Wall clock time and date at job start Tue Mar 31 2020 05:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47357 * 2 1 4 4 H 1.09003 * 109.46920 * 305.41967 * 3 2 1 5 5 C 1.50703 * 109.46972 * 185.42501 * 3 2 1 6 6 H 1.08004 * 120.00123 * 244.54164 * 5 3 2 7 7 C 1.37882 * 120.00135 * 64.55171 * 5 3 2 8 8 N 1.31513 * 119.99527 * 196.39897 * 7 5 3 9 9 Si 1.86795 * 119.99839 * 16.38677 * 7 5 3 10 10 H 1.48504 * 109.46802 * 91.08691 * 9 7 5 11 11 H 1.48505 * 109.47221 * 211.07945 * 9 7 5 12 12 H 1.48491 * 109.47777 * 331.08681 * 9 7 5 13 13 N 1.46898 * 109.47010 * 65.42466 * 3 2 1 14 14 C 1.47303 * 110.99805 * 203.22599 * 13 3 2 15 15 H 1.08661 * 108.76724 * 325.68815 * 14 13 3 16 16 C 1.52699 * 109.09371 * 86.29260 * 14 13 3 17 17 C 1.52454 * 110.80230 * 180.45628 * 16 14 13 18 18 C 1.54482 * 107.61618 * 189.09970 * 17 16 14 19 19 C 1.53144 * 109.99232 * 72.52102 * 17 16 14 20 20 C 1.51728 * 112.63837 * 307.97061 * 17 16 14 21 21 C 1.51735 * 116.04216 * 43.26109 * 20 17 16 22 22 C 1.53147 * 111.11836 * 80.61076 * 21 20 17 23 23 C 1.54481 * 107.96431 * 198.02262 * 21 20 17 24 24 N 1.46898 * 109.47552 * 179.97438 * 23 21 20 25 25 C 1.52460 * 112.61066 * 316.69148 * 21 20 17 26 26 H 1.08999 * 109.47296 * 184.64965 * 1 2 3 27 27 H 1.09004 * 109.46785 * 304.64987 * 1 2 3 28 28 H 1.08999 * 109.47145 * 64.64730 * 1 2 3 29 29 H 1.09007 * 109.47177 * 239.99682 * 2 1 3 30 30 H 1.09005 * 109.47418 * 120.00117 * 2 1 3 31 31 H 0.97006 * 119.99547 * 179.97438 * 8 7 5 32 32 H 1.00896 * 110.99795 * 79.27690 * 13 3 2 33 33 H 1.09295 * 109.28527 * 59.77978 * 16 14 13 34 34 H 1.09311 * 109.25682 * 301.09470 * 16 14 13 35 35 H 1.08996 * 109.47258 * 181.82712 * 18 17 16 36 36 H 1.08998 * 109.47121 * 301.83383 * 18 17 16 37 37 H 1.09007 * 109.46794 * 61.82722 * 18 17 16 38 38 H 1.08997 * 109.47099 * 301.24135 * 19 17 16 39 39 H 1.08998 * 109.47116 * 61.24642 * 19 17 16 40 40 H 1.09000 * 109.46324 * 181.24469 * 19 17 16 41 41 H 1.10264 * 108.55877 * 280.73326 * 20 17 16 42 42 H 1.10239 * 108.62742 * 165.93418 * 20 17 16 43 43 H 1.08997 * 109.46647 * 171.29713 * 22 21 20 44 44 H 1.08998 * 109.47240 * 291.29410 * 22 21 20 45 45 H 1.09001 * 109.46820 * 51.30009 * 22 21 20 46 46 H 1.09001 * 109.47116 * 59.99307 * 23 21 20 47 47 H 1.09007 * 109.46920 * 300.00238 * 23 21 20 48 48 H 1.00898 * 111.00373 * 179.97438 * 24 23 21 49 49 H 1.00900 * 110.99985 * 303.95373 * 24 23 21 50 50 H 1.09312 * 109.42948 * 172.66357 * 25 21 20 51 51 H 1.09300 * 109.44159 * 291.55685 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5996 1.9835 -0.8375 5 6 3.5411 1.4445 -0.1343 6 1 4.1548 1.8204 0.6709 7 6 4.1309 0.9665 -1.2853 8 7 5.4109 0.6644 -1.2916 9 14 3.1119 0.7479 -2.8355 10 1 3.1704 1.9911 -3.6457 11 1 3.6533 -0.3853 -3.6281 12 1 1.7021 0.4642 -2.4654 13 7 1.6602 2.0961 1.2595 14 6 1.6211 3.5603 1.1035 15 1 2.3973 3.8582 0.4038 16 6 0.2455 3.9706 0.5829 17 6 0.1659 5.4816 0.3960 18 6 -1.3067 5.8385 0.0951 19 6 0.9943 5.9030 -0.8211 20 6 0.5884 6.2465 1.6364 21 6 1.8282 5.7337 2.3452 22 6 3.1027 6.2216 1.6503 23 6 1.8337 6.3153 3.7763 24 7 3.0231 5.8381 4.4944 25 6 1.8486 4.2139 2.4647 26 1 -0.3634 -1.0243 0.0833 27 1 -0.3633 0.5843 0.8454 28 1 -0.3633 0.4400 -0.9287 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8258 0.3278 -2.1013 32 1 2.2823 1.8287 2.0076 33 1 -0.5198 3.6512 1.2947 34 1 0.0598 3.4757 -0.3739 35 1 -1.3928 6.9114 -0.0763 36 1 -1.6365 5.3009 -0.7938 37 1 -1.9299 5.5548 0.9433 38 1 2.0303 5.5951 -0.6797 39 1 0.5929 5.4278 -1.7161 40 1 0.9494 6.9863 -0.9335 41 1 -0.2505 6.2458 2.3520 42 1 0.7513 7.3014 1.3611 43 1 3.9689 5.9709 2.2625 44 1 3.1935 5.7389 0.6772 45 1 3.0527 7.3022 1.5167 46 1 0.9367 5.9910 4.3038 47 1 1.8518 7.4041 3.7259 48 1 3.0500 6.2054 5.4337 49 1 3.0625 4.8299 4.4987 50 1 2.8153 3.8933 2.8617 51 1 1.0644 3.8927 3.1550 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155372.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:56 Heat of formation + Delta-G solvation = -33.396613 kcal Electronic energy + Delta-G solvation = -24951.079224 eV Core-core repulsion = 21883.630018 eV Total energy + Delta-G solvation = -3067.449206 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.90255 -36.31238 -35.63332 -32.94258 -31.88276 -31.43816 -28.79566 -27.46137 -26.45891 -26.19203 -25.89308 -24.40332 -22.52747 -20.71489 -19.79425 -19.05541 -17.55319 -16.92516 -16.03417 -15.20433 -14.89537 -14.68303 -14.42619 -14.05000 -13.84079 -13.62240 -13.36504 -13.19926 -12.90311 -12.71883 -12.47668 -12.13945 -11.94397 -11.79272 -11.70149 -11.58781 -11.37697 -11.32000 -11.08258 -10.78356 -10.70349 -10.64689 -10.59879 -10.34450 -10.25987 -9.99473 -9.81156 -9.65644 -9.55274 -9.47204 -9.12156 -8.61972 -8.41517 -7.23915 -6.12105 -4.06577 3.28230 3.38015 3.42164 4.42410 4.51520 4.72163 4.83641 4.93308 5.18681 5.19332 5.22874 5.35973 5.44273 5.56149 5.64354 5.76763 5.78369 5.81316 5.84809 5.90614 5.96866 5.99390 6.04590 6.09718 6.12267 6.19048 6.27055 6.28361 6.35812 6.37771 6.40093 6.43694 6.54573 6.61550 6.68266 6.76254 6.78471 6.84766 6.86973 6.98407 7.13541 7.16202 7.27469 7.42154 7.44599 7.66660 8.14855 8.45923 8.57268 8.96343 9.56311 11.01002 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.006037 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.643383 B = 4637.024068 C = 5053.910943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.189 3.811 4 H 0.027 0.973 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.860 3.140 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.250 1.250 13 N -0.681 5.681 14 C 0.094 3.906 15 H 0.058 0.942 16 C -0.090 4.090 17 C -0.055 4.055 18 C -0.143 4.143 19 C -0.145 4.145 20 C -0.089 4.089 21 C -0.046 4.046 22 C -0.136 4.136 23 C 0.069 3.931 24 N -0.849 5.849 25 C -0.106 4.106 26 H 0.030 0.970 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.262 0.738 32 H 0.332 0.668 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.043 0.957 46 H 0.021 0.979 47 H 0.065 0.935 48 H 0.335 0.665 49 H 0.344 0.656 50 H 0.062 0.938 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.833 10.728 6.923 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C 0.080 3.920 4 H 0.045 0.955 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.687 3.313 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.174 1.174 13 N -0.310 5.310 14 C -0.016 4.016 15 H 0.076 0.924 16 C -0.128 4.128 17 C -0.056 4.056 18 C -0.200 4.200 19 C -0.202 4.202 20 C -0.127 4.127 21 C -0.047 4.047 22 C -0.193 4.193 23 C -0.062 4.062 24 N -0.380 5.380 25 C -0.144 4.144 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.149 0.851 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.039 0.961 47 H 0.083 0.917 48 H 0.147 0.853 49 H 0.158 0.842 50 H 0.081 0.919 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.963 10.958 6.154 16.677 hybrid contribution -0.069 -0.401 -0.381 0.558 sum -11.032 10.556 5.774 16.324 Atomic orbital electron populations 1.21747 0.98101 0.99183 1.00987 1.21795 0.93224 0.99246 1.00461 1.19465 0.93882 0.90591 0.88064 0.95512 1.21703 0.90720 1.42971 1.03287 0.91189 1.24934 0.94631 0.93968 0.98865 1.70015 1.11747 1.42813 1.28193 0.87232 0.82377 0.77788 0.83894 1.20776 1.21506 1.17414 1.60924 1.56295 1.05281 1.08486 1.21196 0.96095 0.88926 0.95340 0.92415 1.21430 0.97758 0.92439 1.01194 1.20340 0.94704 0.95876 0.94635 1.22283 0.95912 1.00590 1.01228 1.22046 1.01055 1.00092 0.96987 1.21263 0.96521 0.98736 0.96134 1.20340 0.95444 0.95241 0.93637 1.21935 0.97139 0.99530 1.00731 1.22255 0.90356 0.99379 0.94240 1.58719 1.42726 1.15387 1.21122 1.21616 1.01267 0.93436 0.98057 0.95129 0.92023 0.94580 0.93273 0.93072 0.92811 0.85142 0.92334 0.92401 0.93283 0.92832 0.93088 0.91663 0.92993 0.93376 0.93002 0.92738 0.91329 0.92368 0.93836 0.96083 0.91662 0.85336 0.84203 0.91892 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.86 37.16 0.37 -2.29 16 2 C -0.11 -2.37 4.90 -26.73 -0.13 -2.50 16 3 C 0.19 4.30 1.34 -68.87 -0.09 4.21 16 4 H 0.03 0.64 5.81 -51.93 -0.30 0.34 16 5 C -0.55 -14.82 8.61 -34.44 -0.30 -15.12 16 6 H 0.07 2.07 7.98 -52.48 -0.42 1.65 16 7 C 0.08 2.24 5.31 -17.82 -0.09 2.15 16 8 N -0.89 -26.88 13.96 55.43 0.77 -26.11 16 9 Si 0.86 21.19 25.80 -169.99 -4.39 16.80 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.25 -5.84 5.55 56.52 0.31 -5.52 16 13 N -0.68 -13.17 5.43 -101.12 -0.55 -13.71 16 14 C 0.09 1.63 2.11 -67.80 -0.14 1.48 16 15 H 0.06 1.18 5.38 -52.12 -0.28 0.90 16 16 C -0.09 -1.40 4.01 -27.16 -0.11 -1.51 16 17 C -0.05 -0.72 0.71 -154.58 -0.11 -0.83 16 18 C -0.14 -1.63 8.07 37.94 0.31 -1.33 16 19 C -0.14 -2.00 8.01 37.23 0.30 -1.70 16 20 C -0.09 -1.06 3.48 -28.02 -0.10 -1.16 16 21 C -0.05 -0.58 0.57 -154.57 -0.09 -0.67 16 22 C -0.14 -1.91 7.97 37.23 0.30 -1.62 16 23 C 0.07 0.76 5.44 -3.05 -0.02 0.75 16 24 N -0.85 -9.25 8.58 -9.67 -0.08 -9.34 16 25 C -0.11 -1.53 3.16 -27.16 -0.09 -1.61 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 1.11 7.64 -51.93 -0.40 0.71 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 1.14 5.04 -51.93 -0.26 0.88 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.33 6.54 8.02 -39.29 -0.32 6.23 16 33 H 0.06 0.90 8.10 -51.76 -0.42 0.48 16 34 H 0.06 1.00 7.42 -51.75 -0.38 0.62 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.55 8.05 -51.93 -0.42 0.14 16 38 H 0.06 1.01 4.83 -51.93 -0.25 0.76 16 39 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 40 H 0.05 0.58 8.05 -51.93 -0.42 0.16 16 41 H 0.05 0.59 7.57 -51.21 -0.39 0.20 16 42 H 0.05 0.62 7.82 -51.22 -0.40 0.22 16 43 H 0.07 1.03 7.27 -51.93 -0.38 0.65 16 44 H 0.06 0.92 4.81 -51.93 -0.25 0.67 16 45 H 0.04 0.56 8.00 -51.93 -0.42 0.14 16 46 H 0.02 0.23 8.05 -51.93 -0.42 -0.19 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.33 2.97 9.08 -39.29 -0.36 2.61 16 49 H 0.34 3.84 7.04 -39.29 -0.28 3.56 16 50 H 0.06 0.96 6.80 -51.75 -0.35 0.61 16 51 H 0.06 0.79 8.11 -51.76 -0.42 0.37 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -28.25 363.22 -8.47 -36.72 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -9.70 Total: 11.91 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 0.00 Total: -21.74 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.14 Total: -49.16 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.39 Total: 16.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.25 -8.47 -36.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155372.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.323 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds