Wall clock time and date at job start Tue Mar 31 2020 05:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99761 * 2 1 4 4 H 1.48502 * 109.47241 * 90.00002 * 3 2 1 5 5 H 1.48500 * 109.47071 * 209.99762 * 3 2 1 6 6 H 1.48498 * 109.47040 * 329.99995 * 3 2 1 7 7 C 1.37879 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99724 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99812 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.46993 * 185.24805 * 9 7 2 11 11 C 1.46896 * 111.00171 * 199.99350 * 10 9 7 12 12 C 1.53001 * 109.46721 * 67.01792 * 11 10 9 13 13 C 1.53006 * 109.46954 * 180.88175 * 12 11 10 14 14 C 1.53001 * 109.46954 * 179.97438 * 13 12 11 15 15 N 1.46897 * 109.46791 * 179.97438 * 14 13 12 16 16 C 1.46903 * 110.99495 * 76.04075 * 10 9 7 17 17 C 1.53008 * 109.47606 * 52.15993 * 16 10 9 18 18 C 1.52988 * 109.46604 * 164.04079 * 17 16 10 19 19 C 1.52981 * 109.51100 * 315.99085 * 18 17 16 20 20 C 1.53006 * 109.47347 * 112.92917 * 19 18 17 21 21 C 1.52994 * 109.43480 * 284.04802 * 20 19 18 22 22 C 1.52986 * 109.49182 * 75.95721 * 21 20 19 23 23 C 1.52993 * 109.50944 * 247.06863 * 22 21 20 24 24 H 0.97000 * 119.99858 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47106 * 305.24788 * 9 7 2 26 26 H 1.08999 * 109.46708 * 65.25247 * 9 7 2 27 27 H 1.08995 * 109.46922 * 187.01581 * 11 10 9 28 28 H 1.08999 * 109.46957 * 307.01830 * 11 10 9 29 29 H 1.09006 * 109.46915 * 300.87586 * 12 11 10 30 30 H 1.08991 * 109.47377 * 60.88158 * 12 11 10 31 31 H 1.08999 * 109.46444 * 300.00028 * 13 12 11 32 32 H 1.09004 * 109.47087 * 59.99421 * 13 12 11 33 33 H 1.09006 * 109.46915 * 299.99411 * 14 13 12 34 34 H 1.08991 * 109.47377 * 59.99983 * 14 13 12 35 35 H 1.00903 * 111.00584 * 56.04293 * 15 14 13 36 36 H 1.00901 * 111.00056 * 179.97438 * 15 14 13 37 37 H 1.09005 * 109.46984 * 172.15884 * 16 10 9 38 38 H 1.09002 * 109.46980 * 284.04324 * 17 16 10 39 39 H 1.09001 * 109.47296 * 44.04085 * 17 16 10 40 40 H 1.09004 * 109.46701 * 195.97460 * 18 17 16 41 41 H 1.09009 * 109.45445 * 75.99780 * 18 17 16 42 42 H 1.09006 * 109.46867 * 352.93516 * 19 18 17 43 43 H 1.09004 * 109.47203 * 232.93462 * 19 18 17 44 44 H 1.09000 * 109.47662 * 164.05177 * 20 19 18 45 45 H 1.09008 * 109.47886 * 44.04030 * 20 19 18 46 46 H 1.09001 * 109.46860 * 315.95696 * 21 20 19 47 47 H 1.08998 * 109.46760 * 195.96229 * 21 20 19 48 48 H 1.08997 * 109.46769 * 127.05006 * 22 21 20 49 49 H 1.09002 * 109.46270 * 7.07509 * 22 21 20 50 50 H 1.09006 * 109.47308 * 284.01221 * 23 22 21 51 51 H 1.08999 * 109.47638 * 164.00458 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1939 0.0000 10 7 4.0013 -2.5732 -0.1260 11 6 5.3920 -2.6822 0.3344 12 6 5.4507 -2.4337 1.8429 13 6 6.9020 -2.5256 2.3188 14 6 6.9608 -2.2764 3.8272 15 7 8.3541 -2.3652 4.2842 16 6 3.8643 -3.0563 -1.5065 17 6 4.5114 -2.0539 -2.4644 18 6 4.7280 -2.7167 -3.8261 19 6 5.2950 -4.1233 -3.6253 20 6 4.2609 -5.1587 -4.0723 21 6 3.1649 -5.2745 -3.0112 22 6 2.2324 -4.0654 -3.1066 23 6 2.3807 -3.2054 -1.8499 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6014 -0.8398 26 1 3.8752 -0.7631 0.9328 27 1 5.7699 -3.6809 0.1156 28 1 6.0041 -1.9414 -0.1800 29 1 5.0583 -1.4409 2.0631 30 1 4.8512 -3.1840 2.3583 31 1 7.2944 -3.5183 2.0985 32 1 7.5016 -1.7753 1.8032 33 1 6.5685 -1.2834 4.0470 34 1 6.3612 -3.0264 4.3430 35 1 8.9435 -1.7242 3.7744 36 1 8.4197 -2.2039 5.2780 37 1 4.3587 -4.0230 -1.6039 38 1 3.8581 -1.1891 -2.5810 39 1 5.4711 -1.7323 -2.0600 40 1 5.4294 -2.1225 -4.4119 41 1 3.7765 -2.7806 -4.3543 42 1 5.5277 -4.2741 -2.5711 43 1 6.2028 -4.2372 -4.2177 44 1 4.7469 -6.1260 -4.2000 45 1 3.8192 -4.8462 -5.0186 46 1 3.6196 -5.3053 -2.0211 47 1 2.5936 -6.1878 -3.1773 48 1 1.2012 -4.4079 -3.1927 49 1 2.4931 -3.4740 -3.9842 50 1 1.8617 -3.6835 -1.0191 51 1 1.9488 -2.2211 -2.0301 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235662866.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:26 Heat of formation + Delta-G solvation = -7.032784 kcal Electronic energy + Delta-G solvation = -24374.323396 eV Core-core repulsion = 21308.017411 eV Total energy + Delta-G solvation = -3066.305985 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.57813 -36.80880 -35.49455 -32.78798 -32.36572 -32.17489 -30.45111 -28.08978 -26.50517 -25.50454 -24.30532 -22.41035 -21.62285 -21.01883 -20.67751 -19.71538 -18.17446 -16.72287 -16.06259 -15.73207 -15.32221 -15.06674 -14.54375 -14.12845 -13.86254 -13.74112 -13.60311 -13.54073 -13.26664 -12.85152 -12.49315 -12.44547 -11.95698 -11.81416 -11.51796 -11.45827 -11.30381 -10.99358 -10.89072 -10.79363 -10.76180 -10.50198 -10.39128 -10.30565 -10.26368 -9.99451 -9.87258 -9.80953 -9.28902 -9.23002 -8.89193 -8.81655 -8.46263 -7.19722 -5.99113 -3.92165 3.28015 3.36287 3.37893 4.40142 4.45368 4.78743 4.97080 5.09479 5.13266 5.14977 5.20045 5.31297 5.44888 5.54611 5.56141 5.59326 5.63628 5.65546 5.76133 5.83207 5.85107 5.93171 5.99334 6.02970 6.12364 6.17597 6.18618 6.22442 6.30537 6.34912 6.38651 6.47974 6.54271 6.56175 6.65943 6.68967 6.72725 6.79509 6.90133 7.00299 7.02518 7.03346 7.26545 7.29013 7.50646 7.74791 8.02283 8.20632 8.75409 9.13675 9.63629 11.13453 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.009417 B = 0.007153 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.782350 B = 3913.327391 C = 6078.443287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.864 3.136 4 H -0.279 1.279 5 H -0.269 1.269 6 H -0.288 1.288 7 C -0.496 4.496 8 H 0.090 0.910 9 C 0.150 3.850 10 N -0.524 5.524 11 C 0.057 3.943 12 C -0.115 4.115 13 C -0.115 4.115 14 C 0.059 3.941 15 N -0.854 5.854 16 C 0.085 3.915 17 C -0.149 4.149 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.116 4.116 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.102 4.102 24 H 0.261 0.739 25 H -0.001 1.001 26 H 0.020 0.980 27 H 0.059 0.941 28 H 0.020 0.980 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.338 0.662 36 H 0.338 0.662 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.050 0.950 48 H 0.053 0.947 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.727 -6.643 -2.497 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.692 3.308 4 H -0.205 1.205 5 H -0.194 1.194 6 H -0.214 1.214 7 C -0.534 4.534 8 H 0.108 0.892 9 C 0.023 3.977 10 N -0.246 5.246 11 C -0.071 4.071 12 C -0.154 4.154 13 C -0.153 4.153 14 C -0.071 4.071 15 N -0.383 5.383 16 C -0.023 4.023 17 C -0.188 4.188 18 C -0.160 4.160 19 C -0.163 4.163 20 C -0.154 4.154 21 C -0.165 4.165 22 C -0.167 4.167 23 C -0.139 4.139 24 H 0.071 0.929 25 H 0.017 0.983 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.228 -7.572 -2.430 14.587 hybrid contribution 0.799 2.699 -0.193 2.821 sum 13.027 -4.874 -2.622 14.154 Atomic orbital electron populations 1.69885 1.05945 1.26463 1.51930 1.24878 0.94619 0.98372 0.95556 0.87039 0.80454 0.84895 0.78426 1.20488 1.19359 1.21419 1.21244 0.88862 0.94772 1.48532 0.89209 1.20375 0.97185 0.84756 0.95342 1.62246 1.16621 1.25206 1.20522 1.21996 0.90930 0.99369 0.94826 1.21573 0.94829 1.02973 0.96003 1.21544 0.97532 1.02010 0.94233 1.21838 0.89084 0.99706 0.96504 1.58774 1.09464 1.60935 1.09128 1.22082 0.97013 0.96900 0.86257 1.22286 1.00400 1.00391 0.95749 1.21804 1.01018 0.95368 0.97830 1.21809 0.97644 0.95136 1.01739 1.21694 0.96734 0.98252 0.98704 1.21838 0.96934 0.98159 0.99599 1.21945 0.98415 0.96385 0.99928 1.21838 0.95123 1.01375 0.95580 0.92906 0.98313 0.96255 0.92277 0.96198 0.91568 0.91123 0.91484 0.92752 0.95517 0.90911 0.85048 0.85003 0.89820 0.91085 0.93277 0.93327 0.90814 0.91045 0.93119 0.92953 0.92234 0.90790 0.93080 0.92867 0.91845 0.91405 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 2 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 3 Si 0.86 21.28 27.58 -169.99 -4.69 16.59 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.27 -6.41 6.39 56.52 0.36 -6.05 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.50 -13.35 7.34 -34.44 -0.25 -13.60 16 8 H 0.09 2.62 6.01 -52.49 -0.32 2.31 16 9 C 0.15 3.47 3.47 -4.97 -0.02 3.45 16 10 N -0.52 -10.40 4.45 -228.07 -1.01 -11.41 16 11 C 0.06 0.96 4.58 -3.83 -0.02 0.94 16 12 C -0.12 -1.80 5.22 -26.73 -0.14 -1.94 16 13 C -0.11 -1.47 5.47 -26.73 -0.15 -1.61 16 14 C 0.06 0.70 6.79 -3.82 -0.03 0.67 16 15 N -0.85 -8.75 9.62 -10.37 -0.10 -8.85 16 16 C 0.09 1.52 1.58 -67.70 -0.11 1.41 16 17 C -0.15 -2.55 3.86 -26.73 -0.10 -2.66 16 18 C -0.12 -1.73 5.48 -26.75 -0.15 -1.87 16 19 C -0.13 -1.58 5.47 -26.74 -0.15 -1.73 16 20 C -0.12 -1.38 5.59 -26.73 -0.15 -1.53 16 21 C -0.13 -1.72 5.47 -26.74 -0.15 -1.87 16 22 C -0.13 -2.01 5.48 -26.74 -0.15 -2.16 16 23 C -0.10 -1.95 3.49 -26.73 -0.09 -2.05 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.00 -0.02 4.39 -51.93 -0.23 -0.25 16 26 H 0.02 0.46 5.61 -51.93 -0.29 0.17 16 27 H 0.06 0.90 7.89 -51.93 -0.41 0.49 16 28 H 0.02 0.34 6.85 -51.93 -0.36 -0.02 16 29 H 0.07 1.15 6.26 -51.93 -0.32 0.83 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.34 3.07 8.99 -39.29 -0.35 2.71 16 36 H 0.34 2.85 9.08 -39.29 -0.36 2.50 16 37 H 0.08 1.36 2.57 -51.93 -0.13 1.23 16 38 H 0.07 1.40 6.66 -51.93 -0.35 1.06 16 39 H 0.05 0.84 6.52 -51.93 -0.34 0.50 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.05 4.69 -51.92 -0.24 0.81 16 42 H 0.07 0.95 5.47 -51.93 -0.28 0.67 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.69 7.47 -51.92 -0.39 0.30 16 46 H 0.07 1.07 5.47 -51.93 -0.28 0.78 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.06 0.96 4.69 -51.93 -0.24 0.71 16 50 H 0.07 1.45 7.13 -51.93 -0.37 1.08 16 51 H 0.09 2.05 6.08 -51.93 -0.32 1.73 16 LS Contribution 352.53 15.07 5.31 5.31 Total: -1.00 -28.59 352.53 -10.44 -39.03 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -8.98 Total: 8.39 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -1.74 Total: -22.77 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.34 Total: -46.55 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.69 Total: 16.59 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.59 -10.44 -39.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235662866.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.995 kcal (2) G-P(sol) polarization free energy of solvation -28.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds