Wall clock time and date at job start Tue Mar 31 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 H 1.09002 * 109.47124 * 174.09696 * 3 2 1 5 5 C 1.50697 * 109.47217 * 54.09312 * 3 2 1 6 6 H 1.07999 * 120.00280 * 239.99970 * 5 3 2 7 7 C 1.37878 * 119.99673 * 59.99682 * 5 3 2 8 8 N 1.31513 * 120.00520 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99951 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47152 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46968 * 120.00020 * 9 7 5 12 12 H 1.48499 * 109.47164 * 240.00112 * 9 7 5 13 13 N 1.46899 * 109.47185 * 294.09261 * 3 2 1 14 14 C 1.46903 * 111.00362 * 275.79814 * 13 3 2 15 15 C 1.52992 * 109.47204 * 176.17455 * 14 13 3 16 16 C 1.53000 * 109.46927 * 180.02562 * 15 14 13 17 17 N 1.46899 * 109.47044 * 180.02562 * 16 15 14 18 18 C 1.46848 * 110.99953 * 170.00337 * 17 16 15 19 19 C 1.53045 * 109.52373 * 174.16409 * 18 17 16 20 20 H 1.08995 * 109.50078 * 299.23490 * 19 18 17 21 21 C 1.52999 * 109.50050 * 179.12175 * 19 18 17 22 22 C 1.53117 * 109.27795 * 59.17750 * 19 18 17 23 23 C 1.53115 * 109.16160 * 302.34535 * 22 19 18 24 24 H 1.09002 * 109.53670 * 177.61719 * 23 22 19 25 25 C 1.52997 * 109.50405 * 297.71671 * 23 22 19 26 26 C 1.46845 * 111.00105 * 45.79646 * 17 16 15 27 27 H 1.09002 * 109.47328 * 178.55463 * 1 2 3 28 28 H 1.09001 * 109.46496 * 298.55100 * 1 2 3 29 29 H 1.09000 * 109.47232 * 58.54974 * 1 2 3 30 30 H 1.09003 * 109.46538 * 240.00142 * 2 1 3 31 31 H 1.09000 * 109.47457 * 120.00589 * 2 1 3 32 32 H 0.96993 * 120.00522 * 179.97438 * 8 7 5 33 33 H 1.00901 * 110.99950 * 39.75852 * 13 3 2 34 34 H 1.09005 * 109.46698 * 56.17567 * 14 13 3 35 35 H 1.08996 * 109.47263 * 296.18133 * 14 13 3 36 36 H 1.09005 * 109.47201 * 60.00420 * 15 14 13 37 37 H 1.08996 * 109.47565 * 300.00493 * 15 14 13 38 38 H 1.09002 * 109.46990 * 60.00701 * 16 15 14 39 39 H 1.08996 * 109.47385 * 300.00584 * 16 15 14 40 40 H 1.08994 * 109.46598 * 54.14368 * 18 17 16 41 41 H 1.09005 * 109.46214 * 294.17369 * 18 17 16 42 42 H 1.09001 * 109.47427 * 59.99818 * 21 19 18 43 43 H 1.09001 * 109.46933 * 179.97438 * 21 19 18 44 44 H 1.08999 * 109.47073 * 299.99404 * 21 19 18 45 45 H 1.08993 * 109.52244 * 62.25445 * 22 19 18 46 46 H 1.09002 * 109.51753 * 182.44345 * 22 19 18 47 47 H 1.09009 * 109.47266 * 179.80251 * 25 23 22 48 48 H 1.09007 * 109.47250 * 299.80033 * 25 23 22 49 49 H 1.09000 * 109.47511 * 59.80244 * 25 23 22 50 50 H 1.09008 * 109.45721 * 305.85221 * 26 17 16 51 51 H 1.08998 * 109.46409 * 65.81784 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1057 5 6 1.4219 2.1939 1.1508 6 1 0.8150 3.0670 0.9619 7 6 1.6311 1.7665 2.4449 8 7 2.3705 0.7035 2.6750 9 14 0.8643 2.6974 3.8714 10 1 0.0835 3.8477 3.3493 11 1 -0.0365 1.7905 4.6271 12 1 1.9359 3.1938 4.7717 13 7 1.6702 2.0926 -1.2643 14 6 2.6507 1.7936 -2.3166 15 6 2.1834 2.4067 -3.6381 16 6 3.2043 2.0947 -4.7342 17 7 2.7560 2.6840 -6.0030 18 6 3.8136 2.6122 -7.0193 19 6 3.2659 3.0997 -8.3626 20 1 2.4381 2.4615 -8.6713 21 6 4.3742 3.0454 -9.4160 22 6 2.7720 4.5414 -8.2140 23 6 1.7061 4.5968 -7.1162 24 1 1.3805 5.6276 -6.9759 25 6 0.5096 3.7339 -7.5220 26 6 2.2990 4.0659 -5.8090 27 1 -0.3634 -1.0273 -0.0259 28 1 -0.3632 0.4912 0.9027 29 1 -0.3634 0.5362 -0.8767 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.5179 0.4031 3.5854 33 1 0.7402 1.8251 -1.5500 34 1 2.7438 0.7135 -2.4300 35 1 3.6178 2.2148 -2.0424 36 1 2.0903 3.4869 -3.5247 37 1 1.2163 1.9855 -3.9123 38 1 3.2970 1.0146 -4.8476 39 1 4.1717 2.5156 -4.4603 40 1 4.1530 1.5812 -7.1181 41 1 4.6502 3.2425 -6.7179 42 1 4.7278 2.0195 -9.5189 43 1 3.9835 3.3923 -10.3727 44 1 5.2007 3.6854 -9.1072 45 1 3.6077 5.1866 -7.9432 46 1 2.3414 4.8780 -9.1571 47 1 -0.2475 3.7709 -6.7385 48 1 0.0877 4.1125 -8.4530 49 1 0.8359 2.7036 -7.6634 50 1 1.5382 4.0906 -5.0287 51 1 3.1427 4.6894 -5.5133 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152777.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:49 Heat of formation + Delta-G solvation = -24.844667 kcal Electronic energy + Delta-G solvation = -23116.643095 eV Core-core repulsion = 20049.564728 eV Total energy + Delta-G solvation = -3067.078366 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.77574 -36.85408 -35.27684 -33.27363 -32.90006 -31.19342 -29.31570 -26.95967 -26.78993 -26.38826 -24.76937 -23.21546 -22.18979 -21.99603 -20.21389 -19.22452 -18.83760 -16.30668 -15.93980 -15.44405 -15.30844 -14.80509 -14.57597 -14.55423 -14.15074 -13.94066 -13.48842 -13.27062 -13.02108 -12.82583 -12.44143 -12.29408 -12.25237 -12.10482 -11.77290 -11.70793 -11.60562 -11.30593 -11.07170 -10.96957 -10.87775 -10.74312 -10.59424 -10.48004 -10.44667 -10.25614 -10.17183 -9.87682 -9.70331 -9.49625 -8.92157 -8.31992 -8.28326 -7.15056 -5.94652 -3.95895 3.33007 3.41131 3.46279 3.82914 4.46707 4.50497 4.61399 4.68959 4.90118 5.07821 5.11445 5.24643 5.26271 5.33341 5.37129 5.41294 5.46625 5.54110 5.57390 5.63493 5.65300 5.68279 5.78301 5.82924 5.87440 5.87964 5.92945 6.02919 6.08585 6.13963 6.16221 6.24892 6.38667 6.40063 6.41104 6.55630 6.57769 6.64204 6.94182 7.08539 7.11150 7.32369 7.34307 7.54272 7.74007 7.93077 8.33005 8.60466 8.68326 9.10366 9.67801 11.12602 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.030794 B = 0.002845 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.044807 B = 9840.626020 C =10046.938821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.685 5.685 14 C 0.062 3.938 15 C -0.119 4.119 16 C 0.058 3.942 17 N -0.535 5.535 18 C 0.061 3.939 19 C -0.091 4.091 20 H 0.081 0.919 21 C -0.147 4.147 22 C -0.111 4.111 23 C -0.090 4.090 24 H 0.070 0.930 25 C -0.139 4.139 26 C 0.052 3.948 27 H 0.021 0.979 28 H 0.065 0.935 29 H 0.030 0.970 30 H 0.010 0.990 31 H 0.091 0.909 32 H 0.258 0.742 33 H 0.325 0.675 34 H 0.018 0.982 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.030 0.970 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.051 0.949 48 H 0.043 0.957 49 H 0.069 0.931 50 H 0.087 0.913 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.343 4.046 -22.022 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.316 5.316 14 C -0.069 4.069 15 C -0.157 4.157 16 C -0.070 4.070 17 N -0.259 5.259 18 C -0.067 4.067 19 C -0.109 4.109 20 H 0.099 0.901 21 C -0.204 4.204 22 C -0.148 4.148 23 C -0.109 4.109 24 H 0.088 0.912 25 C -0.196 4.196 26 C -0.076 4.076 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.029 0.971 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.143 0.857 34 H 0.036 0.964 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.088 0.912 50 H 0.105 0.895 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.311 4.278 -21.857 22.310 hybrid contribution 0.226 -0.105 0.996 1.026 sum 1.537 4.172 -20.861 21.330 Atomic orbital electron populations 1.21560 0.97684 0.97949 1.01241 1.22093 0.95034 1.01199 1.00115 1.19190 0.95958 0.88630 0.85537 0.95101 1.21119 1.30250 1.11415 0.89782 0.92032 1.24920 0.95627 0.95195 0.98714 1.69894 1.39404 1.24239 1.20150 0.86531 0.79019 0.79923 0.82493 1.19758 1.21247 1.21229 1.60856 1.03981 1.63197 1.03587 1.21832 0.97205 0.96861 0.91008 1.21734 0.98607 1.01799 0.93520 1.22101 0.96880 0.99703 0.88284 1.61951 1.36837 1.18813 1.08284 1.22124 0.92236 1.00682 0.91706 1.21200 0.98361 0.96997 0.94381 0.90095 1.21803 0.98424 1.01708 0.98502 1.21677 0.98220 0.96306 0.98628 1.21180 0.95866 0.99195 0.94650 0.91182 1.21748 0.96776 1.00951 1.00116 1.22268 0.99477 0.88240 0.97624 0.95950 0.91580 0.95144 0.97101 0.89062 0.93228 0.85650 0.96412 0.92184 0.91117 0.91688 0.90881 0.94980 0.91028 0.95168 0.92637 0.92597 0.92898 0.92458 0.92032 0.92944 0.93779 0.91229 0.89485 0.95169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.39 37.16 0.35 -2.40 16 2 C -0.14 -3.44 5.50 -26.73 -0.15 -3.58 16 3 C 0.21 5.37 2.33 -68.87 -0.16 5.20 16 4 H 0.03 0.86 7.86 -51.93 -0.41 0.45 16 5 C -0.49 -13.30 7.35 -34.44 -0.25 -13.55 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.06 1.53 5.22 -17.82 -0.09 1.44 16 8 N -0.90 -25.53 11.39 55.43 0.63 -24.90 16 9 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.69 -14.60 6.25 -107.96 -0.68 -15.28 16 14 C 0.06 1.10 5.48 -3.83 -0.02 1.08 16 15 C -0.12 -1.71 4.69 -26.74 -0.13 -1.84 16 16 C 0.06 0.74 5.27 -3.82 -0.02 0.72 16 17 N -0.53 -6.14 4.09 -234.66 -0.96 -7.10 16 18 C 0.06 0.61 4.71 -3.83 -0.02 0.59 16 19 C -0.09 -0.78 2.53 -90.54 -0.23 -1.01 16 20 H 0.08 0.74 6.58 -51.93 -0.34 0.40 16 21 C -0.15 -1.05 9.20 37.16 0.34 -0.70 16 22 C -0.11 -0.94 4.79 -26.61 -0.13 -1.07 16 23 C -0.09 -0.85 3.21 -90.54 -0.29 -1.14 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 C -0.14 -1.31 8.75 37.16 0.33 -0.99 16 26 C 0.05 0.58 4.29 -3.83 -0.02 0.56 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 1.56 7.05 -51.93 -0.37 1.20 16 29 H 0.03 0.59 6.42 -51.93 -0.33 0.26 16 30 H 0.01 0.23 7.24 -51.93 -0.38 -0.15 16 31 H 0.09 2.43 6.25 -51.93 -0.32 2.10 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.33 6.65 6.56 -39.29 -0.26 6.39 16 34 H 0.02 0.32 7.23 -51.93 -0.38 -0.05 16 35 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 36 H 0.07 1.05 6.21 -51.93 -0.32 0.73 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 40 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 41 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 48 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.07 0.72 6.01 -51.93 -0.31 0.41 16 50 H 0.09 1.04 5.81 -51.92 -0.30 0.74 16 51 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -27.51 374.81 -10.89 -38.39 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -10.02 Total: 3.46 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -0.49 Total: -16.69 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -1.00 Total: -47.27 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.51 -10.89 -38.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152777.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.548 kcal (2) G-P(sol) polarization free energy of solvation -27.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds