Wall clock time and date at job start Tue Mar 31 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47008 * 2 1 4 4 H 1.09004 * 109.47248 * 175.71500 * 3 2 1 5 5 C 1.50706 * 109.47284 * 55.71389 * 3 2 1 6 6 H 1.07994 * 119.99863 * 240.00221 * 5 3 2 7 7 C 1.37880 * 119.99713 * 59.99949 * 5 3 2 8 8 N 1.31515 * 119.99747 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99948 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47233 * 60.00000 * 9 7 5 11 11 H 1.48502 * 109.47192 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47072 * 299.99750 * 9 7 5 13 13 N 1.46898 * 109.47097 * 295.71361 * 3 2 1 14 14 C 1.46893 * 111.00254 * 273.69427 * 13 3 2 15 15 H 1.09000 * 109.46996 * 35.33519 * 14 13 3 16 16 C 1.53009 * 109.47088 * 275.33714 * 14 13 3 17 17 C 1.52999 * 109.47096 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47203 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.46855 * 300.00122 * 17 16 14 20 20 C 1.53004 * 109.47202 * 59.99846 * 17 16 14 21 21 C 1.52995 * 109.47130 * 299.99943 * 20 17 16 22 22 C 1.53004 * 109.47130 * 179.97438 * 21 20 17 23 23 C 1.53000 * 109.47524 * 300.00089 * 21 20 17 24 24 N 1.46901 * 109.47174 * 189.18422 * 23 21 20 25 25 C 1.53003 * 109.47255 * 155.33941 * 14 13 3 26 26 H 1.08997 * 109.46850 * 179.38869 * 1 2 3 27 27 H 1.09008 * 109.46976 * 59.39051 * 1 2 3 28 28 H 1.09004 * 109.47056 * 299.39385 * 1 2 3 29 29 H 1.08992 * 109.47025 * 119.99673 * 2 1 3 30 30 H 1.09002 * 109.46988 * 240.00127 * 2 1 3 31 31 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 32 32 H 1.00906 * 111.00144 * 37.65104 * 13 3 2 33 33 H 1.09000 * 109.47043 * 299.99777 * 16 14 13 34 34 H 1.08991 * 109.46904 * 59.99914 * 16 14 13 35 35 H 1.09000 * 109.46794 * 59.99580 * 18 17 16 36 36 H 1.08996 * 109.47156 * 180.02562 * 18 17 16 37 37 H 1.09000 * 109.46868 * 299.99764 * 18 17 16 38 38 H 1.08999 * 109.47544 * 19.97003 * 19 17 16 39 39 H 1.09006 * 109.46841 * 139.97478 * 19 17 16 40 40 H 1.09001 * 109.47181 * 259.96440 * 19 17 16 41 41 H 1.09000 * 109.47154 * 60.00061 * 20 17 16 42 42 H 1.09002 * 109.46847 * 180.02562 * 20 17 16 43 43 H 1.08996 * 109.47193 * 59.99524 * 22 21 20 44 44 H 1.08994 * 109.46975 * 180.02562 * 22 21 20 45 45 H 1.09007 * 109.46501 * 300.00136 * 22 21 20 46 46 H 1.09004 * 109.46453 * 309.18031 * 23 21 20 47 47 H 1.08997 * 109.47050 * 69.17753 * 23 21 20 48 48 H 1.00893 * 110.99915 * 56.04542 * 24 23 21 49 49 H 1.00902 * 110.99355 * 180.02562 * 24 23 21 50 50 H 1.09002 * 109.47013 * 299.99654 * 25 14 13 51 51 H 1.09000 * 109.47463 * 59.99864 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4435 0.0768 5 6 1.4528 2.1830 1.1740 6 1 0.8412 3.0577 1.0095 7 6 1.6965 1.7435 2.4579 8 7 2.4409 0.6779 2.6581 9 14 0.9681 2.6608 3.9130 10 1 -0.5131 2.6589 3.8083 11 1 1.3765 1.9920 5.1745 12 1 1.4626 4.0611 3.9133 13 7 1.6367 2.1045 -1.2478 14 6 2.6148 1.8564 -2.3153 15 1 3.0178 0.8490 -2.2120 16 6 3.7526 2.8741 -2.2110 17 6 4.7717 2.6154 -3.3225 18 6 5.9098 3.6325 -3.2178 19 6 5.3372 1.2012 -3.1768 20 6 4.0874 2.7532 -4.6840 21 6 2.9497 1.7356 -4.7883 22 6 2.2650 1.8738 -6.1496 23 6 3.5152 0.3214 -4.6426 24 7 2.4687 -0.6595 -4.9597 25 6 1.9301 1.9948 -3.6766 26 1 -0.3633 -1.0276 -0.0110 27 1 -0.3633 0.5233 -0.8845 28 1 -0.3633 0.5044 0.8954 29 1 1.8933 -0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 2.6126 0.3690 3.5614 32 1 0.7125 1.8132 -1.5293 33 1 3.3496 3.8815 -2.3144 34 1 4.2403 2.7755 -1.2413 35 1 6.3971 3.5339 -2.2478 36 1 6.6356 3.4485 -4.0099 37 1 5.5072 4.6401 -3.3214 38 1 4.6594 0.5994 -2.5713 39 1 5.4426 0.7487 -4.1628 40 1 6.3126 1.2480 -2.6925 41 1 3.6845 3.7606 -4.7879 42 1 4.8134 2.5684 -5.4758 43 1 2.9908 1.6899 -6.9417 44 1 1.4542 1.1492 -6.2237 45 1 1.8620 2.8814 -6.2529 46 1 4.3532 0.1930 -5.3277 47 1 3.8566 0.1704 -3.6186 48 1 2.0904 -0.4995 -5.8812 49 1 2.8176 -1.6021 -4.8702 50 1 1.1195 1.2698 -3.7510 51 1 1.5271 3.0023 -3.7800 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:58 Heat of formation + Delta-G solvation = -0.648106 kcal Electronic energy + Delta-G solvation = -25083.101459 eV Core-core repulsion = 22017.072335 eV Total energy + Delta-G solvation = -3066.029125 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.56695 -36.31546 -35.16812 -32.98907 -31.95648 -30.91123 -28.35065 -28.07205 -26.50230 -26.16705 -25.59805 -23.95929 -23.12776 -20.84064 -19.28566 -18.69758 -17.99779 -16.28980 -16.01166 -15.27574 -15.04492 -14.62096 -14.47487 -14.06635 -13.80900 -13.51496 -13.25443 -12.97185 -12.64871 -12.54803 -12.30037 -12.22724 -12.04751 -11.86541 -11.59901 -11.48683 -11.39278 -10.97799 -10.86871 -10.77682 -10.58790 -10.52691 -10.41431 -10.15635 -10.12032 -10.04596 -9.64268 -9.59457 -9.49202 -9.25677 -8.81760 -8.47870 -8.24340 -7.01025 -5.88347 -3.89145 3.39400 3.43379 3.46994 4.50807 4.63368 4.72190 4.82504 4.98845 5.16598 5.20963 5.33239 5.43062 5.48299 5.59376 5.63026 5.70404 5.75801 5.78102 5.85517 5.93260 5.96032 5.97954 6.00921 6.06924 6.16945 6.26628 6.29856 6.35820 6.41410 6.45020 6.46620 6.49120 6.62335 6.64118 6.69829 6.79710 6.91806 7.01572 7.05318 7.25444 7.42066 7.44357 7.50840 7.61758 7.83561 8.01111 8.43434 8.73056 8.79385 9.16988 9.74286 11.18475 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.020380 B = 0.005250 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.590274 B = 5331.942715 C = 5925.746313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.144 4.144 3 C 0.218 3.782 4 H 0.031 0.969 5 C -0.485 4.485 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.683 5.683 14 C 0.089 3.911 15 H 0.041 0.959 16 C -0.094 4.094 17 C -0.064 4.064 18 C -0.138 4.138 19 C -0.163 4.163 20 C -0.095 4.095 21 C -0.053 4.053 22 C -0.144 4.144 23 C 0.039 3.961 24 N -0.849 5.849 25 C -0.098 4.098 26 H 0.021 0.979 27 H 0.030 0.970 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.011 0.989 31 H 0.258 0.742 32 H 0.326 0.674 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.046 0.954 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.018 0.982 47 H 0.112 0.888 48 H 0.332 0.668 49 H 0.336 0.664 50 H 0.065 0.935 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.005 0.062 -16.523 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.110 3.890 4 H 0.049 0.951 5 C -0.524 4.524 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.314 5.314 14 C -0.021 4.021 15 H 0.059 0.941 16 C -0.132 4.132 17 C -0.064 4.064 18 C -0.195 4.195 19 C -0.219 4.219 20 C -0.133 4.133 21 C -0.054 4.054 22 C -0.202 4.202 23 C -0.091 4.091 24 N -0.380 5.380 25 C -0.136 4.136 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.036 0.964 47 H 0.130 0.870 48 H 0.145 0.855 49 H 0.148 0.852 50 H 0.084 0.916 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.954 0.885 -15.562 16.081 hybrid contribution 0.106 -0.805 -0.153 0.827 sum 4.060 0.080 -15.715 16.231 Atomic orbital electron populations 1.21553 0.97870 0.97949 1.01024 1.22084 0.94847 1.01325 1.00111 1.19168 0.95566 0.88339 0.85882 0.95149 1.21072 1.30279 1.11291 0.89733 0.92264 1.24901 0.95652 0.95180 0.98660 1.69877 1.39004 1.23887 1.20993 0.86676 0.79482 0.79956 0.81934 1.20468 1.21623 1.20464 1.60826 1.03745 1.63107 1.03695 1.21470 0.93508 0.96631 0.90504 0.94117 1.21591 0.94827 0.99662 0.97130 1.20542 0.95318 0.95083 0.95505 1.21884 0.97617 0.98705 1.01318 1.22745 1.00522 0.96861 1.01779 1.21692 0.96508 0.98811 0.96258 1.20497 0.95563 0.94131 0.95224 1.21872 1.00255 1.01887 0.96143 1.23168 0.91183 0.91602 1.03106 1.58822 1.38092 1.06320 1.34717 1.21644 0.97340 1.01220 0.93424 0.96034 0.95137 0.91766 0.89169 0.97009 0.93237 0.85528 0.91966 0.91780 0.92577 0.93333 0.92902 0.90821 0.91953 0.93401 0.91905 0.92781 0.93537 0.92079 0.92661 0.96355 0.87040 0.85481 0.85229 0.91583 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.40 37.16 0.35 -2.43 16 2 C -0.14 -3.44 5.51 -26.73 -0.15 -3.59 16 3 C 0.22 5.40 2.13 -68.86 -0.15 5.25 16 4 H 0.03 0.84 7.09 -51.93 -0.37 0.47 16 5 C -0.48 -13.24 7.39 -34.44 -0.25 -13.49 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 8 N -0.90 -25.59 11.36 55.43 0.63 -24.96 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 N -0.68 -14.47 6.04 -100.95 -0.61 -15.08 16 14 C 0.09 1.57 1.93 -67.71 -0.13 1.44 16 15 H 0.04 0.78 4.05 -51.93 -0.21 0.57 16 16 C -0.09 -1.59 4.17 -26.73 -0.11 -1.70 16 17 C -0.06 -0.85 0.77 -154.51 -0.12 -0.97 16 18 C -0.14 -1.67 8.23 37.16 0.31 -1.37 16 19 C -0.16 -2.13 7.29 37.16 0.27 -1.86 16 20 C -0.09 -1.13 3.60 -26.73 -0.10 -1.23 16 21 C -0.05 -0.65 0.60 -154.48 -0.09 -0.74 16 22 C -0.14 -1.51 7.89 37.16 0.29 -1.21 16 23 C 0.04 0.47 3.95 -3.82 -0.02 0.45 16 24 N -0.85 -9.71 9.12 -10.37 -0.09 -9.81 16 25 C -0.10 -1.48 3.93 -26.70 -0.10 -1.58 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.03 0.61 6.37 -51.92 -0.33 0.28 16 28 H 0.06 1.54 7.11 -51.93 -0.37 1.17 16 29 H 0.09 2.42 6.19 -51.93 -0.32 2.10 16 30 H 0.01 0.26 7.48 -51.93 -0.39 -0.13 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.33 6.79 6.11 -39.29 -0.24 6.55 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.25 7.42 -51.93 -0.39 0.87 16 35 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.11 4.34 -51.93 -0.23 0.89 16 39 H 0.06 0.72 4.98 -51.93 -0.26 0.46 16 40 H 0.05 0.61 7.70 -51.93 -0.40 0.21 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.63 6.51 -51.93 -0.34 0.29 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.02 0.21 6.96 -51.93 -0.36 -0.15 16 47 H 0.11 1.55 2.66 -51.93 -0.14 1.41 16 48 H 0.33 3.29 6.79 -39.30 -0.27 3.02 16 49 H 0.34 3.42 9.08 -39.29 -0.36 3.06 16 50 H 0.07 1.05 7.87 -51.93 -0.41 0.65 16 51 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 355.68 15.07 5.36 5.36 Total: -1.00 -27.67 355.68 -8.97 -36.64 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -9.14 Total: 12.78 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -0.09 Total: -21.57 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.07 Total: -49.85 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.67 -8.97 -36.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.992 kcal (2) G-P(sol) polarization free energy of solvation -27.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds