Wall clock time and date at job start Tue Mar 31 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47357 * 2 1 4 4 H 1.09003 * 109.46920 * 305.41967 * 3 2 1 5 5 C 1.50703 * 109.46972 * 185.42501 * 3 2 1 6 6 H 1.08004 * 120.00123 * 244.54164 * 5 3 2 7 7 C 1.37882 * 120.00135 * 64.55171 * 5 3 2 8 8 N 1.31513 * 119.99527 * 196.39897 * 7 5 3 9 9 Si 1.86795 * 119.99839 * 16.38677 * 7 5 3 10 10 H 1.48504 * 109.46802 * 91.08691 * 9 7 5 11 11 H 1.48505 * 109.47221 * 211.07945 * 9 7 5 12 12 H 1.48491 * 109.47777 * 331.08681 * 9 7 5 13 13 N 1.46898 * 109.47010 * 65.42466 * 3 2 1 14 14 C 1.47303 * 110.99805 * 203.22599 * 13 3 2 15 15 H 1.08661 * 108.76724 * 325.68815 * 14 13 3 16 16 C 1.52699 * 109.09371 * 86.29260 * 14 13 3 17 17 C 1.52454 * 110.80230 * 180.45628 * 16 14 13 18 18 C 1.54482 * 107.61618 * 189.09970 * 17 16 14 19 19 C 1.53144 * 109.99232 * 72.52102 * 17 16 14 20 20 C 1.51728 * 112.63837 * 307.97061 * 17 16 14 21 21 C 1.51735 * 116.04216 * 43.26109 * 20 17 16 22 22 C 1.53147 * 111.11836 * 80.61076 * 21 20 17 23 23 C 1.54481 * 107.96431 * 198.02262 * 21 20 17 24 24 N 1.46898 * 109.47552 * 179.97438 * 23 21 20 25 25 C 1.52460 * 112.61066 * 316.69148 * 21 20 17 26 26 H 1.08999 * 109.47296 * 184.64965 * 1 2 3 27 27 H 1.09004 * 109.46785 * 304.64987 * 1 2 3 28 28 H 1.08999 * 109.47145 * 64.64730 * 1 2 3 29 29 H 1.09007 * 109.47177 * 239.99682 * 2 1 3 30 30 H 1.09005 * 109.47418 * 120.00117 * 2 1 3 31 31 H 0.97006 * 119.99547 * 179.97438 * 8 7 5 32 32 H 1.00896 * 110.99795 * 79.27690 * 13 3 2 33 33 H 1.09295 * 109.28527 * 59.77978 * 16 14 13 34 34 H 1.09311 * 109.25682 * 301.09470 * 16 14 13 35 35 H 1.08996 * 109.47258 * 181.82712 * 18 17 16 36 36 H 1.08998 * 109.47121 * 301.83383 * 18 17 16 37 37 H 1.09007 * 109.46794 * 61.82722 * 18 17 16 38 38 H 1.08997 * 109.47099 * 301.24135 * 19 17 16 39 39 H 1.08998 * 109.47116 * 61.24642 * 19 17 16 40 40 H 1.09000 * 109.46324 * 181.24469 * 19 17 16 41 41 H 1.10264 * 108.55877 * 280.73326 * 20 17 16 42 42 H 1.10239 * 108.62742 * 165.93418 * 20 17 16 43 43 H 1.08997 * 109.46647 * 171.29713 * 22 21 20 44 44 H 1.08998 * 109.47240 * 291.29410 * 22 21 20 45 45 H 1.09001 * 109.46820 * 51.30009 * 22 21 20 46 46 H 1.09001 * 109.47116 * 59.99307 * 23 21 20 47 47 H 1.09007 * 109.46920 * 300.00238 * 23 21 20 48 48 H 1.00898 * 111.00373 * 179.97438 * 24 23 21 49 49 H 1.00900 * 110.99985 * 303.95373 * 24 23 21 50 50 H 1.09312 * 109.42948 * 172.66357 * 25 21 20 51 51 H 1.09300 * 109.44159 * 291.55685 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5996 1.9835 -0.8375 5 6 3.5411 1.4445 -0.1343 6 1 4.1548 1.8204 0.6709 7 6 4.1309 0.9665 -1.2853 8 7 5.4109 0.6644 -1.2916 9 14 3.1119 0.7479 -2.8355 10 1 3.1704 1.9911 -3.6457 11 1 3.6533 -0.3853 -3.6281 12 1 1.7021 0.4642 -2.4654 13 7 1.6602 2.0961 1.2595 14 6 1.6211 3.5603 1.1035 15 1 2.3973 3.8582 0.4038 16 6 0.2455 3.9706 0.5829 17 6 0.1659 5.4816 0.3960 18 6 -1.3067 5.8385 0.0951 19 6 0.9943 5.9030 -0.8211 20 6 0.5884 6.2465 1.6364 21 6 1.8282 5.7337 2.3452 22 6 3.1027 6.2216 1.6503 23 6 1.8337 6.3153 3.7763 24 7 3.0231 5.8381 4.4944 25 6 1.8486 4.2139 2.4647 26 1 -0.3634 -1.0243 0.0833 27 1 -0.3633 0.5843 0.8454 28 1 -0.3633 0.4400 -0.9287 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8258 0.3278 -2.1013 32 1 2.2823 1.8287 2.0076 33 1 -0.5198 3.6512 1.2947 34 1 0.0598 3.4757 -0.3739 35 1 -1.3928 6.9114 -0.0763 36 1 -1.6365 5.3009 -0.7938 37 1 -1.9299 5.5548 0.9433 38 1 2.0303 5.5951 -0.6797 39 1 0.5929 5.4278 -1.7161 40 1 0.9494 6.9863 -0.9335 41 1 -0.2505 6.2458 2.3520 42 1 0.7513 7.3014 1.3611 43 1 3.9689 5.9709 2.2625 44 1 3.1935 5.7389 0.6772 45 1 3.0527 7.3022 1.5167 46 1 0.9367 5.9910 4.3038 47 1 1.8518 7.4041 3.7259 48 1 3.0500 6.2054 5.4337 49 1 3.0625 4.8299 4.4987 50 1 2.8153 3.8933 2.8617 51 1 1.0644 3.8927 3.1550 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155372.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:55 Heat of formation + Delta-G solvation = -52.076984 kcal Electronic energy + Delta-G solvation = -24951.889266 eV Core-core repulsion = 21883.630018 eV Total energy + Delta-G solvation = -3068.259248 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05864 -37.93696 -36.68882 -34.63929 -33.71788 -32.52024 -30.33846 -28.53925 -28.04702 -27.40874 -27.12754 -25.34326 -24.33766 -22.09104 -21.43486 -20.26906 -19.01606 -18.69766 -17.11762 -16.88139 -16.22056 -15.83099 -15.70498 -15.35877 -15.27638 -14.92528 -14.74760 -14.43078 -14.34811 -14.15074 -13.96933 -13.38343 -13.33127 -13.24789 -12.96435 -12.85788 -12.80438 -12.62514 -12.46765 -12.35946 -12.14604 -11.94680 -11.81828 -11.72904 -11.54030 -11.47559 -11.39664 -11.26971 -11.07059 -10.78069 -10.66905 -10.58423 -9.46516 -8.96081 -8.34060 -6.31591 1.28940 1.33453 1.43571 2.32157 3.01701 3.45099 3.58764 3.81566 3.91577 4.03267 4.14937 4.26337 4.32859 4.41841 4.46961 4.58062 4.61161 4.64081 4.67835 4.75154 4.80512 4.82557 4.84161 4.88275 4.94420 5.00655 5.02611 5.03386 5.13905 5.18889 5.20508 5.22384 5.26396 5.28682 5.35119 5.41700 5.47824 5.49944 5.55612 5.58634 5.61472 5.69208 5.72974 5.76648 6.16751 6.32030 6.49087 6.66262 6.72188 6.88781 7.35250 8.82552 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.006037 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.643383 B = 4637.024068 C = 5053.910943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.110 4.110 3 C 0.199 3.801 4 H 0.019 0.981 5 C -0.544 4.544 6 H 0.030 0.970 7 C 0.024 3.976 8 N -0.940 5.940 9 Si 0.919 3.081 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.227 1.227 13 N -0.669 5.669 14 C 0.095 3.905 15 H 0.019 0.981 16 C -0.082 4.082 17 C -0.054 4.054 18 C -0.137 4.137 19 C -0.145 4.145 20 C -0.088 4.088 21 C -0.042 4.042 22 C -0.131 4.131 23 C 0.075 3.925 24 N -0.860 5.860 25 C -0.095 4.095 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.327 0.673 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.039 0.961 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.032 0.968 45 H 0.057 0.943 46 H 0.034 0.966 47 H 0.075 0.925 48 H 0.348 0.652 49 H 0.341 0.659 50 H 0.047 0.953 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.023 11.967 7.536 19.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.149 4.149 3 C 0.089 3.911 4 H 0.037 0.963 5 C -0.583 4.583 6 H 0.048 0.952 7 C -0.175 4.175 8 N -0.579 5.579 9 Si 0.744 3.256 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.150 1.150 13 N -0.297 5.297 14 C -0.015 4.015 15 H 0.037 0.963 16 C -0.120 4.120 17 C -0.055 4.055 18 C -0.195 4.195 19 C -0.202 4.202 20 C -0.126 4.126 21 C -0.043 4.043 22 C -0.188 4.188 23 C -0.056 4.056 24 N -0.391 5.391 25 C -0.134 4.134 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.144 0.856 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.076 0.924 46 H 0.052 0.948 47 H 0.093 0.907 48 H 0.161 0.839 49 H 0.154 0.846 50 H 0.066 0.934 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.180 12.211 6.788 19.906 hybrid contribution 1.031 -0.757 -0.500 1.374 sum -13.148 11.454 6.288 18.537 Atomic orbital electron populations 1.21632 0.95008 1.00896 1.01401 1.21727 0.95937 0.97670 0.99545 1.19292 0.90670 0.91826 0.89337 0.96276 1.22009 0.92998 1.41426 1.01893 0.95214 1.25732 0.95619 0.94059 1.02073 1.70145 1.13757 1.44904 1.29105 0.86275 0.82003 0.77610 0.79755 1.20720 1.21290 1.14968 1.60984 1.55263 1.06701 1.06751 1.21239 0.96328 0.87581 0.96360 0.96299 1.21358 0.96254 0.94368 1.00021 1.20330 0.96161 0.94055 0.94913 1.22222 0.94139 1.01621 1.01472 1.22047 0.99603 1.01272 0.97250 1.21237 0.96441 0.99089 0.95798 1.20308 0.95208 0.93705 0.95110 1.21871 0.97578 1.00188 0.99209 1.22183 0.90850 0.99773 0.92790 1.58702 1.42971 1.15276 1.22196 1.21511 1.00817 0.94827 0.96196 0.92824 0.91335 0.94368 0.94732 0.93578 0.92787 0.85633 0.91445 0.94505 0.91644 0.93323 0.92010 0.94242 0.93740 0.91415 0.91104 0.91310 0.92895 0.94908 0.92388 0.94803 0.90660 0.83908 0.84564 0.93397 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.86 71.98 0.71 -3.86 16 2 C -0.11 -4.72 4.90 30.59 0.15 -4.57 16 3 C 0.20 9.15 1.34 44.17 0.06 9.21 16 4 H 0.02 0.93 5.81 -2.39 -0.01 0.91 16 5 C -0.54 -30.72 8.61 25.60 0.22 -30.50 16 6 H 0.03 1.87 7.98 -2.91 -0.02 1.85 16 7 C 0.02 1.40 5.31 84.66 0.45 1.85 16 8 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 9 Si 0.92 44.47 25.80 68.60 1.77 46.24 16 10 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.23 -10.04 5.55 99.48 0.55 -9.49 16 13 N -0.67 -26.13 5.43 -473.85 -2.57 -28.70 16 14 C 0.09 3.30 2.11 44.64 0.09 3.40 16 15 H 0.02 0.82 5.38 -2.57 -0.01 0.80 16 16 C -0.08 -2.45 4.01 30.31 0.12 -2.33 16 17 C -0.05 -1.30 0.71 -52.23 -0.04 -1.34 16 18 C -0.14 -2.68 8.07 72.49 0.58 -2.09 16 19 C -0.14 -3.88 8.01 72.03 0.58 -3.30 16 20 C -0.09 -1.85 3.48 29.76 0.10 -1.75 16 21 C -0.04 -1.01 0.57 -52.22 -0.03 -1.04 16 22 C -0.13 -3.69 7.97 72.03 0.57 -3.12 16 23 C 0.07 1.46 5.44 86.81 0.47 1.94 16 24 N -0.86 -17.54 8.58 -184.51 -1.58 -19.12 16 25 C -0.10 -2.71 3.16 30.32 0.10 -2.62 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 2.27 7.64 -2.38 -0.02 2.25 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.03 1.56 5.04 -2.38 -0.01 1.55 16 30 H 0.05 1.98 8.14 -2.38 -0.02 1.97 16 31 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 32 H 0.33 13.26 8.02 -89.70 -0.72 12.54 16 33 H 0.07 1.90 8.10 -2.23 -0.02 1.89 16 34 H 0.04 1.25 7.42 -2.22 -0.02 1.23 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.09 8.05 -2.38 -0.02 1.07 16 38 H 0.04 1.26 4.83 -2.39 -0.01 1.24 16 39 H 0.04 1.22 8.13 -2.39 -0.02 1.21 16 40 H 0.07 1.52 8.05 -2.39 -0.02 1.50 16 41 H 0.07 1.28 7.57 -1.71 -0.01 1.27 16 42 H 0.07 1.30 7.82 -1.72 -0.01 1.29 16 43 H 0.05 1.63 7.27 -2.39 -0.02 1.61 16 44 H 0.03 1.08 4.81 -2.39 -0.01 1.07 16 45 H 0.06 1.43 8.00 -2.39 -0.02 1.41 16 46 H 0.03 0.60 8.05 -2.39 -0.02 0.58 16 47 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 48 H 0.35 5.52 9.08 -89.70 -0.81 4.71 16 49 H 0.34 7.37 7.04 -89.69 -0.63 6.73 16 50 H 0.05 1.50 6.80 -2.22 -0.02 1.48 16 51 H 0.07 1.80 8.11 -2.23 -0.02 1.79 16 Total: -1.00 -63.43 363.22 0.66 -62.76 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -1.40 Total: 37.70 kcal Atomic # 6 Polarization: -44.28 SS G_CDS: 4.14 Total: -40.13 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -3.85 Total: -106.58 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.77 Total: 46.24 kcal Total: -63.43 0.66 -62.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155372.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.686 kcal (2) G-P(sol) polarization free energy of solvation -63.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds