Wall clock time and date at job start Tue Mar 31 2020 05:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47420 * 2 1 4 4 H 1.08997 * 109.47012 * 175.86770 * 3 2 1 5 5 C 1.50696 * 109.47120 * 55.86249 * 3 2 1 6 6 H 1.07999 * 120.00465 * 240.00074 * 5 3 2 7 7 C 1.37876 * 120.00055 * 60.00321 * 5 3 2 8 8 N 1.31517 * 120.00085 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00272 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47179 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47375 * 120.00017 * 9 7 5 12 12 H 1.48507 * 109.47093 * 240.00117 * 9 7 5 13 13 N 1.46899 * 109.47008 * 295.86671 * 3 2 1 14 14 C 1.46906 * 111.00016 * 273.54440 * 13 3 2 15 15 C 1.53121 * 109.51764 * 276.37890 * 14 13 3 16 16 C 1.53052 * 109.27423 * 182.50247 * 15 14 13 17 17 N 1.46850 * 109.57339 * 59.08291 * 16 15 14 18 18 C 1.46897 * 110.99836 * 174.19632 * 17 16 15 19 19 C 1.53004 * 109.46957 * 304.10670 * 18 17 16 20 20 C 1.53000 * 109.46722 * 84.58774 * 19 18 17 21 21 C 1.52997 * 109.47444 * 204.58847 * 19 18 17 22 22 C 1.53000 * 109.47310 * 324.59368 * 19 18 17 23 23 C 1.46849 * 111.19749 * 298.29456 * 17 16 15 24 24 C 1.53032 * 109.52679 * 61.74003 * 23 17 16 25 25 H 1.08998 * 109.47208 * 298.55690 * 1 2 3 26 26 H 1.09003 * 109.47468 * 58.55338 * 1 2 3 27 27 H 1.09001 * 109.47378 * 178.55261 * 1 2 3 28 28 H 1.09003 * 109.46968 * 239.99451 * 2 1 3 29 29 H 1.09003 * 109.47155 * 120.00036 * 2 1 3 30 30 H 0.96990 * 120.00459 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99995 * 37.49307 * 13 3 2 32 32 H 1.08998 * 109.52350 * 36.50534 * 14 13 3 33 33 H 1.09002 * 109.50579 * 302.37890 * 15 14 13 34 34 H 1.08996 * 109.50781 * 62.49825 * 15 14 13 35 35 H 1.08996 * 109.40504 * 299.07287 * 16 15 14 36 36 H 1.08996 * 109.46125 * 179.13233 * 16 15 14 37 37 H 1.08995 * 109.46991 * 64.10920 * 18 17 16 38 38 H 1.09002 * 109.46694 * 184.11573 * 18 17 16 39 39 H 1.08999 * 109.47206 * 75.31123 * 20 19 18 40 40 H 1.09003 * 109.47308 * 195.30978 * 20 19 18 41 41 H 1.09000 * 109.47664 * 315.30945 * 20 19 18 42 42 H 1.09002 * 109.47080 * 60.00107 * 21 19 18 43 43 H 1.08998 * 109.47397 * 180.02562 * 21 19 18 44 44 H 1.09010 * 109.46832 * 300.00289 * 21 19 18 45 45 H 1.08994 * 109.47457 * 59.99710 * 22 19 18 46 46 H 1.09001 * 109.47326 * 179.97438 * 22 19 18 47 47 H 1.09002 * 109.46711 * 299.99585 * 22 19 18 48 48 H 1.09001 * 109.45732 * 301.72497 * 23 17 16 49 49 H 1.09003 * 109.46005 * 181.76040 * 23 17 16 50 50 H 1.08997 * 109.50535 * 180.87726 * 24 23 17 51 51 H 1.09004 * 109.49984 * 60.76344 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1275 1.4432 0.0741 5 6 1.4558 2.1818 1.1760 6 1 0.8438 3.0568 1.0139 7 6 1.7025 1.7413 2.4589 8 7 2.4482 0.6762 2.6565 9 14 0.9790 2.6582 3.9167 10 1 0.1852 3.8149 3.4295 11 1 0.0999 1.7444 4.6895 12 1 2.0771 3.1448 4.7901 13 7 1.6336 2.1055 -1.2462 14 6 2.6109 1.8612 -2.3155 15 6 3.7611 2.8649 -2.1963 16 6 4.7440 2.6461 -3.3489 17 7 4.0471 2.8210 -4.6296 18 6 4.9890 2.7539 -5.7549 19 6 6.0938 3.7939 -5.5578 20 6 7.1883 3.2114 -4.6614 21 6 6.6916 4.1667 -6.9159 22 6 5.5063 5.0435 -4.8988 23 6 2.9691 1.8362 -4.7863 24 6 1.9325 2.0318 -3.6775 25 1 -0.3633 0.4912 0.9026 26 1 -0.3634 0.5361 -0.8767 27 1 -0.3634 -1.0273 -0.0260 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.6222 0.3665 3.5590 31 1 0.7097 1.8126 -1.5270 32 1 3.0014 0.8474 -2.2274 33 1 3.3654 3.8794 -2.2443 34 1 4.2748 2.7187 -1.2461 35 1 5.1505 1.6364 -3.2915 36 1 5.5563 3.3693 -3.2757 37 1 5.4307 1.7586 -5.8001 38 1 4.4589 2.9589 -6.6850 39 1 7.7862 2.5012 -5.2326 40 1 7.8280 4.0163 -4.2993 41 1 6.7307 2.7017 -3.8135 42 1 5.9118 4.5816 -7.5546 43 1 7.4789 4.9072 -6.7755 44 1 7.1101 3.2763 -7.3854 45 1 5.0805 4.7780 -3.9313 46 1 6.2935 5.7842 -4.7580 47 1 4.7265 5.4585 -5.5375 48 1 3.3840 0.8303 -4.7222 49 1 2.4923 1.9710 -5.7572 50 1 1.1405 1.2907 -3.7849 51 1 1.5072 3.0328 -3.7495 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:32 Heat of formation + Delta-G solvation = -1.086174 kcal Electronic energy + Delta-G solvation = -24082.362962 eV Core-core repulsion = 21016.314842 eV Total energy + Delta-G solvation = -3066.048121 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.79920 -37.35231 -35.53154 -32.94789 -31.27334 -30.75491 -29.18284 -27.48165 -27.20361 -26.42100 -25.04848 -23.37109 -22.64648 -21.79896 -19.48481 -18.97387 -18.87278 -16.30913 -15.78989 -15.18531 -15.02542 -14.88198 -14.64081 -14.06631 -13.94977 -13.69941 -13.52424 -13.09463 -12.85656 -12.58468 -12.45813 -12.29250 -12.11939 -11.82516 -11.77063 -11.58526 -11.47450 -11.07810 -10.94686 -10.83387 -10.78585 -10.75585 -10.60654 -10.51909 -10.49340 -10.20002 -9.82610 -9.69431 -9.60434 -9.42818 -8.88132 -8.30050 -8.16366 -7.13091 -5.93361 -3.94407 3.33810 3.42085 3.47414 3.99337 4.47894 4.65381 4.75531 4.90017 5.07951 5.15172 5.22999 5.38311 5.38555 5.44524 5.47617 5.51428 5.59907 5.62918 5.69469 5.73010 5.77362 5.86560 5.88267 5.94304 5.98484 6.06876 6.07421 6.16921 6.21536 6.34604 6.36035 6.37664 6.40119 6.44547 6.57268 6.60288 6.68359 6.91086 6.93999 7.26076 7.26725 7.33089 7.36150 7.52908 7.75584 7.95921 8.35863 8.64145 8.70596 9.12436 9.69463 11.13676 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.025235 B = 0.003823 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.310001 B = 7322.174202 C = 7861.047566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.484 4.484 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.680 5.680 14 C 0.089 3.911 15 C -0.102 4.102 16 C 0.035 3.965 17 N -0.529 5.529 18 C 0.064 3.936 19 C -0.069 4.069 20 C -0.168 4.168 21 C -0.138 4.138 22 C -0.137 4.137 23 C 0.061 3.939 24 C -0.115 4.115 25 H 0.065 0.935 26 H 0.030 0.970 27 H 0.021 0.979 28 H 0.008 0.992 29 H 0.092 0.908 30 H 0.257 0.743 31 H 0.325 0.675 32 H 0.027 0.973 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.026 0.974 36 H 0.098 0.902 37 H 0.029 0.971 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.078 0.922 46 H 0.041 0.959 47 H 0.054 0.946 48 H 0.027 0.973 49 H 0.069 0.931 50 H 0.058 0.942 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.011 3.106 -16.942 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.523 4.523 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.311 5.311 14 C -0.021 4.021 15 C -0.140 4.140 16 C -0.092 4.092 17 N -0.254 5.254 18 C -0.064 4.064 19 C -0.069 4.069 20 C -0.225 4.225 21 C -0.196 4.196 22 C -0.195 4.195 23 C -0.068 4.068 24 C -0.154 4.154 25 H 0.084 0.916 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.027 0.973 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.144 0.856 32 H 0.045 0.955 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.116 0.884 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.060 0.940 47 H 0.073 0.927 48 H 0.045 0.955 49 H 0.087 0.913 50 H 0.077 0.923 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.126 4.075 -16.605 18.163 hybrid contribution -0.134 -1.531 0.605 1.651 sum 5.992 2.545 -16.001 17.274 Atomic orbital electron populations 1.21563 0.97768 0.97954 1.01206 1.22106 0.94899 1.01391 1.00110 1.19206 0.95712 0.88307 0.85958 0.95015 1.21134 1.30253 1.11312 0.89607 0.92019 1.24918 0.95616 0.95187 0.98756 1.69889 1.38961 1.23968 1.20967 0.86545 0.78870 0.79874 0.82755 1.19753 1.21332 1.21255 1.60865 1.03579 1.63063 1.03598 1.21418 0.93944 0.96162 0.90608 1.21589 0.95418 1.00658 0.96370 1.22798 0.97502 0.99634 0.89277 1.62057 1.11502 1.49931 1.01864 1.22166 0.93030 0.96887 0.94287 1.20569 0.94554 0.96127 0.95650 1.22484 0.98379 1.01095 1.00544 1.21863 1.00576 1.01003 0.96119 1.21939 0.99796 0.95336 1.02383 1.22018 0.92864 0.92855 0.99024 1.21742 0.96987 1.02566 0.94057 0.91606 0.95131 0.95959 0.97332 0.88949 0.93283 0.85578 0.95531 0.90819 0.91393 0.95580 0.88395 0.95310 0.91080 0.93119 0.92565 0.90455 0.92652 0.92658 0.93056 0.90357 0.93970 0.92728 0.95465 0.91301 0.92317 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.40 37.16 0.35 -2.38 16 2 C -0.15 -3.43 5.51 -26.74 -0.15 -3.57 16 3 C 0.22 5.30 2.14 -68.87 -0.15 5.15 16 4 H 0.03 0.87 7.04 -51.93 -0.37 0.50 16 5 C -0.48 -13.08 7.41 -34.44 -0.26 -13.34 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.51 5.30 -17.82 -0.09 1.42 16 8 N -0.90 -25.39 11.36 55.43 0.63 -24.76 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 N -0.68 -14.24 6.04 -100.83 -0.61 -14.85 16 14 C 0.09 1.60 2.37 -67.59 -0.16 1.44 16 15 C -0.10 -1.73 5.56 -26.64 -0.15 -1.88 16 16 C 0.04 0.49 3.03 -3.82 -0.01 0.48 16 17 N -0.53 -6.74 3.78 -234.66 -0.89 -7.63 16 18 C 0.06 0.70 4.57 -3.82 -0.02 0.68 16 19 C -0.07 -0.68 0.77 -154.51 -0.12 -0.80 16 20 C -0.17 -1.66 7.93 37.16 0.29 -1.37 16 21 C -0.14 -1.15 8.29 37.16 0.31 -0.85 16 22 C -0.14 -1.48 7.72 37.16 0.29 -1.19 16 23 C 0.06 0.79 5.46 -3.84 -0.02 0.76 16 24 C -0.12 -1.70 5.38 -26.66 -0.14 -1.84 16 25 H 0.06 1.54 7.15 -51.93 -0.37 1.17 16 26 H 0.03 0.59 6.34 -51.93 -0.33 0.26 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.01 0.18 7.48 -51.93 -0.39 -0.21 16 29 H 0.09 2.45 6.19 -51.93 -0.32 2.13 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.33 6.57 6.12 -39.29 -0.24 6.33 16 32 H 0.03 0.52 7.21 -51.93 -0.37 0.15 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.07 1.29 7.39 -51.93 -0.38 0.91 16 35 H 0.03 0.38 7.85 -51.93 -0.41 -0.03 16 36 H 0.10 1.25 3.26 -51.93 -0.17 1.08 16 37 H 0.03 0.32 7.92 -51.93 -0.41 -0.09 16 38 H 0.07 0.73 7.90 -51.93 -0.41 0.32 16 39 H 0.05 0.47 8.05 -51.93 -0.42 0.05 16 40 H 0.06 0.52 8.05 -51.93 -0.42 0.11 16 41 H 0.08 0.84 4.26 -51.93 -0.22 0.62 16 42 H 0.05 0.45 8.12 -51.93 -0.42 0.02 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 45 H 0.08 0.97 4.97 -51.93 -0.26 0.71 16 46 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.07 0.79 8.12 -51.93 -0.42 0.36 16 50 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 51 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -27.13 365.70 -10.08 -37.21 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -9.68 Total: 5.41 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -0.02 Total: -17.28 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.87 Total: -47.25 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.13 -10.08 -37.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.123 kcal (2) G-P(sol) polarization free energy of solvation -27.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds