Wall clock time and date at job start Tue Mar 31 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47088 * 2 1 4 4 H 1.08991 * 109.47292 * 174.78324 * 3 2 1 5 5 C 1.50702 * 109.47278 * 54.77526 * 3 2 1 6 6 H 1.07991 * 120.00317 * 240.00503 * 5 3 2 7 7 C 1.37880 * 119.99580 * 60.00576 * 5 3 2 8 8 N 1.31515 * 119.99815 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99730 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47321 * 90.00403 * 9 7 5 11 11 H 1.48504 * 109.46826 * 209.99618 * 9 7 5 12 12 H 1.48495 * 109.47384 * 329.99589 * 9 7 5 13 13 N 1.46910 * 109.46754 * 294.78145 * 3 2 1 14 14 C 1.47297 * 110.99624 * 273.86959 * 13 3 2 15 15 H 1.08652 * 108.77833 * 33.35216 * 14 13 3 16 16 C 1.52710 * 109.08957 * 272.74272 * 14 13 3 17 17 C 1.52459 * 110.77486 * 179.49681 * 16 14 13 18 18 C 1.53133 * 109.99833 * 287.58350 * 17 16 14 19 19 C 1.54489 * 107.61507 * 170.99676 * 17 16 14 20 20 C 1.51732 * 112.62038 * 52.13609 * 17 16 14 21 21 C 1.51744 * 116.02898 * 316.68576 * 20 17 16 22 22 C 1.53137 * 111.11744 * 279.31969 * 21 20 17 23 23 C 1.54495 * 107.94298 * 161.93080 * 21 20 17 24 24 N 1.46902 * 109.46873 * 178.17047 * 23 21 20 25 25 C 1.52452 * 112.64341 * 43.26896 * 21 20 17 26 26 H 1.08999 * 109.47206 * 65.54302 * 1 2 3 27 27 H 1.09003 * 109.47017 * 185.53649 * 1 2 3 28 28 H 1.08999 * 109.47393 * 305.53600 * 1 2 3 29 29 H 1.08996 * 109.47484 * 239.99740 * 2 1 3 30 30 H 1.08996 * 109.47186 * 119.99498 * 2 1 3 31 31 H 0.97004 * 119.99904 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99808 * 37.82510 * 13 3 2 33 33 H 1.09296 * 109.28562 * 300.15265 * 16 14 13 34 34 H 1.09304 * 109.26557 * 58.85955 * 16 14 13 35 35 H 1.09008 * 109.46990 * 185.40904 * 18 17 16 36 36 H 1.09002 * 109.47312 * 305.40781 * 18 17 16 37 37 H 1.08999 * 109.47274 * 65.41049 * 18 17 16 38 38 H 1.09004 * 109.47140 * 298.18589 * 19 17 16 39 39 H 1.08999 * 109.47347 * 58.19261 * 19 17 16 40 40 H 1.09007 * 109.47001 * 178.18983 * 19 17 16 41 41 H 1.10234 * 108.62494 * 194.02362 * 20 17 16 42 42 H 1.10259 * 108.56224 * 79.21210 * 20 17 16 43 43 H 1.08999 * 109.47242 * 185.43517 * 22 21 20 44 44 H 1.09005 * 109.47336 * 305.43533 * 22 21 20 45 45 H 1.09002 * 109.47050 * 65.43513 * 22 21 20 46 46 H 1.08997 * 109.47302 * 298.16837 * 23 21 20 47 47 H 1.08995 * 109.47210 * 58.17517 * 23 21 20 48 48 H 1.00896 * 111.00195 * 180.02562 * 24 23 21 49 49 H 1.00907 * 111.00208 * 303.95407 * 24 23 21 50 50 H 1.09316 * 109.42161 * 187.43969 * 25 21 20 51 51 H 1.09289 * 109.45261 * 68.54769 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1259 1.4440 0.0934 5 6 1.4348 2.1894 1.1607 6 1 0.8258 3.0631 0.9821 7 6 1.6587 1.7570 2.4506 8 7 2.3999 0.6926 2.6680 9 14 0.9092 2.6830 3.8893 10 1 -0.4297 2.1194 4.1974 11 1 1.7889 2.5468 5.0780 12 1 0.7726 4.1190 3.5366 13 7 1.6558 2.0977 -1.2576 14 6 2.6508 1.8396 -2.3125 15 1 3.0663 0.8464 -2.1661 16 6 3.7501 2.8965 -2.2315 17 6 4.8097 2.6578 -3.3014 18 6 5.6540 1.4330 -2.9383 19 6 5.7532 3.8811 -3.3061 20 6 4.2155 2.5201 -4.6907 21 6 2.9652 1.6671 -4.7987 22 6 3.3157 0.1769 -4.8382 23 6 2.2684 2.0106 -6.1341 24 7 1.0741 1.1703 -6.2936 25 6 1.9703 1.9392 -3.6760 26 1 -0.3633 0.4255 -0.9354 27 1 -0.3633 -1.0229 0.0992 28 1 -0.3634 0.5973 0.8362 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.5572 0.3882 3.5755 32 1 0.7349 1.8070 -1.5501 33 1 3.3095 3.8871 -2.3704 34 1 4.2158 2.8575 -1.2434 35 1 6.4674 1.3266 -3.6561 36 1 6.0669 1.5599 -1.9375 37 1 5.0288 0.5405 -2.9628 38 1 5.1868 4.7759 -3.5641 39 1 6.1948 4.0032 -2.3171 40 1 6.5439 3.7273 -4.0406 41 1 4.9842 2.1047 -5.3628 42 1 3.9874 3.5276 -5.0764 43 1 2.4105 -0.4048 -5.0125 44 1 4.0269 -0.0079 -5.6433 45 1 3.7592 -0.1174 -3.8870 46 1 1.9761 3.0607 -6.1318 47 1 2.9552 1.8264 -6.9602 48 1 0.6005 1.3757 -7.1605 49 1 1.3104 0.1910 -6.2344 50 1 1.1567 1.2109 -3.7268 51 1 1.5497 2.9406 -3.7973 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155397.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:00 Heat of formation + Delta-G solvation = -31.541078 kcal Electronic energy + Delta-G solvation = -24771.626728 eV Core-core repulsion = 21704.257984 eV Total energy + Delta-G solvation = -3067.368744 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.90015 -36.35678 -35.66422 -33.01326 -31.68182 -30.86928 -28.22208 -27.64897 -26.50896 -26.01580 -25.58666 -24.43132 -23.14879 -20.87017 -19.47348 -18.81121 -17.61992 -16.33284 -15.98639 -15.01737 -14.85022 -14.65298 -14.38841 -14.31650 -13.68614 -13.50322 -13.44972 -13.08067 -12.82189 -12.61203 -12.34107 -12.19211 -12.03873 -11.79486 -11.64295 -11.40894 -11.36574 -10.93922 -10.86971 -10.77061 -10.72570 -10.55264 -10.43753 -10.34022 -10.09969 -10.07904 -9.68339 -9.63992 -9.52106 -9.30305 -8.82798 -8.66597 -8.25587 -7.02061 -5.89053 -3.89583 3.37268 3.43993 3.48782 4.45452 4.50962 4.70342 4.84250 4.92898 5.14571 5.23185 5.32501 5.40672 5.42601 5.55215 5.65605 5.68944 5.75955 5.85000 5.85200 5.88181 5.94515 5.96916 6.02130 6.11272 6.14422 6.24489 6.31824 6.39829 6.43639 6.44657 6.46896 6.51014 6.63876 6.68347 6.68739 6.80789 6.93129 7.01558 7.03375 7.08936 7.35764 7.40592 7.44740 7.62169 7.81489 8.00785 8.42393 8.72884 8.78712 9.17010 9.73843 11.17899 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.005091 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.040460 B = 5498.296813 C = 6203.683906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.144 4.144 3 C 0.218 3.782 4 H 0.031 0.969 5 C -0.484 4.484 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.684 5.684 14 C 0.089 3.911 15 H 0.037 0.963 16 C -0.090 4.090 17 C -0.055 4.055 18 C -0.143 4.143 19 C -0.143 4.143 20 C -0.089 4.089 21 C -0.045 4.045 22 C -0.149 4.149 23 C 0.068 3.932 24 N -0.848 5.848 25 C -0.093 4.093 26 H 0.028 0.972 27 H 0.021 0.979 28 H 0.068 0.932 29 H 0.009 0.991 30 H 0.090 0.910 31 H 0.257 0.743 32 H 0.326 0.674 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.046 0.954 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.019 0.981 48 H 0.336 0.664 49 H 0.339 0.661 50 H 0.064 0.936 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 0.390 -17.072 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.183 4.183 3 C 0.110 3.890 4 H 0.049 0.951 5 C -0.523 4.523 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.315 5.315 14 C -0.021 4.021 15 H 0.055 0.945 16 C -0.128 4.128 17 C -0.056 4.056 18 C -0.200 4.200 19 C -0.201 4.201 20 C -0.127 4.127 21 C -0.046 4.046 22 C -0.206 4.206 23 C -0.063 4.063 24 N -0.378 5.378 25 C -0.131 4.131 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.027 0.973 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.144 0.856 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.038 0.962 48 H 0.148 0.852 49 H 0.154 0.846 50 H 0.082 0.918 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.712 1.279 -16.084 16.557 hybrid contribution -0.032 -0.914 -0.223 0.942 sum 3.680 0.365 -16.308 16.722 Atomic orbital electron populations 1.21590 0.97804 0.98531 1.00741 1.22089 0.94904 1.01386 0.99951 1.19190 0.95721 0.88315 0.85802 0.95105 1.21103 1.30080 1.11314 0.89762 0.92173 1.24905 0.95653 0.95204 0.98653 1.69890 1.39285 1.24127 1.20441 0.86620 0.78895 0.80396 0.82215 1.20956 1.21549 1.19982 1.60938 1.03607 1.63270 1.03641 1.21304 0.93660 0.96389 0.90736 0.94521 1.21430 0.94730 0.99321 0.97355 1.20354 0.95403 0.95109 0.94729 1.22045 0.98915 0.98091 1.00975 1.22282 0.98831 0.97520 1.01417 1.21251 0.95844 0.99392 0.96213 1.20348 0.94630 0.95005 0.94647 1.22104 1.00785 0.95628 1.02063 1.22285 0.90461 0.97582 0.95977 1.58744 1.27275 1.09612 1.42210 1.21480 0.96815 1.02125 0.92659 0.95332 0.95993 0.91325 0.97272 0.89181 0.93297 0.85589 0.92087 0.91849 0.93566 0.92619 0.92224 0.92973 0.92621 0.93462 0.93053 0.92691 0.92574 0.93524 0.91582 0.91259 0.96250 0.85245 0.84635 0.91755 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.40 37.16 0.35 -2.47 16 2 C -0.14 -3.41 5.49 -26.73 -0.15 -3.56 16 3 C 0.22 5.38 2.13 -68.86 -0.15 5.23 16 4 H 0.03 0.85 7.24 -51.93 -0.38 0.48 16 5 C -0.48 -13.17 7.24 -34.44 -0.25 -13.42 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.54 5.28 -17.82 -0.09 1.45 16 8 N -0.90 -25.54 11.38 55.43 0.63 -24.91 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -14.48 6.03 -101.11 -0.61 -15.09 16 14 C 0.09 1.58 2.09 -67.79 -0.14 1.44 16 15 H 0.04 0.71 5.21 -52.12 -0.27 0.44 16 16 C -0.09 -1.52 4.02 -27.16 -0.11 -1.63 16 17 C -0.06 -0.74 0.71 -154.58 -0.11 -0.85 16 18 C -0.14 -1.91 8.00 37.23 0.30 -1.62 16 19 C -0.14 -1.74 8.08 37.94 0.31 -1.43 16 20 C -0.09 -1.06 3.48 -28.01 -0.10 -1.15 16 21 C -0.05 -0.55 0.57 -154.57 -0.09 -0.63 16 22 C -0.15 -1.72 7.74 37.23 0.29 -1.43 16 23 C 0.07 0.72 5.42 -3.04 -0.02 0.70 16 24 N -0.85 -8.49 8.86 -9.67 -0.09 -8.57 16 25 C -0.09 -1.39 3.49 -27.16 -0.09 -1.48 16 26 H 0.03 0.56 6.65 -51.93 -0.35 0.22 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 1.64 6.84 -51.93 -0.36 1.29 16 29 H 0.01 0.19 7.47 -51.93 -0.39 -0.19 16 30 H 0.09 2.40 6.23 -51.93 -0.32 2.08 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.33 6.77 6.21 -39.29 -0.24 6.52 16 33 H 0.06 1.07 8.11 -51.76 -0.42 0.65 16 34 H 0.06 1.24 7.51 -51.76 -0.39 0.85 16 35 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.05 0.80 8.11 -51.93 -0.42 0.37 16 37 H 0.06 0.83 4.67 -51.93 -0.24 0.59 16 38 H 0.05 0.61 8.05 -51.93 -0.42 0.20 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 41 H 0.05 0.56 7.93 -51.23 -0.41 0.15 16 42 H 0.05 0.63 7.59 -51.21 -0.39 0.24 16 43 H 0.06 0.62 6.20 -51.93 -0.32 0.30 16 44 H 0.05 0.47 8.07 -51.93 -0.42 0.06 16 45 H 0.07 0.86 4.62 -51.93 -0.24 0.62 16 46 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 47 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 48 H 0.34 2.72 9.08 -39.29 -0.36 2.37 16 49 H 0.34 3.18 6.75 -39.29 -0.27 2.92 16 50 H 0.06 1.02 7.70 -51.75 -0.40 0.62 16 51 H 0.06 0.98 8.10 -51.77 -0.42 0.56 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -27.63 363.52 -9.15 -36.78 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -9.49 Total: 10.61 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -0.05 Total: -20.88 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.06 Total: -48.58 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.63 -9.15 -36.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155397.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.240 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds