Wall clock time and date at job start Tue Mar 31 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46903 * 2 1 4 4 H 1.08996 * 109.47635 * 303.88523 * 3 2 1 5 5 N 1.46911 * 109.47067 * 63.88126 * 3 2 1 6 6 C 1.52996 * 109.47632 * 183.88020 * 3 2 1 7 7 N 1.46904 * 109.46851 * 61.63054 * 6 3 2 8 8 C 1.46907 * 110.99464 * 76.45729 * 7 6 3 9 9 C 1.50701 * 109.46798 * 281.95403 * 8 7 6 10 10 H 1.08001 * 120.00462 * 359.01933 * 9 8 7 11 11 C 1.37880 * 120.00207 * 179.02564 * 9 8 7 12 12 N 1.31517 * 119.99525 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00283 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46924 * 59.99949 * 13 11 9 15 15 H 1.48494 * 109.46977 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46985 * 299.99884 * 13 11 9 17 17 C 1.46895 * 111.00267 * 200.40350 * 7 6 3 18 18 C 1.53016 * 109.47162 * 68.47243 * 17 7 6 19 19 C 1.52985 * 109.46512 * 164.04494 * 18 17 7 20 20 C 1.52983 * 109.50988 * 315.99094 * 19 18 17 21 21 C 1.53015 * 109.47110 * 112.93107 * 20 19 18 22 22 C 1.53000 * 109.43222 * 284.04786 * 21 20 19 23 23 C 1.52981 * 109.48802 * 75.96030 * 22 21 20 24 24 C 1.53004 * 109.50342 * 247.06427 * 23 22 21 25 25 H 1.08993 * 109.47312 * 299.99584 * 1 2 3 26 26 H 1.08993 * 109.47311 * 59.99912 * 1 2 3 27 27 H 1.09006 * 109.46911 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47311 * 120.00088 * 2 1 3 29 29 H 1.09002 * 109.47472 * 240.00604 * 2 1 3 30 30 H 1.00898 * 110.99365 * 56.04619 * 5 3 2 31 31 H 1.00898 * 111.00086 * 180.02562 * 5 3 2 32 32 H 1.08990 * 109.47734 * 181.63661 * 6 3 2 33 33 H 1.09001 * 109.46991 * 301.63912 * 6 3 2 34 34 H 1.08996 * 109.47517 * 41.95119 * 8 7 6 35 35 H 1.08998 * 109.47180 * 161.95824 * 8 7 6 36 36 H 0.96999 * 120.00016 * 180.02562 * 12 11 9 37 37 H 1.09001 * 109.47272 * 188.47448 * 17 7 6 38 38 H 1.09000 * 109.47326 * 284.04541 * 18 17 7 39 39 H 1.09010 * 109.46695 * 44.04643 * 18 17 7 40 40 H 1.08994 * 109.46663 * 195.97988 * 19 18 17 41 41 H 1.08995 * 109.45541 * 75.99595 * 19 18 17 42 42 H 1.09005 * 109.47383 * 352.93746 * 20 19 18 43 43 H 1.08996 * 109.47746 * 232.93461 * 20 19 18 44 44 H 1.08997 * 109.47685 * 164.05624 * 21 20 19 45 45 H 1.08996 * 109.47827 * 44.03764 * 21 20 19 46 46 H 1.09007 * 109.46771 * 315.95224 * 22 21 20 47 47 H 1.09000 * 109.46190 * 195.96249 * 22 21 20 48 48 H 1.08995 * 109.46816 * 127.05485 * 23 22 21 49 49 H 1.08998 * 109.46917 * 7.07176 * 23 22 21 50 50 H 1.09003 * 109.47098 * 284.01258 * 24 23 22 51 51 H 1.09006 * 109.47233 * 164.00990 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6209 1.9761 -0.8531 5 7 1.6283 2.1074 1.2437 6 6 3.5668 1.4438 -0.0976 7 7 3.9773 0.8138 -1.3596 8 6 3.7764 1.7263 -2.4932 9 6 2.3169 1.7477 -2.8682 10 1 1.6119 1.1319 -2.3297 11 6 1.8817 2.5534 -3.8990 12 7 2.7402 3.3037 -4.5545 13 14 0.0728 2.5794 -4.3643 14 1 -0.7320 3.0231 -3.1978 15 1 -0.1341 3.5203 -5.4944 16 1 -0.3535 1.2161 -4.7702 17 6 5.3722 0.3583 -1.2914 18 6 5.4795 -0.8110 -0.3102 19 6 6.8090 -1.5367 -0.5254 20 6 7.0570 -1.7149 -2.0245 21 6 8.2576 -0.8658 -2.4474 22 6 7.8390 0.6036 -2.5275 23 6 7.7251 1.1796 -1.1149 24 6 6.2614 1.5081 -0.8137 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.9503 1.5952 2.0511 31 1 1.9529 3.0624 1.2677 32 1 3.9320 2.4703 -0.0683 33 1 3.9849 0.8854 0.7400 34 1 4.0940 2.7304 -2.2122 35 1 4.3651 1.3838 -3.3441 36 1 2.4341 3.8708 -5.2794 37 1 5.6973 0.0341 -2.2800 38 1 5.4327 -0.4336 0.7113 39 1 4.6555 -1.5042 -0.4797 40 1 6.7712 -2.5142 -0.0448 41 1 7.6177 -0.9492 -0.0909 42 1 6.1740 -1.3972 -2.5792 43 1 7.2613 -2.7643 -2.2368 44 1 8.6110 -1.1969 -3.4239 45 1 9.0571 -0.9765 -1.7148 46 1 6.8745 0.6797 -3.0298 47 1 8.5863 1.1640 -3.0892 48 1 8.3233 2.0879 -1.0436 49 1 8.0889 0.4477 -0.3937 50 1 5.9805 2.4246 -1.3326 51 1 6.1332 1.6448 0.2602 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235663930.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:16 Heat of formation + Delta-G solvation = -9.952324 kcal Electronic energy + Delta-G solvation = -24983.301659 eV Core-core repulsion = 21916.869073 eV Total energy + Delta-G solvation = -3066.432586 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.69621 -37.11865 -34.64327 -32.77312 -32.57062 -30.99119 -30.51953 -27.35689 -26.78705 -25.67846 -24.38902 -22.86596 -21.66457 -21.12515 -20.35824 -19.63637 -18.27176 -16.64438 -15.73036 -15.47122 -15.15037 -14.46339 -14.13166 -13.99189 -13.91108 -13.78866 -13.54540 -13.20149 -13.04549 -12.51409 -12.49055 -12.33365 -12.04387 -11.51647 -11.31252 -11.25199 -11.05605 -11.00742 -10.93885 -10.84843 -10.69502 -10.52800 -10.50794 -10.41203 -10.17656 -10.07286 -10.00665 -9.65563 -9.48610 -9.22603 -9.08292 -8.36387 -8.08865 -7.15210 -5.99462 -3.98904 3.36502 3.40058 3.43907 4.44215 4.74673 4.89555 5.04048 5.10527 5.25890 5.30777 5.36323 5.38979 5.47324 5.47684 5.53703 5.56010 5.69912 5.83850 5.89711 5.97069 5.99880 6.04220 6.11971 6.13289 6.21248 6.22201 6.24119 6.31300 6.35754 6.37455 6.45611 6.48867 6.56807 6.57555 6.59917 6.68163 6.81792 6.83284 6.89322 7.08363 7.24181 7.32455 7.37861 7.73729 7.88260 8.02756 8.17872 8.27502 8.59853 9.08446 9.63991 11.10509 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.014600 B = 0.006339 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.352323 B = 4415.908772 C = 5452.850453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C 0.075 3.925 4 H 0.125 0.875 5 N -0.844 5.844 6 C 0.042 3.958 7 N -0.523 5.523 8 C 0.195 3.805 9 C -0.505 4.505 10 H 0.076 0.924 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.889 3.111 14 H -0.275 1.275 15 H -0.290 1.290 16 H -0.276 1.276 17 C 0.068 3.932 18 C -0.107 4.107 19 C -0.123 4.123 20 C -0.130 4.130 21 C -0.115 4.115 22 C -0.131 4.131 23 C -0.120 4.120 24 C -0.147 4.147 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.322 0.678 31 H 0.333 0.667 32 H 0.020 0.980 33 H 0.046 0.954 34 H -0.008 1.008 35 H 0.023 0.977 36 H 0.260 0.740 37 H 0.100 0.900 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.079 0.921 47 H 0.054 0.946 48 H 0.050 0.950 49 H 0.068 0.932 50 H 0.063 0.937 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.941 -6.879 8.745 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.036 4.036 4 H 0.142 0.858 5 N -0.371 5.371 6 C -0.089 4.089 7 N -0.246 5.246 8 C 0.070 3.930 9 C -0.544 4.544 10 H 0.094 0.906 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.717 3.283 14 H -0.200 1.200 15 H -0.216 1.216 16 H -0.202 1.202 17 C -0.041 4.041 18 C -0.145 4.145 19 C -0.161 4.161 20 C -0.168 4.168 21 C -0.153 4.153 22 C -0.168 4.168 23 C -0.158 4.158 24 C -0.187 4.187 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.144 0.856 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.010 0.990 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.097 0.903 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.086 0.914 50 H 0.082 0.918 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.866 -7.290 8.250 12.975 hybrid contribution 0.742 1.066 0.007 1.299 sum 7.607 -6.224 8.257 12.837 Atomic orbital electron populations 1.21671 0.96789 0.99592 1.01945 1.21350 0.94941 0.95989 1.01392 1.22087 0.92424 0.95969 0.93109 0.85789 1.59186 1.67358 1.06085 1.04443 1.22761 0.97547 0.95955 0.92601 1.62338 1.17247 1.41552 1.03485 1.19753 0.97279 0.88868 0.87132 1.21354 0.93306 1.23949 1.15775 0.90578 1.24988 0.97475 0.95726 0.96363 1.69952 1.34054 1.27204 1.22600 0.86692 0.85636 0.77892 0.78094 1.20028 1.21552 1.20166 1.22325 0.88437 0.93252 1.00073 1.21641 0.96877 0.97571 0.98419 1.21817 0.98322 0.99689 0.96256 1.21844 0.99174 0.99054 0.96697 1.21678 0.97531 0.95388 1.00680 1.21840 1.02348 0.95344 0.97293 1.21772 0.96886 1.00091 0.97012 1.22321 0.95386 1.00503 1.00454 0.92646 0.93049 0.94531 0.94422 0.89916 0.86657 0.85585 0.96207 0.93563 0.99011 0.95935 0.93040 0.88277 0.93127 0.91328 0.92887 0.91464 0.90175 0.92804 0.92586 0.92411 0.90263 0.92751 0.93158 0.91417 0.91820 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.79 37.16 0.36 -2.05 16 2 C -0.10 -1.73 4.89 -26.73 -0.13 -1.86 16 3 C 0.07 1.37 2.35 -67.71 -0.16 1.21 16 4 H 0.12 2.81 4.92 -51.93 -0.26 2.55 16 5 N -0.84 -13.25 8.66 -4.66 -0.04 -13.29 16 6 C 0.04 0.76 3.39 -3.82 -0.01 0.75 16 7 N -0.52 -10.30 3.60 -228.07 -0.82 -11.12 16 8 C 0.19 4.76 4.16 -4.97 -0.02 4.74 16 9 C -0.51 -13.35 7.27 -34.44 -0.25 -13.60 16 10 H 0.08 1.97 5.05 -52.49 -0.27 1.70 16 11 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 12 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 13 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 C 0.07 1.12 1.56 -67.70 -0.11 1.02 16 18 C -0.11 -1.52 4.64 -26.73 -0.12 -1.65 16 19 C -0.12 -1.48 5.48 -26.75 -0.15 -1.63 16 20 C -0.13 -1.60 5.47 -26.73 -0.15 -1.75 16 21 C -0.12 -1.35 5.59 -26.72 -0.15 -1.50 16 22 C -0.13 -1.76 5.47 -26.74 -0.15 -1.91 16 23 C -0.12 -1.60 5.48 -26.74 -0.15 -1.74 16 24 C -0.15 -2.33 4.01 -26.73 -0.11 -2.43 16 25 H 0.05 0.90 7.72 -51.93 -0.40 0.50 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.61 7.13 -51.93 -0.37 1.24 16 30 H 0.32 4.43 8.98 -39.29 -0.35 4.07 16 31 H 0.33 5.00 9.04 -39.29 -0.36 4.65 16 32 H 0.02 0.39 7.31 -51.93 -0.38 0.01 16 33 H 0.05 0.76 6.23 -51.93 -0.32 0.44 16 34 H -0.01 -0.21 6.93 -51.93 -0.36 -0.57 16 35 H 0.02 0.60 7.65 -51.93 -0.40 0.20 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.10 1.74 2.44 -51.93 -0.13 1.62 16 38 H 0.05 0.71 6.70 -51.93 -0.35 0.36 16 39 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.78 4.69 -51.93 -0.24 0.54 16 42 H 0.08 1.15 5.47 -51.93 -0.28 0.87 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.62 7.47 -51.93 -0.39 0.23 16 46 H 0.08 1.27 5.47 -51.93 -0.28 0.98 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.82 4.69 -51.93 -0.24 0.58 16 50 H 0.06 1.18 6.82 -51.93 -0.35 0.83 16 51 H 0.05 0.79 7.28 -51.93 -0.38 0.42 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -27.07 354.99 -10.22 -37.29 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -9.05 Total: 11.66 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -1.38 Total: -20.96 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.12 Total: -49.78 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.07 -10.22 -37.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235663930.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.341 kcal (2) G-P(sol) polarization free energy of solvation -27.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds