Wall clock time and date at job start Tue Mar 31 2020 05:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47137 * 2 1 4 4 H 1.09004 * 109.46982 * 304.24602 * 3 2 1 5 5 C 1.50699 * 109.47204 * 184.24771 * 3 2 1 6 6 H 1.08003 * 120.00128 * 240.00136 * 5 3 2 7 7 C 1.37878 * 120.00231 * 60.00013 * 5 3 2 8 8 N 1.31517 * 119.99410 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00082 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.46953 * 119.99882 * 9 7 5 12 12 H 1.48498 * 109.47039 * 239.99489 * 9 7 5 13 13 N 1.46904 * 109.47416 * 64.24559 * 3 2 1 14 14 C 1.46893 * 111.00118 * 205.87050 * 13 3 2 15 15 C 1.53005 * 109.46819 * 174.81766 * 14 13 3 16 16 C 1.53004 * 109.46850 * 180.02562 * 15 14 13 17 17 N 1.46904 * 109.47118 * 180.02562 * 16 15 14 18 18 C 1.46827 * 110.98339 * 294.21659 * 17 16 15 19 19 C 1.53038 * 109.51548 * 174.15683 * 18 17 16 20 20 H 1.08993 * 109.50314 * 299.23240 * 19 18 17 21 21 C 1.53005 * 109.49964 * 179.11912 * 19 18 17 22 22 C 1.53111 * 109.28011 * 59.17608 * 19 18 17 23 23 C 1.53117 * 109.16106 * 302.34556 * 22 19 18 24 24 H 1.09001 * 109.50182 * 297.71058 * 23 22 19 25 25 C 1.53000 * 109.50296 * 177.59745 * 23 22 19 26 26 C 1.46848 * 111.00195 * 169.99923 * 17 16 15 27 27 H 1.08995 * 109.47398 * 54.90196 * 1 2 3 28 28 H 1.09009 * 109.47054 * 174.90076 * 1 2 3 29 29 H 1.09000 * 109.46851 * 294.89610 * 1 2 3 30 30 H 1.08997 * 109.46917 * 239.99827 * 2 1 3 31 31 H 1.09004 * 109.47095 * 120.00167 * 2 1 3 32 32 H 0.97000 * 119.99145 * 180.02562 * 8 7 5 33 33 H 1.00897 * 110.99740 * 81.91340 * 13 3 2 34 34 H 1.08995 * 109.47211 * 54.82280 * 14 13 3 35 35 H 1.09001 * 109.47501 * 294.81707 * 14 13 3 36 36 H 1.08997 * 109.47241 * 60.00569 * 15 14 13 37 37 H 1.08991 * 109.47394 * 299.99832 * 15 14 13 38 38 H 1.08996 * 109.47574 * 59.99931 * 16 15 14 39 39 H 1.09001 * 109.47352 * 299.99869 * 16 15 14 40 40 H 1.08997 * 109.46910 * 54.13540 * 18 17 16 41 41 H 1.09007 * 109.45078 * 294.15895 * 18 17 16 42 42 H 1.09008 * 109.46896 * 300.19228 * 21 19 18 43 43 H 1.08996 * 109.47175 * 60.19245 * 21 19 18 44 44 H 1.09002 * 109.46802 * 180.20138 * 21 19 18 45 45 H 1.09005 * 109.52612 * 182.43910 * 22 19 18 46 46 H 1.09003 * 109.57807 * 62.27920 * 22 19 18 47 47 H 1.09002 * 109.47260 * 300.19453 * 25 23 22 48 48 H 1.09006 * 109.47373 * 60.19914 * 25 23 22 49 49 H 1.09009 * 109.47153 * 180.19186 * 25 23 22 50 50 H 1.08998 * 109.46126 * 65.82013 * 26 17 16 51 51 H 1.08999 * 109.45992 * 305.84270 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6158 1.9777 -0.8495 5 6 3.5433 1.4437 -0.1052 6 1 4.1390 1.8917 0.6764 7 6 4.1584 0.8730 -1.1993 8 7 3.4330 0.3271 -2.1509 9 14 6.0218 0.8741 -1.3294 10 1 6.6009 1.5445 -0.1376 11 1 6.5139 -0.5254 -1.3987 12 1 6.4320 1.6043 -2.5557 13 7 1.6359 2.1048 1.2474 14 6 1.5392 3.5590 1.0639 15 6 0.9934 4.1991 2.3420 16 6 0.8922 5.7137 2.1507 17 7 0.3687 6.3284 3.3780 18 6 -1.0161 5.9087 3.6268 19 6 -1.4782 6.4486 4.9823 20 1 -0.8420 6.0459 5.7703 21 6 -2.9285 6.0296 5.2314 22 6 -1.3810 7.9766 4.9776 23 6 0.0611 8.3876 4.6682 24 1 0.7216 8.0154 5.4514 25 6 0.1545 9.9133 4.6024 26 6 0.4785 7.7917 3.3219 27 1 -0.3634 0.5908 -0.8408 28 1 -0.3634 -1.0237 -0.0913 29 1 -0.3633 0.4326 0.9322 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8657 -0.0747 -2.9204 33 1 2.2686 1.8764 1.9994 34 1 0.8678 3.7766 0.2334 35 1 2.5277 3.9645 0.8480 36 1 1.6648 3.9816 3.1726 37 1 0.0050 3.7937 2.5579 38 1 0.2206 5.9310 1.3201 39 1 1.8805 6.1195 1.9345 40 1 -1.0705 4.8201 3.6317 41 1 -1.6612 6.3011 2.8406 42 1 -3.5635 6.4314 4.4417 43 1 -2.9970 4.9418 5.2346 44 1 -3.2582 6.4173 6.1953 45 1 -1.6680 8.3629 5.9557 46 1 -2.0468 8.3826 4.2160 47 1 -0.5076 10.2845 3.8201 48 1 -0.1428 10.3373 5.5616 49 1 1.1807 10.2052 4.3787 50 1 -0.1736 8.1750 2.5371 51 1 1.5098 8.0704 3.1054 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:46 Heat of formation + Delta-G solvation = -36.034841 kcal Electronic energy + Delta-G solvation = -22892.109254 eV Core-core repulsion = 19824.545646 eV Total energy + Delta-G solvation = -3067.563609 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.55336 -36.53775 -35.11423 -33.65365 -32.85289 -31.42454 -29.62582 -26.94925 -26.74252 -26.42816 -24.71638 -22.81341 -21.65100 -21.15502 -20.33807 -19.81928 -19.30066 -16.69060 -15.86982 -15.59723 -15.07807 -14.81380 -14.74290 -14.52204 -14.02488 -13.71321 -13.38724 -12.97938 -12.91536 -12.74028 -12.66248 -12.45775 -12.23867 -12.01145 -11.89126 -11.78840 -11.35035 -11.22622 -11.01573 -10.95886 -10.88287 -10.76632 -10.72938 -10.65216 -10.40889 -10.33455 -10.22455 -9.95425 -9.56401 -9.40087 -9.01384 -8.36638 -8.29420 -7.19875 -5.97891 -4.10761 3.26678 3.35183 3.38756 3.82576 4.40827 4.48698 4.63470 4.67608 4.83216 5.14230 5.19400 5.23026 5.26708 5.32024 5.38317 5.38801 5.41966 5.49609 5.55323 5.63353 5.65907 5.70497 5.75300 5.82513 5.88220 5.90619 5.97106 6.00053 6.06841 6.13035 6.26955 6.31044 6.36392 6.42762 6.53125 6.68443 6.74217 6.78730 7.13213 7.14583 7.17473 7.20205 7.47969 7.62901 7.80103 8.12463 8.19014 8.37407 8.71159 9.03146 9.56850 11.02102 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.021826 B = 0.003096 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.593613 B = 9042.446464 C =10057.074414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.690 5.690 14 C 0.069 3.931 15 C -0.110 4.110 16 C 0.058 3.942 17 N -0.539 5.539 18 C 0.057 3.943 19 C -0.090 4.090 20 H 0.078 0.922 21 C -0.146 4.146 22 C -0.110 4.110 23 C -0.090 4.090 24 H 0.078 0.922 25 C -0.146 4.146 26 C 0.061 3.939 27 H 0.035 0.965 28 H 0.024 0.976 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.030 0.970 32 H 0.260 0.740 33 H 0.327 0.673 34 H 0.056 0.944 35 H 0.025 0.975 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.029 0.971 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.029 0.971 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.821 14.952 12.697 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.319 5.319 14 C -0.062 4.062 15 C -0.148 4.148 16 C -0.070 4.070 17 N -0.262 5.262 18 C -0.070 4.070 19 C -0.109 4.109 20 H 0.096 0.904 21 C -0.204 4.204 22 C -0.147 4.147 23 C -0.109 4.109 24 H 0.096 0.904 25 C -0.204 4.204 26 C -0.068 4.068 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.143 0.857 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.048 0.952 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.197 14.585 12.779 21.909 hybrid contribution 1.578 0.511 -1.011 1.942 sum -8.620 15.096 11.768 20.993 Atomic orbital electron populations 1.21684 0.99041 0.98207 1.00330 1.21495 0.92054 0.99296 1.01625 1.19145 0.92660 0.91148 0.86393 0.95191 1.21924 0.92793 1.37773 1.05774 0.92824 1.24945 0.97974 0.95035 0.95675 1.69897 1.34759 1.38174 1.09583 0.86602 0.86115 0.77736 0.77914 1.19906 1.20950 1.21076 1.60865 1.55210 1.06096 1.09710 1.21688 0.98603 0.90194 0.95709 1.21574 1.01877 0.92445 0.98886 1.22098 0.99548 0.95879 0.89464 1.61884 1.20193 1.07365 1.36796 1.22200 0.88030 1.00981 0.95826 1.21167 0.96513 0.95299 0.97913 0.90377 1.21793 0.95755 1.01540 1.01318 1.21704 0.96210 0.95493 1.01307 1.21165 0.97047 0.94843 0.97841 0.90369 1.21796 1.01751 0.95186 1.01640 1.22121 1.00827 0.87601 0.96204 0.94543 0.95712 0.93487 0.89246 0.95109 0.92978 0.85725 0.92570 0.95630 0.91757 0.91768 0.95062 0.90946 0.90022 0.95260 0.92908 0.92361 0.92652 0.92045 0.92419 0.92892 0.92584 0.92573 0.95235 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.73 37.16 0.36 -2.47 16 2 C -0.11 -2.58 5.45 -26.73 -0.15 -2.73 16 3 C 0.21 5.36 1.98 -68.87 -0.14 5.23 16 4 H 0.03 0.83 7.70 -51.93 -0.40 0.43 16 5 C -0.54 -14.78 8.47 -34.44 -0.29 -15.07 16 6 H 0.05 1.46 7.73 -52.48 -0.41 1.05 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.89 -25.22 11.29 55.43 0.63 -24.59 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.69 -14.61 5.73 -107.96 -0.62 -15.23 16 14 C 0.07 1.29 5.51 -3.83 -0.02 1.27 16 15 C -0.11 -1.66 5.45 -26.73 -0.15 -1.81 16 16 C 0.06 0.78 4.96 -3.82 -0.02 0.76 16 17 N -0.54 -6.56 4.66 -234.69 -1.09 -7.66 16 18 C 0.06 0.65 4.57 -3.84 -0.02 0.63 16 19 C -0.09 -0.85 2.88 -90.54 -0.26 -1.12 16 20 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 21 C -0.15 -1.20 9.20 37.16 0.34 -0.86 16 22 C -0.11 -0.94 4.57 -26.61 -0.12 -1.07 16 23 C -0.09 -0.81 2.88 -90.54 -0.26 -1.07 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 25 C -0.15 -1.08 9.20 37.16 0.34 -0.74 16 26 C 0.06 0.64 4.74 -3.84 -0.02 0.62 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.05 0.94 7.88 -51.93 -0.41 0.53 16 30 H 0.09 2.42 5.97 -51.93 -0.31 2.11 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.33 6.89 8.45 -39.29 -0.33 6.56 16 34 H 0.06 1.08 7.92 -51.93 -0.41 0.67 16 35 H 0.03 0.51 8.11 -51.93 -0.42 0.09 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.98 6.43 -51.93 -0.33 0.65 16 38 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 39 H 0.07 0.97 7.99 -51.93 -0.41 0.56 16 40 H 0.08 0.99 6.21 -51.93 -0.32 0.66 16 41 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 50 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 51 H 0.07 0.76 8.01 -51.93 -0.42 0.34 16 LS Contribution 386.55 15.07 5.83 5.83 Total: -1.00 -27.44 386.55 -11.27 -38.71 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -10.50 Total: 3.40 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -0.49 Total: -16.70 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -1.09 Total: -47.48 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -27.44 -11.27 -38.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.673 kcal (2) G-P(sol) polarization free energy of solvation -27.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds