Wall clock time and date at job start Tue Mar 31 2020 05:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47088 * 2 1 4 4 H 1.08991 * 109.47292 * 174.78324 * 3 2 1 5 5 C 1.50702 * 109.47278 * 54.77526 * 3 2 1 6 6 H 1.07991 * 120.00317 * 240.00503 * 5 3 2 7 7 C 1.37880 * 119.99580 * 60.00576 * 5 3 2 8 8 N 1.31515 * 119.99815 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99730 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47321 * 90.00403 * 9 7 5 11 11 H 1.48504 * 109.46826 * 209.99618 * 9 7 5 12 12 H 1.48495 * 109.47384 * 329.99589 * 9 7 5 13 13 N 1.46910 * 109.46754 * 294.78145 * 3 2 1 14 14 C 1.47297 * 110.99624 * 273.86959 * 13 3 2 15 15 H 1.08652 * 108.77833 * 33.35216 * 14 13 3 16 16 C 1.52710 * 109.08957 * 272.74272 * 14 13 3 17 17 C 1.52459 * 110.77486 * 179.49681 * 16 14 13 18 18 C 1.53133 * 109.99833 * 287.58350 * 17 16 14 19 19 C 1.54489 * 107.61507 * 170.99676 * 17 16 14 20 20 C 1.51732 * 112.62038 * 52.13609 * 17 16 14 21 21 C 1.51744 * 116.02898 * 316.68576 * 20 17 16 22 22 C 1.53137 * 111.11744 * 279.31969 * 21 20 17 23 23 C 1.54495 * 107.94298 * 161.93080 * 21 20 17 24 24 N 1.46902 * 109.46873 * 178.17047 * 23 21 20 25 25 C 1.52452 * 112.64341 * 43.26896 * 21 20 17 26 26 H 1.08999 * 109.47206 * 65.54302 * 1 2 3 27 27 H 1.09003 * 109.47017 * 185.53649 * 1 2 3 28 28 H 1.08999 * 109.47393 * 305.53600 * 1 2 3 29 29 H 1.08996 * 109.47484 * 239.99740 * 2 1 3 30 30 H 1.08996 * 109.47186 * 119.99498 * 2 1 3 31 31 H 0.97004 * 119.99904 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99808 * 37.82510 * 13 3 2 33 33 H 1.09296 * 109.28562 * 300.15265 * 16 14 13 34 34 H 1.09304 * 109.26557 * 58.85955 * 16 14 13 35 35 H 1.09008 * 109.46990 * 185.40904 * 18 17 16 36 36 H 1.09002 * 109.47312 * 305.40781 * 18 17 16 37 37 H 1.08999 * 109.47274 * 65.41049 * 18 17 16 38 38 H 1.09004 * 109.47140 * 298.18589 * 19 17 16 39 39 H 1.08999 * 109.47347 * 58.19261 * 19 17 16 40 40 H 1.09007 * 109.47001 * 178.18983 * 19 17 16 41 41 H 1.10234 * 108.62494 * 194.02362 * 20 17 16 42 42 H 1.10259 * 108.56224 * 79.21210 * 20 17 16 43 43 H 1.08999 * 109.47242 * 185.43517 * 22 21 20 44 44 H 1.09005 * 109.47336 * 305.43533 * 22 21 20 45 45 H 1.09002 * 109.47050 * 65.43513 * 22 21 20 46 46 H 1.08997 * 109.47302 * 298.16837 * 23 21 20 47 47 H 1.08995 * 109.47210 * 58.17517 * 23 21 20 48 48 H 1.00896 * 111.00195 * 180.02562 * 24 23 21 49 49 H 1.00907 * 111.00208 * 303.95407 * 24 23 21 50 50 H 1.09316 * 109.42161 * 187.43969 * 25 21 20 51 51 H 1.09289 * 109.45261 * 68.54769 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1259 1.4440 0.0934 5 6 1.4348 2.1894 1.1607 6 1 0.8258 3.0631 0.9821 7 6 1.6587 1.7570 2.4506 8 7 2.3999 0.6926 2.6680 9 14 0.9092 2.6830 3.8893 10 1 -0.4297 2.1194 4.1974 11 1 1.7889 2.5468 5.0780 12 1 0.7726 4.1190 3.5366 13 7 1.6558 2.0977 -1.2576 14 6 2.6508 1.8396 -2.3125 15 1 3.0663 0.8464 -2.1661 16 6 3.7501 2.8965 -2.2315 17 6 4.8097 2.6578 -3.3014 18 6 5.6540 1.4330 -2.9383 19 6 5.7532 3.8811 -3.3061 20 6 4.2155 2.5201 -4.6907 21 6 2.9652 1.6671 -4.7987 22 6 3.3157 0.1769 -4.8382 23 6 2.2684 2.0106 -6.1341 24 7 1.0741 1.1703 -6.2936 25 6 1.9703 1.9392 -3.6760 26 1 -0.3633 0.4255 -0.9354 27 1 -0.3633 -1.0229 0.0992 28 1 -0.3634 0.5973 0.8362 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.5572 0.3882 3.5755 32 1 0.7349 1.8070 -1.5501 33 1 3.3095 3.8871 -2.3704 34 1 4.2158 2.8575 -1.2434 35 1 6.4674 1.3266 -3.6561 36 1 6.0669 1.5599 -1.9375 37 1 5.0288 0.5405 -2.9628 38 1 5.1868 4.7759 -3.5641 39 1 6.1948 4.0032 -2.3171 40 1 6.5439 3.7273 -4.0406 41 1 4.9842 2.1047 -5.3628 42 1 3.9874 3.5276 -5.0764 43 1 2.4105 -0.4048 -5.0125 44 1 4.0269 -0.0079 -5.6433 45 1 3.7592 -0.1174 -3.8870 46 1 1.9761 3.0607 -6.1318 47 1 2.9552 1.8264 -6.9602 48 1 0.6005 1.3757 -7.1605 49 1 1.3104 0.1910 -6.2344 50 1 1.1567 1.2109 -3.7268 51 1 1.5497 2.9406 -3.7973 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155397.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:59 Heat of formation + Delta-G solvation = -48.652355 kcal Electronic energy + Delta-G solvation = -24772.368729 eV Core-core repulsion = 21704.257984 eV Total energy + Delta-G solvation = -3068.110745 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06587 -38.05214 -36.72575 -34.74932 -33.08358 -32.33905 -29.87058 -28.65640 -27.78064 -27.46762 -27.04020 -25.41091 -25.03339 -22.36276 -20.97860 -20.20581 -18.83531 -18.02419 -17.25046 -16.73496 -16.24320 -15.92015 -15.75974 -15.42456 -15.03247 -14.82750 -14.73293 -14.47133 -14.22255 -14.14317 -13.76917 -13.53627 -13.34412 -13.05731 -12.91490 -12.74500 -12.58712 -12.49324 -12.45540 -12.43233 -12.11140 -12.06762 -11.84938 -11.70258 -11.59675 -11.47931 -11.37125 -11.09904 -11.02645 -10.75086 -10.66433 -10.39940 -9.42553 -8.80078 -8.02569 -6.10431 1.42427 1.43644 1.53889 2.47101 3.25743 3.51012 3.59630 3.82672 3.94141 4.09124 4.13362 4.24682 4.30954 4.40887 4.53483 4.56155 4.61328 4.65741 4.72087 4.74631 4.77676 4.78819 4.83176 4.85433 4.96438 4.98721 5.03011 5.09725 5.10979 5.13778 5.23528 5.24855 5.28054 5.30656 5.44145 5.46126 5.53255 5.55117 5.61086 5.66108 5.70684 5.72331 5.77193 5.93602 6.36683 6.38822 6.70254 6.79380 6.96835 7.06330 7.57519 9.02672 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.005091 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.040460 B = 5498.296813 C = 6203.683906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.135 4.135 3 C 0.229 3.771 4 H -0.008 1.008 5 C -0.496 4.496 6 H 0.049 0.951 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.689 5.689 14 C 0.093 3.907 15 H 0.021 0.979 16 C -0.083 4.083 17 C -0.052 4.052 18 C -0.141 4.141 19 C -0.140 4.140 20 C -0.088 4.088 21 C -0.043 4.043 22 C -0.146 4.146 23 C 0.075 3.925 24 N -0.859 5.859 25 C -0.079 4.079 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.020 0.980 30 H 0.059 0.941 31 H 0.257 0.743 32 H 0.329 0.671 33 H 0.052 0.948 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.046 0.954 46 H 0.066 0.934 47 H 0.038 0.962 48 H 0.347 0.653 49 H 0.343 0.657 50 H 0.057 0.943 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.441 0.599 -19.459 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.175 4.175 3 C 0.120 3.880 4 H 0.010 0.990 5 C -0.535 4.535 6 H 0.067 0.933 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.776 3.224 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.320 5.320 14 C -0.017 4.017 15 H 0.039 0.961 16 C -0.121 4.121 17 C -0.052 4.052 18 C -0.198 4.198 19 C -0.197 4.197 20 C -0.126 4.126 21 C -0.044 4.044 22 C -0.204 4.204 23 C -0.056 4.056 24 N -0.392 5.392 25 C -0.117 4.117 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.147 0.853 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.057 0.943 48 H 0.161 0.839 49 H 0.158 0.842 50 H 0.076 0.924 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.515 1.493 -18.491 18.881 hybrid contribution 0.045 -0.983 0.522 1.114 sum 3.560 0.510 -17.969 18.325 Atomic orbital electron populations 1.21461 0.95972 0.99466 1.00760 1.21922 0.96424 1.00263 0.98899 1.18867 0.93082 0.89096 0.86961 0.99044 1.21306 1.30026 1.11176 0.91005 0.93274 1.25583 0.96014 0.95931 1.00961 1.70024 1.40156 1.25218 1.20830 0.85689 0.78333 0.79191 0.79208 1.20131 1.21286 1.19807 1.60860 1.04569 1.62925 1.03607 1.21347 0.93219 0.95720 0.91423 0.96108 1.21361 0.95335 0.98563 0.96863 1.20316 0.94505 0.95830 0.94587 1.22030 0.99501 0.97692 1.00612 1.22250 0.99127 0.96929 1.01441 1.21227 0.96222 1.00171 0.95001 1.20311 0.94156 0.95573 0.94367 1.22079 1.01398 0.95109 1.01765 1.22163 0.90858 0.97445 0.95168 1.58709 1.27303 1.09891 1.43251 1.21337 0.97166 1.01360 0.91824 0.93343 0.94069 0.93653 0.96140 0.92279 0.93346 0.85278 0.92923 0.95810 0.90937 0.94659 0.93090 0.92542 0.93967 0.91081 0.90728 0.91741 0.92209 0.91422 0.93554 0.91596 0.94339 0.83919 0.84183 0.92434 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 9.40 71.98 0.68 -4.50 16 2 C -0.14 -6.58 5.49 30.60 0.17 -6.42 16 3 C 0.23 11.79 2.13 44.17 0.09 11.88 16 4 H -0.01 -0.49 7.24 -2.39 -0.02 -0.51 16 5 C -0.50 -27.88 7.24 25.60 0.19 -27.70 16 6 H 0.05 2.82 7.81 -2.92 -0.02 2.79 16 7 C 0.01 0.73 5.28 84.66 0.45 1.17 16 8 N -0.92 -54.01 11.38 21.45 0.24 -53.76 16 9 Si 0.95 45.00 29.54 68.60 2.03 47.03 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 12 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 13 N -0.69 -30.08 6.03 -473.81 -2.86 -32.93 16 14 C 0.09 3.36 2.09 44.65 0.09 3.46 16 15 H 0.02 0.83 5.21 -2.57 -0.01 0.82 16 16 C -0.08 -2.91 4.02 30.32 0.12 -2.79 16 17 C -0.05 -1.35 0.71 -52.23 -0.04 -1.38 16 18 C -0.14 -3.72 8.00 72.03 0.58 -3.14 16 19 C -0.14 -3.21 8.08 72.49 0.59 -2.63 16 20 C -0.09 -1.86 3.48 29.76 0.10 -1.75 16 21 C -0.04 -0.94 0.57 -52.22 -0.03 -0.97 16 22 C -0.15 -3.06 7.74 72.03 0.56 -2.50 16 23 C 0.07 1.33 5.42 86.81 0.47 1.80 16 24 N -0.86 -14.88 8.86 -184.50 -1.64 -16.51 16 25 C -0.08 -2.30 3.49 30.32 0.11 -2.19 16 26 H 0.05 1.88 6.65 -2.39 -0.02 1.86 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.04 2.17 6.84 -2.39 -0.02 2.15 16 29 H 0.02 0.91 7.47 -2.39 -0.02 0.90 16 30 H 0.06 3.26 6.23 -2.39 -0.01 3.24 16 31 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.33 13.77 6.21 -89.69 -0.56 13.22 16 33 H 0.05 1.89 8.11 -2.23 -0.02 1.87 16 34 H 0.02 0.99 7.51 -2.23 -0.02 0.97 16 35 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.03 1.04 8.11 -2.39 -0.02 1.02 16 37 H 0.05 1.43 4.67 -2.39 -0.01 1.41 16 38 H 0.06 1.24 8.05 -2.39 -0.02 1.22 16 39 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.07 1.30 7.93 -1.73 -0.01 1.28 16 42 H 0.06 1.27 7.59 -1.71 -0.01 1.26 16 43 H 0.06 1.20 6.20 -2.39 -0.01 1.18 16 44 H 0.07 1.14 8.07 -2.38 -0.02 1.12 16 45 H 0.05 1.16 4.62 -2.39 -0.01 1.15 16 46 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 47 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.35 4.66 9.08 -89.70 -0.81 3.85 16 49 H 0.34 5.50 6.75 -89.69 -0.61 4.89 16 50 H 0.06 1.76 7.70 -2.22 -0.02 1.74 16 51 H 0.05 1.65 8.10 -2.23 -0.02 1.64 16 Total: -1.00 -61.48 363.52 0.84 -60.64 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -1.05 Total: 33.19 kcal Atomic # 6 Polarization: -41.77 SS G_CDS: 4.12 Total: -37.65 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -4.25 Total: -103.21 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -61.48 0.84 -60.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155397.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.986 kcal (2) G-P(sol) polarization free energy of solvation -61.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds