Wall clock time and date at job start Tue Mar 31 2020 05:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47139 * 2 1 4 4 H 1.09001 * 109.46806 * 305.43026 * 3 2 1 5 5 C 1.50693 * 109.47019 * 185.42749 * 3 2 1 6 6 H 1.07998 * 120.00490 * 240.00167 * 5 3 2 7 7 C 1.37881 * 119.99951 * 60.00282 * 5 3 2 8 8 N 1.31512 * 120.00141 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99918 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47101 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46886 * 120.00010 * 9 7 5 12 12 H 1.48498 * 109.47385 * 239.99998 * 9 7 5 13 13 N 1.46898 * 109.46664 * 65.42976 * 3 2 1 14 14 C 1.46905 * 110.99599 * 203.37150 * 13 3 2 15 15 H 1.08997 * 109.47152 * 326.97208 * 14 13 3 16 16 C 1.53000 * 109.46893 * 86.97386 * 14 13 3 17 17 C 1.53004 * 109.47246 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47341 * 59.99528 * 17 16 14 19 19 C 1.53000 * 109.47246 * 180.02562 * 17 16 14 20 20 C 1.53005 * 109.46838 * 299.99723 * 17 16 14 21 21 C 1.53001 * 109.47049 * 59.99558 * 20 17 16 22 22 C 1.52998 * 109.47199 * 179.97438 * 21 20 17 23 23 C 1.53004 * 109.46789 * 60.00232 * 21 20 17 24 24 N 1.46903 * 109.47239 * 171.76328 * 23 21 20 25 25 C 1.52992 * 109.47378 * 300.00360 * 21 20 17 26 26 H 1.09004 * 109.46896 * 182.19554 * 1 2 3 27 27 H 1.08993 * 109.46715 * 302.19594 * 1 2 3 28 28 H 1.09002 * 109.47075 * 62.19845 * 1 2 3 29 29 H 1.09001 * 109.47044 * 240.00090 * 2 1 3 30 30 H 1.09002 * 109.47023 * 120.00325 * 2 1 3 31 31 H 0.97001 * 120.00005 * 180.02562 * 8 7 5 32 32 H 1.00898 * 111.00456 * 327.32087 * 13 3 2 33 33 H 1.09008 * 109.47149 * 299.99720 * 16 14 13 34 34 H 1.08997 * 109.47367 * 59.99954 * 16 14 13 35 35 H 1.09002 * 109.47220 * 104.49247 * 18 17 16 36 36 H 1.09000 * 109.47299 * 224.50095 * 18 17 16 37 37 H 1.09004 * 109.47098 * 344.49529 * 18 17 16 38 38 H 1.08997 * 109.47367 * 59.99712 * 19 17 16 39 39 H 1.08999 * 109.46800 * 179.97438 * 19 17 16 40 40 H 1.08996 * 109.46952 * 299.99747 * 19 17 16 41 41 H 1.08998 * 109.47523 * 180.02562 * 20 17 16 42 42 H 1.09000 * 109.46847 * 300.00341 * 20 17 16 43 43 H 1.09006 * 109.47050 * 60.00396 * 22 21 20 44 44 H 1.09002 * 109.47381 * 180.02562 * 22 21 20 45 45 H 1.08998 * 109.47652 * 300.00619 * 22 21 20 46 46 H 1.08997 * 109.46980 * 291.76336 * 23 21 20 47 47 H 1.09000 * 109.46938 * 51.76630 * 23 21 20 48 48 H 1.00898 * 111.00379 * 179.97438 * 24 23 21 49 49 H 1.00903 * 111.00128 * 303.95424 * 24 23 21 50 50 H 1.09000 * 109.47476 * 299.99805 * 25 21 20 51 51 H 1.09002 * 109.47041 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5995 1.9836 -0.8374 5 6 3.5410 1.4446 -0.1344 6 1 4.1518 1.8872 0.6385 7 6 4.1346 0.8815 -1.2442 8 7 3.3909 0.3421 -2.1852 9 14 5.9951 0.8847 -1.4111 10 1 6.5973 1.5467 -0.2260 11 1 6.4866 -0.5139 -1.4993 12 1 6.3806 1.6233 -2.6404 13 7 1.6603 2.0960 1.2596 14 6 1.6179 3.5561 1.1031 15 1 2.3761 3.8667 0.3844 16 6 0.2353 3.9750 0.5991 17 6 0.1912 5.4956 0.4355 18 6 1.2555 5.9311 -0.5736 19 6 -1.1915 5.9146 -0.0679 20 6 0.4654 6.1619 1.7853 21 6 1.8479 5.7429 2.2894 22 6 2.1224 6.4096 3.6389 23 6 2.9122 6.1784 1.2802 24 7 4.2478 5.9554 1.8500 25 6 1.8919 4.2224 2.4529 26 1 -0.3633 -1.0270 0.0394 27 1 -0.3632 0.5475 0.8696 28 1 -0.3633 0.4793 -0.9091 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8085 -0.0544 -2.9658 32 1 0.7780 1.7430 1.5985 33 1 0.0401 3.5007 -0.3627 34 1 -0.5229 3.6644 1.3179 35 1 0.7774 6.1812 -1.5208 36 1 1.7832 6.8048 -0.1910 37 1 1.9643 5.1175 -0.7281 38 1 -1.9494 5.6044 0.6514 39 1 -1.2230 6.9979 -0.1839 40 1 -1.3873 5.4399 -1.0293 41 1 0.4336 7.2452 1.6690 42 1 -0.2928 5.8516 2.5043 43 1 1.3641 6.0998 4.3581 44 1 3.1075 6.1115 3.9978 45 1 2.0911 7.4929 3.5221 46 1 2.8055 5.5954 0.3654 47 1 2.7862 7.2370 1.0533 48 1 4.9688 6.2350 1.2019 49 1 4.3490 6.4341 2.7324 50 1 1.1337 3.9121 3.1719 51 1 2.8767 3.9240 2.8125 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155401.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:03 Heat of formation + Delta-G solvation = -0.610218 kcal Electronic energy + Delta-G solvation = -25194.109482 eV Core-core repulsion = 22128.082001 eV Total energy + Delta-G solvation = -3066.027482 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.51310 -36.22256 -35.05608 -32.87881 -31.86815 -31.26027 -28.41418 -28.12889 -26.45400 -25.98714 -25.87010 -23.82498 -22.75397 -20.51655 -19.51209 -18.96429 -17.94437 -16.13771 -16.01839 -15.20079 -15.07549 -14.57723 -14.24437 -13.97745 -13.95224 -13.44626 -13.38608 -12.97295 -12.61230 -12.52343 -12.28903 -12.12520 -11.98566 -11.77694 -11.57162 -11.49915 -11.39955 -11.10970 -10.88100 -10.74757 -10.63088 -10.50242 -10.43085 -10.14479 -10.07985 -9.84729 -9.73716 -9.61673 -9.51781 -9.16745 -8.88021 -8.26164 -8.25577 -7.01679 -5.86857 -3.89449 3.37421 3.45436 3.52988 4.53911 4.75358 4.77849 4.90031 5.05350 5.20767 5.28377 5.38082 5.41536 5.50806 5.70283 5.71663 5.73458 5.79614 5.85084 5.87789 5.91668 5.95798 6.01148 6.08922 6.10651 6.22277 6.23614 6.24331 6.28628 6.34776 6.40291 6.43747 6.47275 6.51548 6.62368 6.66102 6.82460 6.93138 7.06386 7.07952 7.22009 7.31736 7.46148 7.65590 7.71572 7.89058 8.05945 8.48147 8.52703 8.92827 9.21305 9.75383 11.18477 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.015015 B = 0.006509 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.368417 B = 4300.966449 C = 5149.564689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.221 3.779 4 H -0.001 1.001 5 C -0.484 4.484 6 H 0.064 0.936 7 C 0.053 3.947 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.681 5.681 14 C 0.095 3.905 15 H 0.089 0.911 16 C -0.137 4.137 17 C -0.059 4.059 18 C -0.167 4.167 19 C -0.139 4.139 20 C -0.094 4.094 21 C -0.057 4.057 22 C -0.143 4.143 23 C 0.042 3.958 24 N -0.845 5.845 25 C -0.083 4.083 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.041 0.959 29 H 0.098 0.902 30 H 0.039 0.961 31 H 0.256 0.744 32 H 0.313 0.687 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.044 0.956 46 H 0.113 0.887 47 H 0.015 0.985 48 H 0.337 0.663 49 H 0.330 0.670 50 H 0.044 0.956 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.187 12.626 6.559 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.017 0.983 5 C -0.523 4.523 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.719 3.281 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.310 5.310 14 C -0.016 4.016 15 H 0.107 0.893 16 C -0.176 4.176 17 C -0.059 4.059 18 C -0.224 4.224 19 C -0.196 4.196 20 C -0.132 4.132 21 C -0.058 4.058 22 C -0.200 4.200 23 C -0.087 4.087 24 N -0.375 5.375 25 C -0.122 4.122 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.116 0.884 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.131 0.869 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.130 0.870 47 H 0.033 0.967 48 H 0.149 0.851 49 H 0.143 0.857 50 H 0.063 0.937 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.713 11.736 6.656 14.652 hybrid contribution 0.139 1.097 -0.819 1.376 sum -5.574 12.833 5.837 15.160 Atomic orbital electron populations 1.21876 0.99776 0.99331 0.99633 1.21762 0.91088 1.00673 1.02903 1.19118 0.95256 0.89738 0.84571 0.98296 1.21306 0.91378 1.35557 1.04050 0.91799 1.24946 0.97825 0.95901 0.95982 1.69890 1.34418 1.39994 1.09692 0.86550 0.86299 0.77447 0.77798 1.19616 1.21353 1.21462 1.60756 1.34316 1.02537 1.33434 1.21551 0.94487 0.89181 0.96334 0.89346 1.22434 0.99790 0.94189 1.01202 1.20451 0.94832 0.95845 0.94812 1.22810 0.99178 1.02188 0.98200 1.21915 0.96394 1.00469 1.00832 1.21688 0.96431 0.98898 0.96209 1.20545 0.93812 0.97044 0.94368 1.21859 1.01932 0.99195 0.97043 1.23121 0.88304 0.97383 0.99867 1.58760 1.04134 1.66768 1.07843 1.21426 1.02214 0.91175 0.97335 0.94620 0.94591 0.94030 0.88406 0.94189 0.93369 0.86938 0.92217 0.92899 0.93593 0.91305 0.90499 0.93132 0.93189 0.92774 0.92778 0.92203 0.92869 0.91951 0.93698 0.86994 0.96702 0.85132 0.85707 0.93696 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.78 37.16 0.36 -2.57 16 2 C -0.13 -3.00 5.37 -26.73 -0.14 -3.15 16 3 C 0.22 5.46 1.85 -68.87 -0.13 5.33 16 4 H 0.00 -0.01 7.26 -51.93 -0.38 -0.39 16 5 C -0.48 -13.41 8.42 -34.44 -0.29 -13.70 16 6 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.79 11.29 55.43 0.63 -25.17 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 N -0.68 -14.44 6.05 -100.96 -0.61 -15.05 16 14 C 0.09 1.75 1.90 -67.71 -0.13 1.62 16 15 H 0.09 1.87 4.41 -51.93 -0.23 1.65 16 16 C -0.14 -2.20 3.89 -26.73 -0.10 -2.31 16 17 C -0.06 -0.79 0.77 -154.51 -0.12 -0.91 16 18 C -0.17 -2.33 7.33 37.15 0.27 -2.05 16 19 C -0.14 -1.65 8.20 37.16 0.30 -1.35 16 20 C -0.09 -1.16 3.61 -26.73 -0.10 -1.26 16 21 C -0.06 -0.75 0.60 -154.51 -0.09 -0.84 16 22 C -0.14 -1.63 7.92 37.16 0.29 -1.33 16 23 C 0.04 0.58 3.89 -3.82 -0.01 0.56 16 24 N -0.84 -11.39 9.09 -10.37 -0.09 -11.49 16 25 C -0.08 -1.35 4.25 -26.74 -0.11 -1.47 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.64 6.37 -51.93 -0.33 0.31 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.31 6.19 6.19 -39.29 -0.24 5.95 16 33 H 0.06 1.08 7.55 -51.92 -0.39 0.69 16 34 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 35 H 0.05 0.60 7.67 -51.93 -0.40 0.21 16 36 H 0.07 0.86 4.62 -51.93 -0.24 0.62 16 37 H 0.08 1.28 4.67 -51.93 -0.24 1.03 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.72 6.50 -51.93 -0.34 0.38 16 45 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.11 1.75 2.67 -51.93 -0.14 1.61 16 47 H 0.02 0.19 7.02 -51.93 -0.36 -0.18 16 48 H 0.34 4.16 9.08 -39.29 -0.36 3.81 16 49 H 0.33 3.82 6.81 -39.29 -0.27 3.55 16 50 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.08 1.45 7.86 -51.93 -0.41 1.04 16 LS Contribution 358.80 15.07 5.41 5.41 Total: -1.00 -28.21 358.80 -9.03 -37.25 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -9.25 Total: 14.25 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -0.09 Total: -22.04 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.08 Total: -51.71 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.21 -9.03 -37.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155401.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.638 kcal (2) G-P(sol) polarization free energy of solvation -28.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds