Wall clock time and date at job start Tue Mar 31 2020 05:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47023 * 2 1 4 4 C 1.52997 * 109.47030 * 175.00045 * 3 2 1 5 5 C 1.52999 * 109.47203 * 295.18817 * 4 3 2 6 6 N 1.46902 * 109.46939 * 295.00304 * 3 2 1 7 7 C 1.46847 * 110.99623 * 170.20057 * 6 3 2 8 8 C 1.53040 * 109.52394 * 185.83537 * 7 6 3 9 9 C 1.53118 * 109.27759 * 300.82203 * 8 7 6 10 10 N 1.46900 * 109.51881 * 177.55542 * 9 8 7 11 11 C 1.46901 * 110.99905 * 157.67215 * 10 9 8 12 12 H 1.09006 * 109.47140 * 32.88278 * 11 10 9 13 13 C 1.50700 * 109.47548 * 152.88046 * 11 10 9 14 14 H 1.08000 * 119.99500 * 0.02562 * 13 11 10 15 15 C 1.37877 * 120.00200 * 179.97438 * 13 11 10 16 16 N 1.31507 * 119.99951 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99856 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46774 * 90.00344 * 17 15 13 19 19 H 1.48494 * 109.47070 * 210.00252 * 17 15 13 20 20 H 1.48500 * 109.47410 * 330.00699 * 17 15 13 21 21 C 1.52997 * 109.47424 * 272.88604 * 11 10 9 22 22 C 1.53005 * 109.46873 * 294.41069 * 21 11 10 23 23 C 1.53124 * 109.21162 * 57.62205 * 9 8 7 24 24 C 1.46852 * 110.99914 * 294.40803 * 6 3 2 25 25 H 1.08998 * 109.47469 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47371 * 300.00000 * 1 2 3 27 27 H 1.09001 * 109.47531 * 59.99800 * 1 2 3 28 28 H 1.09002 * 109.46896 * 240.00606 * 2 1 3 29 29 H 1.08994 * 109.47226 * 120.00452 * 2 1 3 30 30 H 1.09003 * 109.46836 * 54.99819 * 3 2 1 31 31 H 1.08999 * 109.46828 * 55.18556 * 4 3 2 32 32 H 1.08999 * 109.46995 * 175.18727 * 4 3 2 33 33 H 1.09000 * 109.46724 * 305.84097 * 5 4 3 34 34 H 1.08997 * 109.47238 * 65.83407 * 5 4 3 35 35 H 1.08995 * 109.47055 * 185.84048 * 5 4 3 36 36 H 1.08996 * 109.46659 * 65.82192 * 7 6 3 37 37 H 1.09004 * 109.46360 * 305.85250 * 7 6 3 38 38 H 1.08993 * 109.50697 * 180.87789 * 8 7 6 39 39 H 1.09001 * 109.49978 * 60.76475 * 8 7 6 40 40 H 1.08997 * 109.52127 * 297.68221 * 9 8 7 41 41 H 1.00896 * 111.00462 * 33.71806 * 10 9 8 42 42 H 0.97007 * 120.00432 * 179.97438 * 16 15 13 43 43 H 1.09005 * 109.47173 * 54.40906 * 21 11 10 44 44 H 1.08996 * 109.47812 * 174.41155 * 21 11 10 45 45 H 1.09004 * 109.46963 * 57.91552 * 22 21 11 46 46 H 1.08998 * 109.46961 * 177.91583 * 22 21 11 47 47 H 1.09000 * 109.47067 * 297.91626 * 22 21 11 48 48 H 1.09002 * 109.50142 * 62.31756 * 23 9 8 49 49 H 1.09004 * 109.49775 * 182.43706 * 23 9 8 50 50 H 1.09005 * 109.45838 * 294.17652 * 24 6 3 51 51 H 1.08998 * 109.45932 * 54.14720 * 24 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5648 1.4444 0.1257 5 6 3.9651 0.8693 1.4858 6 7 1.6513 2.0993 -1.2552 7 6 1.9166 3.5425 -1.1981 8 6 1.3682 4.2137 -2.4594 9 6 2.0400 3.6006 -3.6912 10 7 1.4752 4.1999 -4.9076 11 6 2.4010 4.0641 -6.0401 12 1 2.9605 3.1337 -5.9425 13 6 1.6197 4.0474 -7.3286 14 1 0.5430 4.1299 -7.3082 15 6 2.2793 3.9279 -8.5334 16 7 3.5904 3.8279 -8.5581 17 14 1.3108 3.9080 -10.1306 18 1 1.1590 5.2965 -10.6347 19 1 2.0345 3.0919 -11.1382 20 1 -0.0311 3.3198 -9.8885 21 6 3.3734 5.2453 -6.0485 22 6 2.6029 6.5380 -6.3248 23 6 1.7906 2.0898 -3.7016 24 6 2.3255 1.4805 -2.4037 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6053 1.9816 0.8418 31 1 3.9955 0.8338 -0.6679 32 1 3.9352 2.4659 0.0399 33 1 3.4515 1.4158 2.2767 34 1 3.6861 -0.1834 1.5315 35 1 5.0427 0.9657 1.6181 36 1 2.9915 3.7119 -1.1347 37 1 1.4299 3.9668 -0.3199 38 1 1.5791 5.2824 -2.4239 39 1 0.2911 4.0565 -2.5162 40 1 3.1124 3.7925 -3.6546 41 1 1.2306 5.1667 -4.7545 42 1 4.0545 3.7435 -9.4057 43 1 3.8669 5.3165 -5.0792 44 1 4.1213 5.0948 -6.8269 45 1 1.8304 6.6696 -5.5671 46 1 3.2897 7.3839 -6.2941 47 1 2.1398 6.4815 -7.3099 48 1 0.7203 1.8983 -3.7786 49 1 2.3032 1.6423 -4.5532 50 1 3.3985 1.6596 -2.3346 51 1 2.1356 0.4071 -2.4011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159755.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:28 Heat of formation + Delta-G solvation = -20.780492 kcal Electronic energy + Delta-G solvation = -23977.074827 eV Core-core repulsion = 20910.172697 eV Total energy + Delta-G solvation = -3066.902130 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.64634 -37.06074 -34.99575 -32.50476 -31.85354 -31.04433 -30.53974 -28.88237 -26.31124 -25.19462 -23.41581 -23.16017 -22.86713 -22.18818 -20.11865 -19.15888 -18.63736 -16.47443 -15.93489 -14.99676 -14.91713 -14.70100 -14.56931 -14.48439 -13.98722 -13.86305 -13.60974 -12.97063 -12.83676 -12.71317 -12.32351 -12.25918 -12.22569 -11.89333 -11.80619 -11.62994 -11.44386 -11.19575 -10.94021 -10.88721 -10.86886 -10.70585 -10.64003 -10.50303 -10.39161 -10.23239 -9.95593 -9.79269 -9.62325 -9.42125 -8.88964 -8.29614 -8.07945 -7.12879 -5.92847 -3.93737 3.35014 3.41902 3.46728 3.98796 4.48193 4.62572 4.78244 5.02669 5.06960 5.12832 5.18534 5.27657 5.28695 5.38839 5.40388 5.50540 5.53758 5.65900 5.69003 5.72275 5.77445 5.80273 5.90454 5.98759 6.00745 6.02860 6.09011 6.12699 6.22182 6.28490 6.35997 6.38452 6.39629 6.44047 6.50810 6.60762 6.69719 6.92104 6.94806 7.28260 7.29208 7.33921 7.37171 7.54032 7.75309 7.96164 8.36096 8.64585 8.70804 9.12574 9.69906 11.14217 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.025048 B = 0.003750 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.596754 B = 7464.231565 C = 7781.155465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C 0.085 3.915 4 C -0.160 4.160 5 C -0.147 4.147 6 N -0.526 5.526 7 C 0.061 3.939 8 C -0.115 4.115 9 C 0.090 3.910 10 N -0.680 5.680 11 C 0.216 3.784 12 H 0.032 0.968 13 C -0.485 4.485 14 H 0.061 0.939 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.891 3.109 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.274 1.274 21 C -0.144 4.144 22 C -0.126 4.126 23 C -0.100 4.100 24 C 0.053 3.947 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.030 0.970 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.026 0.974 41 H 0.325 0.675 42 H 0.258 0.742 43 H 0.008 0.992 44 H 0.091 0.909 45 H 0.030 0.970 46 H 0.020 0.980 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.030 0.970 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.079 -4.034 18.164 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.024 4.024 4 C -0.199 4.199 5 C -0.205 4.205 6 N -0.249 5.249 7 C -0.068 4.068 8 C -0.154 4.154 9 C -0.020 4.020 10 N -0.311 5.311 11 C 0.108 3.892 12 H 0.050 0.950 13 C -0.524 4.524 14 H 0.079 0.921 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.720 3.280 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.199 1.199 21 C -0.184 4.184 22 C -0.184 4.184 23 C -0.139 4.139 24 C -0.075 4.075 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.044 0.956 41 H 0.144 0.856 42 H 0.068 0.932 43 H 0.027 0.973 44 H 0.109 0.891 45 H 0.049 0.951 46 H 0.040 0.960 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.086 0.914 50 H 0.048 0.952 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.824 -4.675 17.778 18.472 hybrid contribution 1.323 0.845 -0.613 1.685 sum -0.501 -3.830 17.165 17.594 Atomic orbital electron populations 1.21655 0.95254 1.00639 1.02556 1.21631 0.96780 0.95370 1.01642 1.21805 0.92441 0.95583 0.92582 1.22238 0.98031 1.01463 0.98190 1.21743 1.00851 1.01007 0.96896 1.62150 1.57943 1.02710 1.02113 1.22029 0.98274 0.88019 0.98467 1.21743 1.01766 0.98233 0.93613 1.21406 0.95659 0.94785 0.90197 1.60850 1.45336 1.21318 1.03580 1.19206 0.88748 0.93309 0.87904 0.95019 1.21093 0.93617 1.47984 0.89675 0.92086 1.24909 0.94822 0.95809 0.98887 1.69884 1.06835 1.51364 1.25701 0.86601 0.80170 0.77786 0.83474 1.20943 1.21503 1.19911 1.22102 1.01038 0.96725 0.98539 1.21555 0.98449 0.96434 1.01946 1.21553 1.02269 0.95114 0.94951 1.22195 0.95694 0.98794 0.90768 0.93716 0.93465 0.91191 0.91818 0.91979 0.90446 0.91565 0.92012 0.92868 0.92508 0.93072 0.95198 0.91375 0.92353 0.90547 0.95598 0.85624 0.93237 0.97346 0.89068 0.95114 0.96045 0.91595 0.90870 0.91416 0.95155 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.80 37.16 0.36 -1.06 16 2 C -0.12 -1.13 5.18 -26.73 -0.14 -1.27 16 3 C 0.08 0.88 1.78 -67.71 -0.12 0.76 16 4 C -0.16 -1.61 4.58 -26.73 -0.12 -1.73 16 5 C -0.15 -1.22 9.52 37.16 0.35 -0.86 16 6 N -0.53 -6.61 4.06 -226.68 -0.92 -7.53 16 7 C 0.06 0.77 5.13 -3.83 -0.02 0.75 16 8 C -0.12 -1.70 5.39 -26.65 -0.14 -1.84 16 9 C 0.09 1.61 2.37 -67.59 -0.16 1.45 16 10 N -0.68 -14.26 6.04 -100.82 -0.61 -14.87 16 11 C 0.22 5.31 2.13 -68.87 -0.15 5.16 16 12 H 0.03 0.87 6.96 -51.93 -0.36 0.51 16 13 C -0.48 -13.12 7.37 -34.44 -0.25 -13.38 16 14 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 15 C 0.06 1.53 5.24 -17.82 -0.09 1.44 16 16 N -0.90 -25.43 11.38 55.43 0.63 -24.79 16 17 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 21 C -0.14 -3.41 5.49 -26.73 -0.15 -3.55 16 22 C -0.13 -2.72 9.39 37.16 0.35 -2.37 16 23 C -0.10 -1.72 5.54 -26.65 -0.15 -1.87 16 24 C 0.05 0.75 4.56 -3.83 -0.02 0.73 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 28 H 0.06 0.67 6.21 -51.93 -0.32 0.34 16 29 H 0.06 0.53 6.46 -51.93 -0.34 0.19 16 30 H 0.08 0.79 7.99 -51.93 -0.41 0.38 16 31 H 0.07 0.72 6.76 -51.93 -0.35 0.37 16 32 H 0.06 0.67 6.61 -51.93 -0.34 0.32 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.44 6.74 -51.93 -0.35 0.09 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.03 0.39 6.77 -51.93 -0.35 0.04 16 37 H 0.07 0.78 8.02 -51.93 -0.42 0.36 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.03 0.51 7.26 -51.93 -0.38 0.13 16 41 H 0.33 6.57 6.21 -39.29 -0.24 6.32 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.01 0.18 7.51 -51.93 -0.39 -0.21 16 44 H 0.09 2.42 6.24 -51.93 -0.32 2.09 16 45 H 0.03 0.60 6.38 -51.93 -0.33 0.27 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 1.56 7.09 -51.93 -0.37 1.19 16 48 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.07 1.30 7.32 -51.93 -0.38 0.92 16 50 H 0.03 0.44 6.69 -51.93 -0.35 0.09 16 51 H 0.07 0.96 6.11 -51.93 -0.32 0.64 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -27.04 368.18 -10.47 -37.51 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -9.66 Total: 5.33 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -0.44 Total: -17.64 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.90 Total: -47.19 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.04 -10.47 -37.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159755.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.731 kcal (2) G-P(sol) polarization free energy of solvation -27.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds