 5.38826 5.44242 5.46242 5.50050 5.54940 5.57316 5.72182 5.84790 5.87256 5.94674 5.96775 6.01330 6.03108 6.11533 6.14709 6.25206 6.35453 6.38203 6.45231 6.67591 6.77323 6.84136 7.02020 7.39440 7.65696 7.72901 7.80872 8.35438 8.40600 9.24355 9.87696 10.36639 11.32584 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032815 B = 0.002483 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.053028 B =11273.669577 C =11445.845830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.253 4.253 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.910 5.910 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.156 3.844 12 C -0.150 4.150 13 C 0.120 3.880 14 N -0.728 5.728 15 C 0.508 3.492 16 O -0.544 6.544 17 C -0.140 4.140 18 C -0.069 4.069 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.115 4.115 24 H 0.027 0.973 25 H 0.044 0.956 26 H -0.004 1.004 27 H 0.252 0.748 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.400 0.600 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.236 -18.345 10.263 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.326 5.326 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.028 3.972 12 C -0.190 4.190 13 C -0.004 4.004 14 N -0.379 5.379 15 C 0.294 3.706 16 O -0.422 6.422 17 C -0.180 4.180 18 C -0.088 4.088 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.153 4.153 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.015 0.985 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.234 0.766 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.380 -18.665 9.625 23.000 hybrid contribution 0.144 1.358 0.458 1.440 sum 9.523 -17.307 10.083 22.179 Atomic orbital electron populations 1.20799 0.82511 0.95580 0.99205 1.43981 1.01966 1.00710 1.85917 1.19188 0.97937 0.85469 1.35706 0.91433 1.25037 0.97733 0.98535 0.98515 1.70059 1.17877 1.27140 1.40467 0.86323 0.78466 0.83738 0.77926 1.21071 1.21648 1.20978 1.20715 0.95941 0.88205 0.92328 1.22540 0.99580 0.94059 1.02869 1.21483 1.00156 0.96997 0.81793 1.46238 1.57960 1.23897 1.09833 1.20696 0.77513 0.80766 0.91587 1.90650 1.50929 1.53989 1.46589 1.21779 1.02462 0.99394 0.94340 1.20895 0.96438 0.95410 0.96092 1.21715 0.94465 0.96972 1.02653 1.21501 1.00068 0.97653 0.96274 1.21556 0.96867 1.00704 0.96645 1.21510 0.96186 0.97433 1.00458 1.21611 1.00169 0.97192 0.96333 0.95459 0.93696 0.98518 0.93742 0.93662 0.94308 0.92239 0.91362 0.91926 0.92090 0.76593 0.89053 0.89045 0.90452 0.89830 0.92786 0.92322 0.92047 0.92192 0.92416 0.92237 0.92030 0.91955 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 9.01 59.85 0.54 4.59 16 2 N -0.60 -15.18 2.93 -181.11 -0.53 -15.71 16 3 C -0.25 -6.94 9.67 -15.06 -0.15 -7.09 16 4 H 0.07 1.81 7.84 -52.48 -0.41 1.40 16 5 C 0.00 -0.01 5.13 -17.43 -0.09 -0.10 16 6 N -0.91 -26.39 10.59 55.49 0.59 -25.81 16 7 Si 0.91 21.80 29.57 -169.99 -5.03 16.78 16 8 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 C 0.16 3.16 5.71 -4.04 -0.02 3.14 16 12 C -0.15 -2.64 5.65 -26.73 -0.15 -2.79 16 13 C 0.12 1.81 5.67 -4.04 -0.02 1.78 16 14 N -0.73 -9.48 5.56 -60.29 -0.33 -9.82 16 15 C 0.51 6.68 7.55 -10.99 -0.08 6.60 16 16 O -0.54 -8.99 13.96 5.56 0.08 -8.91 16 17 C -0.14 -1.31 5.17 -27.88 -0.14 -1.45 16 18 C -0.07 -0.67 1.84 -90.62 -0.17 -0.83 16 19 C -0.12 -1.25 4.94 -26.73 -0.13 -1.38 16 20 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 21 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 22 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 23 C -0.12 -0.88 5.20 -26.73 -0.14 -1.02 16 24 H 0.03 0.72 7.42 -51.93 -0.39 0.33 16 25 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 26 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 29 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.40 4.42 8.47 -40.82 -0.35 4.07 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.86 7.96 -51.93 -0.41 0.45 16 38 H 0.08 1.09 5.95 -51.93 -0.31 0.78 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 366.25 15.07 5.52 5.52 Total: -1.00 -30.92 366.25 -9.69 -40.60 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.95 Total: -0.76 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.03 Total: -1.89 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.28 Total: -51.33 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.92 -9.69 -40.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233648027.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.432 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds