Wall clock time and date at job start Tue Mar 31 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 C 1.52994 * 109.47435 * 174.99831 * 3 2 1 5 5 C 1.53002 * 109.47020 * 294.13477 * 4 3 2 6 6 N 1.46900 * 109.46909 * 294.99939 * 3 2 1 7 7 C 1.46851 * 111.00227 * 169.40038 * 6 3 2 8 8 C 1.53033 * 109.52580 * 185.83793 * 7 6 3 9 9 C 1.53122 * 109.27578 * 300.82300 * 8 7 6 10 10 N 1.46907 * 109.51842 * 177.55773 * 9 8 7 11 11 C 1.46901 * 110.99528 * 153.29437 * 10 9 8 12 12 H 1.09000 * 109.47196 * 37.04554 * 11 10 9 13 13 C 1.50699 * 109.47653 * 277.03893 * 11 10 9 14 14 H 1.08006 * 119.99518 * 0.02562 * 13 11 10 15 15 C 1.37870 * 120.00398 * 179.97438 * 13 11 10 16 16 N 1.31524 * 119.99953 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00216 * 180.02562 * 15 13 11 18 18 H 1.48490 * 109.46975 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46856 * 120.00297 * 17 15 13 20 20 H 1.48496 * 109.47244 * 240.00334 * 17 15 13 21 21 C 1.53006 * 109.46554 * 157.04032 * 11 10 9 22 22 C 1.52994 * 109.47669 * 295.94328 * 21 11 10 23 23 C 1.53112 * 109.16413 * 57.65695 * 9 8 7 24 24 C 1.46844 * 110.99975 * 293.61173 * 6 3 2 25 25 H 1.08995 * 109.46793 * 60.00467 * 1 2 3 26 26 H 1.08997 * 109.46873 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47372 * 300.00526 * 1 2 3 28 28 H 1.08993 * 109.47471 * 239.99994 * 2 1 3 29 29 H 1.09002 * 109.47143 * 119.99381 * 2 1 3 30 30 H 1.09004 * 109.46937 * 54.99599 * 3 2 1 31 31 H 1.08996 * 109.47001 * 54.13680 * 4 3 2 32 32 H 1.09003 * 109.47326 * 174.13783 * 4 3 2 33 33 H 1.08991 * 109.47417 * 305.91724 * 5 4 3 34 34 H 1.09005 * 109.46998 * 65.91663 * 5 4 3 35 35 H 1.09000 * 109.47069 * 185.91038 * 5 4 3 36 36 H 1.09007 * 109.45768 * 65.82045 * 7 6 3 37 37 H 1.08999 * 109.46281 * 305.85644 * 7 6 3 38 38 H 1.09000 * 109.50548 * 180.88441 * 8 7 6 39 39 H 1.09001 * 109.50175 * 60.76285 * 8 7 6 40 40 H 1.08998 * 109.52189 * 297.68387 * 9 8 7 41 41 H 1.00903 * 110.99850 * 29.34872 * 10 9 8 42 42 H 0.96994 * 119.99829 * 179.97438 * 16 15 13 43 43 H 1.09009 * 109.46981 * 175.94515 * 21 11 10 44 44 H 1.08997 * 109.46889 * 55.95159 * 21 11 10 45 45 H 1.09007 * 109.46838 * 55.35592 * 22 21 11 46 46 H 1.09006 * 109.47126 * 295.36002 * 22 21 11 47 47 H 1.08989 * 109.47613 * 175.35711 * 22 21 11 48 48 H 1.09005 * 109.50344 * 62.27886 * 23 9 8 49 49 H 1.08999 * 109.50938 * 182.40025 * 23 9 8 50 50 H 1.09000 * 109.46497 * 294.17764 * 24 6 3 51 51 H 1.09006 * 109.45997 * 54.14754 * 24 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5648 1.4444 0.1258 5 6 3.9642 0.8937 1.4962 6 7 1.6514 2.0992 -1.2553 7 6 1.8992 3.5453 -1.1914 8 6 1.3507 4.2145 -2.4536 9 6 2.0375 3.6138 -3.6833 10 7 1.4732 4.2108 -4.9012 11 6 2.4469 4.1833 -6.0008 12 1 3.0219 3.2584 -5.9539 13 6 3.3788 5.3610 -5.8764 14 1 3.2598 6.0599 -5.0616 15 6 4.3838 5.5458 -6.8019 16 7 4.5289 4.6943 -7.7938 17 14 5.5393 7.0053 -6.6472 18 1 5.1675 7.8066 -5.4537 19 1 6.9347 6.5185 -6.5011 20 1 5.4348 7.8505 -7.8637 21 6 1.7077 4.2569 -7.3384 22 6 0.8378 3.0101 -7.5098 23 6 1.8047 2.1006 -3.7001 24 6 2.3401 1.4927 -2.4016 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6054 1.9815 0.8418 31 1 3.9946 0.8188 -0.6565 32 1 3.9368 2.4636 0.0213 33 1 3.4504 1.4544 2.2769 34 1 3.6849 -0.1580 1.5606 35 1 5.0418 0.9921 1.6274 36 1 2.9717 3.7271 -1.1206 37 1 1.4020 3.9606 -0.3148 38 1 1.5487 5.2855 -2.4130 39 1 0.2759 4.0446 -2.5177 40 1 3.1072 3.8184 -3.6393 41 1 1.1509 5.1510 -4.7272 42 1 5.2357 4.8245 -8.4452 43 1 2.4320 4.3091 -8.1514 44 1 1.0768 5.1455 -7.3564 45 1 0.1693 2.9131 -6.6543 46 1 1.4753 2.1283 -7.5746 47 1 0.2490 3.1005 -8.4225 48 1 0.7370 1.8976 -3.7838 49 1 2.3270 1.6614 -4.5500 50 1 3.4104 1.6841 -2.3253 51 1 2.1629 0.4171 -2.4041 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159756.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:30 Heat of formation + Delta-G solvation = -26.382740 kcal Electronic energy + Delta-G solvation = -24040.527543 eV Core-core repulsion = 20973.382481 eV Total energy + Delta-G solvation = -3067.145062 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.57818 -36.85626 -34.82923 -32.43114 -31.82896 -31.28084 -30.49282 -29.14429 -26.34030 -25.17052 -23.18343 -23.04892 -22.76606 -21.83536 -19.95477 -19.33340 -18.62338 -16.59106 -16.26517 -14.99107 -14.82435 -14.62599 -14.49255 -14.38933 -13.91381 -13.75799 -13.59476 -13.09295 -12.80258 -12.49890 -12.48819 -12.21475 -12.01552 -11.80616 -11.57865 -11.47079 -11.30236 -11.17703 -11.16159 -11.05654 -10.86242 -10.70289 -10.63909 -10.57901 -10.35215 -10.11021 -10.08519 -9.74407 -9.51956 -9.35928 -8.96458 -8.35500 -8.03518 -7.19252 -5.97847 -4.10878 3.25281 3.34012 3.36929 4.03627 4.39920 4.65941 4.82632 5.07071 5.11565 5.17327 5.22889 5.28543 5.31605 5.33969 5.43321 5.55606 5.60303 5.69917 5.74888 5.76379 5.83310 5.85087 5.98405 6.00922 6.03904 6.07788 6.18877 6.26489 6.27171 6.32100 6.39421 6.42395 6.48774 6.56649 6.57993 6.73639 6.77989 6.99207 7.17550 7.23098 7.33274 7.34172 7.50269 7.64555 7.80790 8.13283 8.21495 8.39183 8.72952 9.03541 9.56809 11.01715 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018968 B = 0.004344 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.837039 B = 6444.274566 C = 7258.613578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.085 3.915 4 C -0.160 4.160 5 C -0.147 4.147 6 N -0.526 5.526 7 C 0.060 3.940 8 C -0.116 4.116 9 C 0.094 3.906 10 N -0.684 5.684 11 C 0.216 3.784 12 H 0.032 0.968 13 C -0.543 4.543 14 H 0.052 0.948 15 C 0.067 3.933 16 N -0.885 5.885 17 Si 0.886 3.114 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.283 1.283 21 C -0.106 4.106 22 C -0.138 4.138 23 C -0.099 4.099 24 C 0.054 3.946 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.032 0.968 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.326 0.674 42 H 0.260 0.740 43 H 0.088 0.912 44 H 0.029 0.971 45 H 0.051 0.949 46 H 0.034 0.966 47 H 0.023 0.977 48 H 0.068 0.932 49 H 0.063 0.937 50 H 0.032 0.968 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 -7.606 15.056 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.024 4.024 4 C -0.199 4.199 5 C -0.205 4.205 6 N -0.249 5.249 7 C -0.068 4.068 8 C -0.154 4.154 9 C -0.017 4.017 10 N -0.313 5.313 11 C 0.108 3.892 12 H 0.050 0.950 13 C -0.582 4.582 14 H 0.070 0.930 15 C -0.135 4.135 16 N -0.523 5.523 17 Si 0.714 3.286 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.145 4.145 22 C -0.195 4.195 23 C -0.137 4.137 24 C -0.075 4.075 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.143 0.857 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.042 0.958 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.050 0.950 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.599 -8.288 14.603 17.700 hybrid contribution 2.401 1.722 0.365 2.977 sum -3.198 -6.566 14.968 16.655 Atomic orbital electron populations 1.21650 0.95312 1.00562 1.02530 1.21619 0.96712 0.95438 1.01585 1.21798 0.92479 0.95515 0.92623 1.22239 0.97985 1.01648 0.98058 1.21742 1.00881 1.00990 0.96863 1.62160 1.57634 1.02987 1.02148 1.22036 0.98548 0.87775 0.98480 1.21764 1.01236 0.98577 0.93804 1.21322 0.97016 0.93826 0.89505 1.60917 1.40227 1.24576 1.05616 1.19151 0.87595 0.95912 0.86588 0.95018 1.21924 1.14356 1.10999 1.10910 0.92983 1.24927 0.97279 0.96068 0.95244 1.69893 1.32382 1.35936 1.14127 0.86640 0.80928 0.83041 0.77979 1.19991 1.21115 1.20952 1.21488 0.97575 0.94167 1.01229 1.21708 0.99410 0.99368 0.99017 1.21543 1.01618 0.95677 0.94910 1.22175 0.95805 0.98645 0.90827 0.91232 0.93769 0.93472 0.91870 0.92028 0.90489 0.91572 0.91910 0.92889 0.92578 0.93065 0.95025 0.91497 0.92172 0.90968 0.93951 0.85735 0.93008 0.89342 0.95245 0.92972 0.94668 0.95801 0.91306 0.91884 0.94970 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.80 37.16 0.36 -1.05 16 2 C -0.12 -1.14 5.21 -26.73 -0.14 -1.28 16 3 C 0.08 0.91 1.76 -67.72 -0.12 0.80 16 4 C -0.16 -1.71 4.53 -26.73 -0.12 -1.83 16 5 C -0.15 -1.29 9.54 37.16 0.35 -0.94 16 6 N -0.53 -6.78 4.05 -226.68 -0.92 -7.69 16 7 C 0.06 0.81 5.15 -3.83 -0.02 0.79 16 8 C -0.12 -1.78 5.34 -26.65 -0.14 -1.92 16 9 C 0.09 1.73 2.36 -67.59 -0.16 1.57 16 10 N -0.68 -14.13 5.39 -100.82 -0.54 -14.67 16 11 C 0.22 5.28 1.81 -68.86 -0.12 5.15 16 12 H 0.03 0.87 7.30 -51.93 -0.38 0.49 16 13 C -0.54 -14.55 8.17 -34.44 -0.28 -14.83 16 14 H 0.05 1.40 7.77 -52.48 -0.41 0.99 16 15 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 16 N -0.88 -25.01 11.30 55.43 0.63 -24.38 16 17 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.11 -2.55 5.44 -26.73 -0.15 -2.69 16 22 C -0.14 -2.86 9.85 37.15 0.37 -2.49 16 23 C -0.10 -1.67 5.60 -26.65 -0.15 -1.81 16 24 C 0.05 0.76 4.54 -3.83 -0.02 0.74 16 25 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.66 6.24 -51.93 -0.32 0.34 16 29 H 0.06 0.54 6.51 -51.93 -0.34 0.20 16 30 H 0.08 0.82 7.98 -51.93 -0.41 0.41 16 31 H 0.07 0.75 6.82 -51.93 -0.35 0.40 16 32 H 0.06 0.74 6.61 -51.93 -0.34 0.39 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.45 6.77 -51.93 -0.35 0.10 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.03 0.45 6.78 -51.92 -0.35 0.10 16 37 H 0.07 0.81 8.01 -51.93 -0.42 0.39 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.04 0.91 7.55 -51.93 -0.39 0.52 16 41 H 0.33 6.73 8.08 -39.29 -0.32 6.41 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.09 2.38 5.97 -51.92 -0.31 2.07 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.05 1.05 7.60 -51.92 -0.39 0.65 16 46 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.02 0.44 8.14 -51.94 -0.42 0.02 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 49 H 0.06 1.17 7.59 -51.93 -0.39 0.77 16 50 H 0.03 0.48 6.71 -51.93 -0.35 0.14 16 51 H 0.07 0.93 6.15 -51.93 -0.32 0.61 16 LS Contribution 373.91 15.07 5.63 5.63 Total: -1.00 -26.70 373.91 -10.57 -37.28 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -9.92 Total: 5.76 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -0.43 Total: -18.06 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -0.84 Total: -46.75 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -26.70 -10.57 -37.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159756.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.893 kcal (2) G-P(sol) polarization free energy of solvation -26.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds