Wall clock time and date at job start Tue Mar 31 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47199 * 2 1 4 4 N 1.46896 * 109.46977 * 179.44803 * 3 2 1 5 5 C 1.46894 * 111.00252 * 297.52058 * 4 3 2 6 6 C 1.50703 * 109.47142 * 292.82471 * 5 4 3 7 7 H 1.08009 * 119.99841 * 354.98542 * 6 5 4 8 8 C 1.37873 * 120.00255 * 174.98912 * 6 5 4 9 9 N 1.31514 * 120.00072 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00243 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46706 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47009 * 119.99820 * 10 8 6 13 13 H 1.48490 * 109.47049 * 239.99979 * 10 8 6 14 14 C 1.46903 * 110.99975 * 61.47385 * 4 3 2 15 15 C 1.53007 * 109.46990 * 66.04326 * 14 4 3 16 16 C 1.52999 * 109.46822 * 180.02562 * 15 14 4 17 17 N 1.46899 * 109.46771 * 180.02562 * 16 15 14 18 18 C 1.46904 * 110.99927 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47238 * 275.00086 * 18 17 16 20 20 C 1.53004 * 109.47015 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.47145 * 59.99855 * 20 19 18 22 22 C 1.52998 * 109.46928 * 300.00026 * 21 20 19 23 23 C 1.53000 * 109.47406 * 60.00329 * 22 21 20 24 24 H 1.08997 * 109.47177 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47048 * 300.00364 * 1 2 3 26 26 H 1.09004 * 109.47204 * 59.99908 * 1 2 3 27 27 H 1.09000 * 109.46452 * 240.00034 * 2 1 3 28 28 H 1.08997 * 109.46378 * 120.00270 * 2 1 3 29 29 H 1.08998 * 109.46974 * 59.44670 * 3 2 1 30 30 H 1.08998 * 109.46963 * 299.45171 * 3 2 1 31 31 H 1.09006 * 109.47309 * 52.81995 * 5 4 3 32 32 H 1.09000 * 109.47134 * 172.82333 * 5 4 3 33 33 H 0.96995 * 120.00727 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47246 * 306.04567 * 14 4 3 35 35 H 1.08996 * 109.47316 * 186.04253 * 14 4 3 36 36 H 1.09002 * 109.46929 * 60.00047 * 15 14 4 37 37 H 1.08996 * 109.47032 * 300.00102 * 15 14 4 38 38 H 1.08992 * 109.47438 * 60.00290 * 16 15 14 39 39 H 1.09002 * 109.47048 * 300.00149 * 16 15 14 40 40 H 1.00904 * 111.00185 * 303.95018 * 17 16 15 41 41 H 1.09002 * 109.46787 * 34.99866 * 18 17 16 42 42 H 1.09005 * 109.46630 * 299.99883 * 19 18 17 43 43 H 1.08995 * 109.47254 * 59.99379 * 19 18 17 44 44 H 1.08993 * 109.46957 * 299.99468 * 20 19 18 45 45 H 1.09000 * 109.46950 * 179.97438 * 20 19 18 46 46 H 1.08999 * 109.46562 * 179.97438 * 21 20 19 47 47 H 1.08999 * 109.46862 * 60.00097 * 21 20 19 48 48 H 1.08999 * 109.47407 * 299.99737 * 22 21 20 49 49 H 1.09005 * 109.46881 * 180.02562 * 22 21 20 50 50 H 1.09000 * 109.47127 * 179.97438 * 23 22 21 51 51 H 1.08993 * 109.47117 * 60.00023 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4424 0.0133 5 6 4.0244 0.8127 1.2363 6 6 3.6791 1.6699 2.4267 7 1 3.2035 2.6288 2.2818 8 6 3.9702 1.2303 3.7005 9 7 4.5489 0.0625 3.8770 10 14 3.5428 2.2932 5.1761 11 1 2.9027 3.5501 4.7117 12 1 2.6040 1.5576 6.0607 13 1 4.7815 2.6166 5.9285 14 6 4.0463 0.7836 -1.1847 15 6 3.6935 1.6103 -2.4229 16 6 4.2526 0.9237 -3.6707 17 7 3.9144 1.7178 -4.8594 18 6 4.4368 1.0879 -6.0794 19 6 5.8914 1.5130 -6.2901 20 6 6.4354 0.8574 -7.5611 21 6 5.5960 1.2986 -8.7618 22 6 4.1415 0.8734 -8.5510 23 6 3.5975 1.5290 -7.2801 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6687 1.9591 0.8850 30 1 1.6848 1.9534 -0.8948 31 1 3.5737 -0.1727 1.3553 32 1 5.1071 0.7106 1.1638 33 1 4.7534 -0.2470 4.7731 34 1 3.6128 -0.2122 -1.2771 35 1 5.1298 0.7017 -1.0992 36 1 4.1270 2.6061 -2.3305 37 1 2.6100 1.6922 -2.5084 38 1 3.8187 -0.0718 -3.7629 39 1 5.3361 0.8414 -3.5854 40 1 2.9181 1.8634 -4.9256 41 1 4.3861 0.0037 -5.9788 42 1 5.9421 2.5972 -6.3906 43 1 6.4893 1.1992 -5.4344 44 1 6.3846 -0.2267 -7.4609 45 1 7.4715 1.1607 -7.7114 46 1 5.9839 0.8319 -9.6672 47 1 5.6468 2.3828 -8.8619 48 1 4.0907 -0.2108 -8.4509 49 1 3.5436 1.1873 -9.4067 50 1 2.5611 1.2265 -7.1303 51 1 3.6482 2.6131 -7.3803 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235719577.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:03 Heat of formation + Delta-G solvation = -35.313118 kcal Electronic energy + Delta-G solvation = -22694.904146 eV Core-core repulsion = 19627.371833 eV Total energy + Delta-G solvation = -3067.532312 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.09464 -37.72899 -35.46504 -32.78752 -32.52137 -31.10444 -30.89834 -28.50758 -26.71580 -25.35138 -23.56516 -22.81398 -22.09085 -21.63281 -21.01143 -19.87909 -18.91448 -16.20689 -16.08461 -15.66178 -15.33640 -15.02938 -14.58336 -14.49058 -14.43762 -14.16019 -13.72543 -13.49027 -13.14125 -12.93814 -12.46986 -12.41185 -12.29689 -12.05088 -11.57576 -11.47159 -11.36763 -11.29622 -11.26276 -11.00764 -10.87370 -10.82373 -10.76131 -10.60753 -10.42636 -10.39264 -10.31091 -10.24482 -9.88536 -9.53259 -9.12178 -8.45654 -8.39483 -7.07847 -5.98906 -3.99432 3.32840 3.40346 3.45531 3.97247 4.45605 4.47193 4.50564 4.75556 4.96208 4.99683 5.08393 5.19775 5.25469 5.28515 5.29088 5.36417 5.37243 5.50491 5.53284 5.56039 5.57793 5.69704 5.74669 5.80822 5.85376 5.88874 5.92656 5.95031 6.00526 6.01383 6.11002 6.12471 6.15082 6.23825 6.34671 6.42947 6.52439 6.60574 6.65920 6.81087 6.98812 7.06472 7.35338 7.38000 7.48617 7.86928 8.16642 8.27212 8.62597 9.09373 9.64628 11.11818 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.026709 B = 0.002753 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.096705 B =10166.788467 C =10776.230923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.163 4.163 3 C 0.066 3.934 4 N -0.535 5.535 5 C 0.188 3.812 6 C -0.501 4.501 7 H 0.063 0.937 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.054 3.946 15 C -0.110 4.110 16 C 0.062 3.938 17 N -0.687 5.687 18 C 0.088 3.912 19 C -0.107 4.107 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.121 4.121 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.002 0.998 32 H 0.023 0.977 33 H 0.259 0.741 34 H 0.024 0.976 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.024 0.976 39 H 0.070 0.930 40 H 0.339 0.661 41 H 0.040 0.960 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.059 0.941 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.032 0.043 -23.040 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C -0.062 4.062 4 N -0.258 5.258 5 C 0.063 3.937 6 C -0.540 4.540 7 H 0.081 0.919 8 C -0.147 4.147 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.076 4.076 15 C -0.149 4.149 16 C -0.068 4.068 17 N -0.318 5.318 18 C -0.022 4.022 19 C -0.146 4.146 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.159 4.159 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.020 0.980 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.089 0.911 40 H 0.157 0.843 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.077 0.923 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.250 0.853 -22.811 22.861 hybrid contribution -1.030 -1.255 0.874 1.843 sum -2.280 -0.402 -21.937 22.059 Atomic orbital electron populations 1.21654 0.96581 1.00591 1.01188 1.22168 0.95439 1.00629 1.02009 1.22049 0.88729 0.94238 1.01203 1.62307 1.06227 1.54668 1.02587 1.19785 0.95019 0.93497 0.85426 1.21202 1.38729 1.04000 0.90070 0.91906 1.24982 0.95524 0.95163 0.99019 1.69966 1.42837 1.19250 1.21971 0.86485 0.78030 0.80563 0.82627 1.19656 1.21202 1.21073 1.22004 0.99711 0.94980 0.90860 1.21549 1.00451 1.00524 0.92350 1.21997 1.00939 0.94029 0.89822 1.60483 1.19245 1.50320 1.01719 1.21515 0.95216 0.96198 0.89261 1.21525 0.94929 1.01155 0.96943 1.21551 0.99048 1.00407 0.94840 1.21544 0.95110 1.01215 0.97863 1.21496 0.96235 1.00416 0.97335 1.21712 0.98459 1.01465 0.94241 0.93722 0.92696 0.93596 0.93161 0.90720 0.90295 0.92944 0.98035 0.95880 0.93089 0.95781 0.91761 0.90579 0.92465 0.95758 0.91118 0.84299 0.94177 0.91289 0.92006 0.92254 0.91915 0.92245 0.91892 0.92152 0.91965 0.92256 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.91 37.16 0.37 -1.77 16 2 C -0.16 -2.95 5.28 -26.73 -0.14 -3.09 16 3 C 0.07 1.29 4.95 -3.83 -0.02 1.27 16 4 N -0.54 -11.54 4.69 -236.07 -1.11 -12.65 16 5 C 0.19 4.89 4.54 -4.98 -0.02 4.87 16 6 C -0.50 -14.13 8.39 -34.44 -0.29 -14.42 16 7 H 0.06 1.77 7.39 -52.48 -0.39 1.38 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 10 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.05 0.96 4.74 -3.82 -0.02 0.95 16 15 C -0.11 -1.63 5.40 -26.73 -0.14 -1.77 16 16 C 0.06 0.77 5.48 -3.83 -0.02 0.75 16 17 N -0.69 -7.68 6.31 -106.72 -0.67 -8.35 16 18 C 0.09 0.86 2.50 -67.71 -0.17 0.69 16 19 C -0.11 -1.03 5.43 -26.73 -0.15 -1.18 16 20 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 21 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 22 C -0.12 -0.84 5.92 -26.73 -0.16 -0.99 16 23 C -0.12 -0.99 5.19 -26.73 -0.14 -1.13 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.86 6.34 -51.93 -0.33 0.53 16 28 H 0.07 1.59 6.28 -51.93 -0.33 1.27 16 29 H 0.08 1.69 6.98 -51.93 -0.36 1.32 16 30 H 0.05 0.90 6.40 -51.93 -0.33 0.57 16 31 H 0.00 0.05 6.02 -51.93 -0.31 -0.26 16 32 H 0.02 0.65 7.91 -51.93 -0.41 0.24 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 34 H 0.02 0.43 6.06 -51.93 -0.31 0.12 16 35 H 0.06 1.19 7.92 -51.93 -0.41 0.78 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 0.82 6.52 -51.93 -0.34 0.49 16 38 H 0.02 0.30 8.06 -51.93 -0.42 -0.11 16 39 H 0.07 0.92 7.43 -51.93 -0.39 0.53 16 40 H 0.34 3.51 8.35 -39.29 -0.33 3.19 16 41 H 0.04 0.42 7.80 -51.93 -0.41 0.01 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 51 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 381.21 15.07 5.74 5.74 Total: -1.00 -29.03 381.21 -11.71 -40.74 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -10.08 Total: 0.36 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -1.31 Total: -16.51 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -1.04 Total: -47.14 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.03 -11.71 -40.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235719577.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.431 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds