Wall clock time and date at job start Tue Mar 31 2020 05:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36930 * 120.00131 * 2 1 4 4 H 1.08000 * 120.00039 * 202.35085 * 3 2 1 5 5 C 1.38818 * 120.00160 * 22.33832 * 3 2 1 6 6 N 1.31611 * 119.99633 * 11.35523 * 5 3 2 7 7 Si 1.86800 * 120.00211 * 191.34765 * 5 3 2 8 8 H 1.48508 * 109.46743 * 60.00336 * 7 5 3 9 9 H 1.48501 * 109.47040 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47087 * 300.00492 * 7 5 3 11 11 C 1.46500 * 119.99406 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.46935 * 269.99744 * 11 2 1 13 13 C 1.53003 * 109.46910 * 180.02562 * 12 11 2 14 14 N 1.46498 * 109.47115 * 180.02562 * 13 12 11 15 15 C 1.34776 * 120.00037 * 179.97438 * 14 13 12 16 16 O 1.21287 * 120.00068 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00427 * 179.97438 * 15 14 13 18 18 C 1.50480 * 109.62386 * 60.96176 * 17 15 14 19 19 C 1.54074 * 112.49695 * 213.85939 * 18 17 15 20 20 C 1.54065 * 112.81897 * 318.28459 * 19 18 17 21 21 C 1.50474 * 112.49253 * 318.28321 * 20 19 18 22 22 C 1.54236 * 108.51271 * 94.15881 * 21 20 19 23 23 C 1.45541 * 112.41252 * 279.99659 * 22 21 20 24 24 H 1.09001 * 109.47052 * 274.21383 * 1 2 3 25 25 H 1.08999 * 109.47011 * 34.21189 * 1 2 3 26 26 H 1.09001 * 109.47536 * 154.21103 * 1 2 3 27 27 H 0.97007 * 120.00131 * 179.97438 * 6 5 3 28 28 H 1.09010 * 109.46739 * 150.00356 * 11 2 1 29 29 H 1.08992 * 109.47617 * 30.00537 * 11 2 1 30 30 H 1.08997 * 109.47099 * 60.00555 * 12 11 2 31 31 H 1.09001 * 109.47400 * 300.00208 * 12 11 2 32 32 H 1.08997 * 109.47476 * 59.99941 * 13 12 11 33 33 H 1.09007 * 109.46955 * 299.99909 * 13 12 11 34 34 H 0.96998 * 120.00074 * 359.97438 * 14 13 12 35 35 H 1.09003 * 109.78308 * 300.48767 * 17 15 14 36 36 H 1.09000 * 108.87841 * 334.63483 * 18 17 15 37 37 H 1.08992 * 108.87853 * 93.18539 * 18 17 15 38 38 H 1.08997 * 108.81457 * 197.41874 * 19 18 17 39 39 H 1.09004 * 108.81421 * 79.14529 * 19 18 17 40 40 H 1.08995 * 108.87506 * 197.50599 * 20 19 18 41 41 H 1.09002 * 108.87787 * 79.06053 * 20 19 18 42 42 H 1.09001 * 109.62528 * 213.86058 * 21 20 19 43 43 H 1.08995 * 109.63128 * 334.25309 * 21 20 19 44 44 H 1.09003 * 108.89747 * 40.75439 * 22 21 20 45 45 H 1.09005 * 108.89420 * 159.24062 * 22 21 20 46 46 H 1.08992 * 108.89984 * 182.69334 * 23 22 21 47 47 H 1.09001 * 108.89580 * 301.28700 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2210 -0.3557 5 6 1.5338 2.3430 0.4569 6 7 0.3842 2.2691 1.0935 7 14 2.3367 4.0048 0.1685 8 1 2.4916 4.2330 -1.2907 9 1 1.4850 5.0735 0.7496 10 1 3.6720 4.0287 0.8178 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7098 1.4433 13 6 3.2178 -3.0346 1.4439 14 7 3.4615 -3.4572 2.8252 15 6 4.1238 -4.6047 3.0720 16 8 4.5177 -5.2878 2.1505 17 6 4.3750 -5.0392 4.4930 18 6 3.0617 -5.2425 5.1990 19 6 3.1308 -4.8682 6.6920 20 6 4.4291 -5.3481 7.3687 21 6 4.8216 -6.7366 6.9418 22 6 5.8140 -6.6254 5.7664 23 6 5.1459 -6.3751 4.4978 24 1 -0.3633 0.0755 1.0249 25 1 -0.3633 0.8498 -0.5778 26 1 -0.3634 -0.9253 -0.4471 27 1 -0.0461 3.0776 1.4131 28 1 3.1499 -1.1387 -0.5133 29 1 1.6084 -2.0286 -0.5130 30 1 1.5000 -1.8399 1.9571 31 1 3.0415 -0.9499 1.9568 32 1 4.1702 -2.9042 0.9301 33 1 2.6289 -3.7947 0.9302 34 1 3.1461 -2.9111 3.5623 35 1 4.9568 -4.2788 5.0139 36 1 2.3027 -4.6270 4.7160 37 1 2.7732 -6.2899 5.1125 38 1 2.2803 -5.3155 7.2062 39 1 3.0653 -3.7843 6.7861 40 1 4.2879 -5.3380 8.4494 41 1 5.2349 -4.6597 7.1138 42 1 5.2969 -7.2550 7.7745 43 1 3.9353 -7.2868 6.6258 44 1 6.5084 -5.8093 5.9666 45 1 6.3776 -7.5554 5.6910 46 1 5.8922 -6.3549 3.7037 47 1 4.4447 -7.1864 4.3021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235490872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:08 Heat of formation + Delta-G solvation = -47.271878 kcal Electronic energy + Delta-G solvation = -22522.513422 eV Core-core repulsion = 19318.629445 eV Total energy + Delta-G solvation = -3203.883978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.33847 -38.14809 -36.20568 -34.72970 -32.83026 -32.55371 -31.72948 -29.84485 -26.31576 -25.81631 -24.83307 -24.70260 -22.07424 -21.15022 -20.53846 -20.14213 -19.27843 -17.25048 -16.74920 -15.96181 -15.56326 -15.19743 -14.92083 -14.77097 -14.59189 -14.15374 -13.75960 -13.60529 -13.34490 -13.11901 -12.97635 -12.64703 -12.41626 -12.23161 -11.58832 -11.49160 -11.30662 -11.04987 -11.02155 -10.90010 -10.80295 -10.73020 -10.71947 -10.61523 -10.47753 -10.39221 -10.09976 -9.91780 -9.77034 -9.56399 -8.86750 -8.54505 -6.76396 -5.72409 -3.18059 2.74029 3.31368 3.38846 3.43776 3.45119 4.35231 4.38905 4.50131 4.55707 4.76516 4.91867 4.94925 5.00809 5.09312 5.17674 5.26730 5.32983 5.45918 5.51961 5.55110 5.66503 5.73548 5.77451 5.86569 5.90636 5.91843 5.95047 5.97546 6.02251 6.09957 6.14865 6.15294 6.20166 6.28410 6.45331 6.66547 6.77432 6.84333 7.02172 7.39643 7.65366 7.73098 7.81096 8.34389 8.40743 9.24567 9.87929 10.36903 11.32735 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024360 B = 0.002938 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.144392 B = 9527.525428 C = 9891.497736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.910 5.910 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.156 3.844 12 C -0.149 4.149 13 C 0.119 3.881 14 N -0.726 5.726 15 C 0.513 3.487 16 O -0.547 6.547 17 C -0.104 4.104 18 C -0.114 4.114 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.101 4.101 24 H 0.027 0.973 25 H 0.044 0.956 26 H -0.004 1.004 27 H 0.252 0.748 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.400 0.600 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.547 -16.532 12.179 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.028 3.972 12 C -0.190 4.190 13 C -0.004 4.004 14 N -0.377 5.377 15 C 0.299 3.701 16 O -0.424 6.424 17 C -0.125 4.125 18 C -0.151 4.151 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.138 4.138 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.015 0.985 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.234 0.766 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.689 -16.851 11.535 21.489 hybrid contribution 0.161 1.355 0.414 1.425 sum 6.850 -15.497 11.949 20.732 Atomic orbital electron populations 1.20800 0.82516 0.95587 0.99203 1.43977 1.01961 1.00702 1.85905 1.19192 0.97958 0.85477 1.35740 0.91428 1.25030 0.97721 0.98515 0.98493 1.70056 1.17874 1.27130 1.40453 0.86327 0.78477 0.83751 0.77923 1.21072 1.21649 1.20972 1.20713 0.95946 0.88211 0.92301 1.22543 0.99563 0.94044 1.02892 1.21498 1.00194 0.97037 0.81717 1.46190 1.57914 1.23784 1.09804 1.20652 0.77415 0.80733 0.91298 1.90671 1.51198 1.54037 1.46541 1.21091 0.98773 0.99807 0.92878 1.21372 0.95785 1.02730 0.95256 1.21918 0.97784 1.01162 0.94545 1.21369 0.97759 0.96950 0.99772 1.21370 0.99418 0.97099 0.97817 1.20508 0.98212 1.01868 0.94885 1.20299 1.00223 0.95276 0.98039 0.95466 0.93685 0.98517 0.93749 0.93663 0.94304 0.92224 0.91356 0.91891 0.92060 0.76551 0.88356 0.91505 0.91326 0.91940 0.91874 0.92334 0.92009 0.92132 0.91545 0.92129 0.92042 0.90797 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 9.01 59.85 0.54 4.59 16 2 N -0.60 -15.18 2.93 -181.12 -0.53 -15.71 16 3 C -0.25 -6.97 9.67 -15.06 -0.15 -7.12 16 4 H 0.07 1.81 7.84 -52.49 -0.41 1.40 16 5 C 0.00 0.01 5.13 -17.43 -0.09 -0.08 16 6 N -0.91 -26.36 10.58 55.49 0.59 -25.78 16 7 Si 0.91 21.80 29.57 -169.99 -5.03 16.78 16 8 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 C 0.16 3.17 5.71 -4.04 -0.02 3.15 16 12 C -0.15 -2.65 5.65 -26.73 -0.15 -2.80 16 13 C 0.12 1.83 5.67 -4.04 -0.02 1.81 16 14 N -0.73 -9.71 5.17 -60.29 -0.31 -10.02 16 15 C 0.51 7.07 7.04 -10.99 -0.08 6.99 16 16 O -0.55 -9.57 15.60 5.55 0.09 -9.48 16 17 C -0.10 -1.05 2.21 -92.38 -0.20 -1.25 16 18 C -0.11 -1.00 4.84 -27.43 -0.13 -1.13 16 19 C -0.12 -0.86 5.85 -25.61 -0.15 -1.01 16 20 C -0.12 -0.84 5.31 -27.44 -0.15 -0.98 16 21 C -0.12 -0.83 5.60 -27.35 -0.15 -0.98 16 22 C -0.12 -0.91 5.26 -29.60 -0.16 -1.06 16 23 C -0.10 -0.99 4.30 -29.60 -0.13 -1.11 16 24 H 0.03 0.72 7.42 -51.93 -0.39 0.33 16 25 H 0.04 1.20 7.19 -51.93 -0.37 0.82 16 26 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.05 0.90 8.03 -51.92 -0.42 0.48 16 29 H 0.04 0.72 7.86 -51.93 -0.41 0.32 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 34 H 0.40 4.62 8.06 -40.82 -0.33 4.29 16 35 H 0.10 0.90 6.98 -51.93 -0.36 0.54 16 36 H 0.07 0.62 7.03 -51.93 -0.36 0.26 16 37 H 0.07 0.60 6.63 -51.93 -0.34 0.26 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.44 6.63 -51.93 -0.34 0.09 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.48 6.99 -51.93 -0.36 0.11 16 44 H 0.06 0.46 7.47 -51.93 -0.39 0.07 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.86 7.32 -51.93 -0.38 0.48 16 47 H 0.06 0.65 7.47 -51.93 -0.39 0.26 16 LS Contribution 358.77 15.07 5.41 5.41 Total: -1.00 -31.07 358.77 -9.43 -40.50 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.61 Total: -0.70 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.04 Total: -0.99 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.25 Total: -51.51 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.07 -9.43 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235490872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.767 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds