Wall clock time and date at job start Tue Mar 31 2020 05:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46889 * 2 1 4 4 H 1.08998 * 109.47250 * 185.15561 * 3 2 1 5 5 C 1.50703 * 109.47110 * 305.15951 * 3 2 1 6 6 H 1.07994 * 120.00315 * 120.00389 * 5 3 2 7 7 C 1.37880 * 119.99561 * 299.99956 * 5 3 2 8 8 N 1.31520 * 120.00299 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99898 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47288 * 89.99919 * 9 7 5 11 11 H 1.48504 * 109.47138 * 210.00274 * 9 7 5 12 12 H 1.48506 * 109.47055 * 330.00072 * 9 7 5 13 13 N 1.46896 * 109.47199 * 65.15617 * 3 2 1 14 14 C 1.46899 * 110.99938 * 85.90276 * 13 3 2 15 15 C 1.53006 * 109.47374 * 174.84684 * 14 13 3 16 16 C 1.52995 * 109.47216 * 179.97438 * 15 14 13 17 17 N 1.46908 * 109.46820 * 179.97438 * 16 15 14 18 18 C 1.46846 * 110.99730 * 170.00015 * 17 16 15 19 19 C 1.53037 * 109.51556 * 174.16622 * 18 17 16 20 20 H 1.08999 * 109.50147 * 299.23877 * 19 18 17 21 21 C 1.52999 * 109.50350 * 179.11528 * 19 18 17 22 22 C 1.53096 * 109.28719 * 59.18417 * 19 18 17 23 23 C 1.53118 * 109.16021 * 302.34263 * 22 19 18 24 24 H 1.09005 * 109.50012 * 297.71629 * 23 22 19 25 25 C 1.52998 * 109.50885 * 177.59752 * 23 22 19 26 26 C 1.46849 * 110.99702 * 45.79460 * 17 16 15 27 27 H 1.08994 * 109.47125 * 294.84925 * 1 2 3 28 28 H 1.09002 * 109.46742 * 54.85698 * 1 2 3 29 29 H 1.09005 * 109.46845 * 174.84662 * 1 2 3 30 30 H 1.08998 * 109.47604 * 239.99899 * 2 1 3 31 31 H 1.08997 * 109.46738 * 119.99491 * 2 1 3 32 32 H 0.96996 * 119.99603 * 179.97438 * 8 7 5 33 33 H 1.00897 * 111.00231 * 321.94700 * 13 3 2 34 34 H 1.08994 * 109.47260 * 54.84949 * 14 13 3 35 35 H 1.09002 * 109.47094 * 294.84576 * 14 13 3 36 36 H 1.09003 * 109.46856 * 59.99713 * 15 14 13 37 37 H 1.09002 * 109.46922 * 299.99997 * 15 14 13 38 38 H 1.09003 * 109.47149 * 60.00252 * 16 15 14 39 39 H 1.08992 * 109.47506 * 300.00098 * 16 15 14 40 40 H 1.09003 * 109.46501 * 294.18208 * 18 17 16 41 41 H 1.09005 * 109.46339 * 54.15732 * 18 17 16 42 42 H 1.09004 * 109.47070 * 60.00446 * 21 19 18 43 43 H 1.09000 * 109.47122 * 180.02562 * 21 19 18 44 44 H 1.08998 * 109.47462 * 300.00244 * 21 19 18 45 45 H 1.08999 * 109.52606 * 182.43608 * 22 19 18 46 46 H 1.09003 * 109.57704 * 62.27696 * 22 19 18 47 47 H 1.09006 * 109.46514 * 300.19530 * 25 23 22 48 48 H 1.08996 * 109.46872 * 60.18901 * 25 23 22 49 49 H 1.08993 * 109.47154 * 180.19391 * 25 23 22 50 50 H 1.08998 * 109.45975 * 305.84972 * 26 17 16 51 51 H 1.09000 * 109.46314 * 65.83366 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4440 -0.0923 5 6 1.4360 2.1888 -1.1616 6 1 0.8269 3.0627 -0.9840 7 6 1.6612 1.7559 -2.4512 8 7 2.4026 0.6913 -2.6674 9 14 0.9132 2.6813 -3.8911 10 1 1.8552 3.7355 -4.3451 11 1 0.6537 1.7355 -5.0063 12 1 -0.3643 3.3085 -3.4666 13 7 1.6546 2.0981 1.2568 14 6 2.6431 1.8368 2.3115 15 6 2.2771 2.6370 3.5632 16 6 3.3062 2.3644 4.6619 17 7 2.9551 3.1332 5.8635 18 6 3.7750 2.7214 7.0100 19 6 3.4857 3.6379 8.2009 20 1 3.7384 4.6654 7.9392 21 6 4.3238 3.1949 9.4019 22 6 1.9989 3.5517 8.5559 23 6 1.1665 3.9389 7.3305 24 1 1.3827 4.9712 7.0550 25 6 -0.3213 3.7979 7.6583 26 6 1.5228 3.0137 6.1647 27 1 -0.3633 0.4318 0.9325 28 1 -0.3633 0.5916 -0.8404 29 1 -0.3633 -1.0236 -0.0923 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 2.5607 0.3866 -3.5746 33 1 0.7319 1.8104 1.5466 34 1 3.6320 2.1366 1.9650 35 1 2.6483 0.7730 2.5491 36 1 1.2880 2.3372 3.9098 37 1 2.2718 3.7008 3.3257 38 1 4.2954 2.6639 4.3156 39 1 3.3111 1.3006 4.8994 40 1 3.5351 1.6921 7.2770 41 1 4.8302 2.7914 6.7458 42 1 5.3821 3.2531 9.1477 43 1 4.1170 3.8477 10.2499 44 1 4.0690 2.1679 9.6638 45 1 1.7800 4.2356 9.3759 46 1 1.7535 2.5330 8.8559 47 1 -0.5360 2.7657 7.9352 48 1 -0.5745 4.4570 8.4886 49 1 -0.9133 4.0703 6.7846 50 1 0.9422 3.2960 5.2865 51 1 1.2935 1.9832 6.4360 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:53 Heat of formation + Delta-G solvation = -28.265972 kcal Electronic energy + Delta-G solvation = -22973.726272 eV Core-core repulsion = 19906.499547 eV Total energy + Delta-G solvation = -3067.226725 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.62886 -36.82432 -35.27253 -33.67847 -32.90538 -31.21454 -29.34499 -26.95027 -26.79125 -26.38660 -24.79127 -23.21813 -22.10321 -21.27716 -20.16195 -19.81267 -19.25399 -16.22597 -15.83404 -15.57397 -15.32438 -14.78497 -14.68923 -14.56182 -14.39228 -13.64984 -13.46129 -13.06685 -12.95632 -12.70915 -12.67713 -12.41287 -12.32057 -12.09933 -11.95520 -11.89229 -11.56526 -11.26333 -11.05923 -10.97718 -10.87162 -10.77115 -10.61797 -10.52716 -10.47908 -10.35812 -10.13590 -9.88985 -9.67892 -9.52716 -8.94284 -8.31357 -8.30736 -7.15405 -5.94322 -3.95596 3.34989 3.41342 3.45258 3.80386 4.46315 4.47949 4.62333 4.65714 4.81518 5.08811 5.17696 5.21264 5.23310 5.34050 5.37047 5.37285 5.40185 5.46932 5.54730 5.57358 5.63263 5.66465 5.69418 5.75472 5.86816 5.88823 5.94351 5.98412 6.01480 6.05982 6.15630 6.19158 6.29795 6.36670 6.39322 6.54870 6.62355 6.64200 6.91834 7.08751 7.10604 7.31152 7.33881 7.54537 7.73101 7.93226 8.33052 8.60425 8.67782 9.10412 9.67979 11.12792 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.028485 B = 0.002830 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.721198 B = 9890.382036 C =10143.113998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.685 5.685 14 C 0.062 3.938 15 C -0.117 4.117 16 C 0.058 3.942 17 N -0.538 5.538 18 C 0.061 3.939 19 C -0.090 4.090 20 H 0.078 0.922 21 C -0.146 4.146 22 C -0.110 4.110 23 C -0.091 4.091 24 H 0.078 0.922 25 C -0.146 4.146 26 C 0.053 3.947 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.022 0.978 30 H 0.092 0.908 31 H 0.009 0.991 32 H 0.258 0.742 33 H 0.325 0.675 34 H 0.064 0.936 35 H 0.013 0.987 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.029 0.971 40 H 0.030 0.970 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.055 0.945 49 H 0.058 0.942 50 H 0.086 0.914 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 3.077 22.430 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.315 5.315 14 C -0.068 4.068 15 C -0.155 4.155 16 C -0.070 4.070 17 N -0.262 5.262 18 C -0.067 4.067 19 C -0.109 4.109 20 H 0.097 0.903 21 C -0.204 4.204 22 C -0.147 4.147 23 C -0.109 4.109 24 H 0.096 0.904 25 C -0.204 4.204 26 C -0.075 4.075 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.110 0.890 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.142 0.858 34 H 0.082 0.918 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.077 0.923 50 H 0.104 0.896 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.530 4.066 21.990 22.369 hybrid contribution -0.646 -1.524 -0.483 1.725 sum -0.116 2.541 21.507 21.657 Atomic orbital electron populations 1.21597 0.97718 0.98615 1.00764 1.22100 0.94994 1.01231 1.00140 1.19207 0.95878 0.88519 0.85663 0.95079 1.21091 1.30387 1.11407 0.89707 0.92034 1.24925 0.95614 0.95177 0.98743 1.69887 1.39201 1.24017 1.20622 0.86574 0.79618 0.79530 0.82133 1.20820 1.21500 1.19938 1.60776 1.03760 1.63213 1.03756 1.21825 0.97543 0.95798 0.91681 1.21715 0.97638 1.02223 0.93903 1.22113 1.00097 0.94902 0.89846 1.61953 1.04271 1.56233 1.03721 1.22124 0.97817 0.96331 0.90451 1.21161 0.95082 1.00450 0.94205 0.90333 1.21794 0.99792 1.01176 0.97607 1.21704 0.94374 1.01223 0.97431 1.21179 0.94614 1.00535 0.94610 0.90352 1.21791 0.95502 1.01568 1.01562 1.22287 0.89150 0.97469 0.98553 0.95448 0.91192 0.95841 0.88961 0.97221 0.93170 0.85777 0.91787 0.96897 0.92385 0.90413 0.90602 0.95277 0.95227 0.90933 0.92572 0.92558 0.92902 0.92026 0.92436 0.92924 0.92634 0.92327 0.89569 0.95306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.40 37.16 0.35 -2.44 16 2 C -0.15 -3.44 5.51 -26.73 -0.15 -3.59 16 3 C 0.22 5.38 2.33 -68.87 -0.16 5.22 16 4 H 0.03 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.49 -13.31 7.25 -34.44 -0.25 -13.56 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.53 5.28 -17.82 -0.09 1.44 16 8 N -0.90 -25.55 11.38 55.43 0.63 -24.91 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.68 -14.61 6.21 -107.95 -0.67 -15.28 16 14 C 0.06 1.12 5.51 -3.82 -0.02 1.10 16 15 C -0.12 -1.72 4.77 -26.73 -0.13 -1.85 16 16 C 0.06 0.75 5.27 -3.82 -0.02 0.73 16 17 N -0.54 -6.43 4.81 -234.66 -1.13 -7.55 16 18 C 0.06 0.63 4.71 -3.83 -0.02 0.61 16 19 C -0.09 -0.79 2.88 -90.55 -0.26 -1.05 16 20 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 21 C -0.15 -1.05 9.20 37.16 0.34 -0.71 16 22 C -0.11 -0.94 4.57 -26.62 -0.12 -1.06 16 23 C -0.09 -0.86 2.88 -90.54 -0.26 -1.12 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 25 C -0.15 -1.21 9.20 37.16 0.34 -0.87 16 26 C 0.05 0.60 4.13 -3.83 -0.02 0.58 16 27 H 0.03 0.53 6.63 -51.93 -0.34 0.18 16 28 H 0.07 1.65 6.85 -51.93 -0.36 1.29 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 2.45 6.22 -51.93 -0.32 2.13 16 31 H 0.01 0.20 7.50 -51.93 -0.39 -0.19 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.32 6.62 6.70 -39.29 -0.26 6.36 16 34 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 35 H 0.01 0.23 7.53 -51.93 -0.39 -0.16 16 36 H 0.06 0.83 6.21 -51.93 -0.32 0.50 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.03 0.38 8.08 -51.93 -0.42 -0.04 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.73 8.12 -51.93 -0.42 0.30 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.09 1.03 5.81 -51.93 -0.30 0.73 16 51 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -27.64 379.70 -11.16 -38.80 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -10.23 Total: 3.31 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -0.47 Total: -16.57 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -1.17 Total: -47.75 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -27.64 -11.16 -38.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.538 kcal (2) G-P(sol) polarization free energy of solvation -27.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds