Wall clock time and date at job start Tue Mar 31 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47029 * 2 1 4 4 H 1.08994 * 109.47550 * 51.64369 * 3 2 1 5 5 C 1.50704 * 109.46914 * 171.64141 * 3 2 1 6 6 H 1.08009 * 119.99783 * 119.99941 * 5 3 2 7 7 C 1.37874 * 120.00178 * 299.99651 * 5 3 2 8 8 N 1.31508 * 120.00145 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99963 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47208 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47031 * 120.00282 * 9 7 5 12 12 H 1.48507 * 109.47106 * 240.00610 * 9 7 5 13 13 N 1.46898 * 109.46898 * 291.64071 * 3 2 1 14 14 C 1.46906 * 110.99770 * 151.70548 * 13 3 2 15 15 C 1.53123 * 109.51778 * 161.02846 * 14 13 3 16 16 C 1.53043 * 109.27266 * 177.56195 * 15 14 13 17 17 N 1.46846 * 109.52001 * 300.81722 * 16 15 14 18 18 C 1.46909 * 110.99834 * 185.83932 * 17 16 15 19 19 C 1.52997 * 109.46812 * 149.94283 * 18 17 16 20 20 C 1.53000 * 109.47085 * 67.41517 * 19 18 17 21 21 C 1.53001 * 109.47593 * 307.41280 * 19 18 17 22 22 C 1.53001 * 109.47119 * 187.40800 * 19 18 17 23 23 C 1.46851 * 111.19941 * 61.74743 * 17 16 15 24 24 C 1.53038 * 109.52238 * 298.25497 * 23 17 16 25 25 H 1.09008 * 109.47306 * 186.34884 * 1 2 3 26 26 H 1.09002 * 109.46986 * 306.34549 * 1 2 3 27 27 H 1.08997 * 109.47008 * 66.34575 * 1 2 3 28 28 H 1.08992 * 109.47121 * 239.99240 * 2 1 3 29 29 H 1.09008 * 109.46656 * 119.99729 * 2 1 3 30 30 H 0.97002 * 120.00290 * 179.97438 * 8 7 5 31 31 H 1.00894 * 111.00056 * 27.75427 * 13 3 2 32 32 H 1.08998 * 109.57167 * 40.87224 * 14 13 3 33 33 H 1.08998 * 109.50625 * 57.62151 * 15 14 13 34 34 H 1.08994 * 109.50551 * 297.49620 * 15 14 13 35 35 H 1.09002 * 109.46116 * 180.81053 * 16 15 14 36 36 H 1.08994 * 109.46365 * 60.83562 * 16 15 14 37 37 H 1.08999 * 109.46631 * 29.94593 * 18 17 16 38 38 H 1.08994 * 109.46933 * 269.94789 * 18 17 16 39 39 H 1.09003 * 109.47032 * 271.89819 * 20 19 18 40 40 H 1.09002 * 109.47746 * 151.89564 * 20 19 18 41 41 H 1.09002 * 109.47156 * 31.89346 * 20 19 18 42 42 H 1.09003 * 109.47167 * 180.02562 * 21 19 18 43 43 H 1.08998 * 109.46619 * 300.00345 * 21 19 18 44 44 H 1.09002 * 109.46780 * 59.99965 * 21 19 18 45 45 H 1.09004 * 109.47121 * 300.01000 * 22 19 18 46 46 H 1.09003 * 109.46663 * 60.00354 * 22 19 18 47 47 H 1.08994 * 109.47425 * 180.02562 * 22 19 18 48 48 H 1.09005 * 109.45644 * 58.26925 * 23 17 16 49 49 H 1.09000 * 109.46483 * 178.23555 * 23 17 16 50 50 H 1.09002 * 109.50146 * 299.23819 * 24 23 17 51 51 H 1.08993 * 109.50062 * 179.11834 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5599 1.9976 0.8058 5 6 3.5328 1.4475 0.2065 6 1 4.1803 1.8772 -0.5436 7 6 4.0719 0.9036 1.3530 8 7 3.2836 0.3801 2.2662 9 14 5.9224 0.9092 1.6087 10 1 6.5812 1.5514 0.4430 11 1 6.2493 1.6689 2.8420 12 1 6.4075 -0.4878 1.7444 13 7 1.7216 2.0743 -1.2874 14 6 1.5572 3.5262 -1.1348 15 6 1.6995 4.2035 -2.5007 16 6 1.4671 5.7081 -2.3451 17 7 0.1242 5.9434 -1.7996 18 6 -0.1864 7.3789 -1.7660 19 6 -1.6939 7.5785 -1.9338 20 6 -2.4208 7.0319 -0.7035 21 6 -2.1715 6.8327 -3.1815 22 6 -1.9972 9.0706 -2.0842 23 6 -0.0206 5.3424 -0.4675 24 6 0.1674 3.8269 -0.5670 25 1 -0.3634 -1.0214 0.1136 26 1 -0.3633 0.6091 0.8278 27 1 -0.3633 0.4123 -0.9413 28 1 1.8933 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 3.6629 -0.0029 3.0727 31 1 0.9003 1.6590 -1.7007 32 1 2.3189 3.9106 -0.4565 33 1 0.9629 3.7908 -3.1901 34 1 2.7020 4.0286 -2.8910 35 1 1.5535 6.1915 -3.3183 36 1 2.2126 6.1225 -1.6665 37 1 0.3394 7.8833 -2.5767 38 1 0.1316 7.7971 -0.8111 39 1 -2.6352 5.9730 -0.8487 40 1 -3.3549 7.5756 -0.5618 41 1 -1.7902 7.1575 0.1767 42 1 -3.2455 6.9753 -3.3012 43 1 -1.6536 7.2221 -4.0580 44 1 -1.9555 5.7697 -3.0743 45 1 -1.6569 9.6019 -1.1953 46 1 -1.4794 9.4600 -2.9607 47 1 -3.0712 9.2129 -2.2033 48 1 0.7319 5.7586 0.2023 49 1 -1.0146 5.5602 -0.0769 50 1 -0.5933 3.4083 -1.2259 51 1 0.0754 3.3830 0.4242 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159957.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:35 Heat of formation + Delta-G solvation = -19.127504 kcal Electronic energy + Delta-G solvation = -24037.691214 eV Core-core repulsion = 20970.860762 eV Total energy + Delta-G solvation = -3066.830451 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.45027 -37.28969 -35.50184 -32.92283 -31.50317 -30.60240 -29.33907 -27.39588 -27.22452 -26.55276 -25.06651 -22.93244 -22.62503 -21.51108 -19.68917 -19.18745 -18.86208 -16.16773 -15.90842 -15.11639 -15.08856 -14.85682 -14.36190 -14.01364 -13.94707 -13.63510 -13.23477 -13.19746 -12.94557 -12.77423 -12.56402 -12.32193 -12.04577 -11.86928 -11.69236 -11.51631 -11.39692 -11.22662 -11.07264 -10.86549 -10.86285 -10.72118 -10.62678 -10.57826 -10.33540 -10.12103 -10.03553 -9.88743 -9.65517 -9.37286 -8.99110 -8.30789 -8.11525 -7.10059 -5.93013 -3.96787 3.32655 3.40694 3.46100 4.01539 4.47641 4.70237 4.77502 4.94495 5.11715 5.23855 5.27683 5.36116 5.41349 5.46839 5.52081 5.55785 5.59198 5.67547 5.71451 5.75544 5.80802 5.85276 5.94590 5.98773 6.04563 6.09562 6.14820 6.19430 6.21071 6.21883 6.26603 6.32448 6.39494 6.43032 6.48615 6.54241 6.71646 6.87927 6.90268 7.14039 7.22750 7.30243 7.31814 7.57160 7.83192 7.97436 8.39599 8.47615 8.84060 9.12154 9.68182 11.11947 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.023509 B = 0.003931 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.753845 B = 7121.680020 C = 7553.166386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.285 1.285 13 N -0.681 5.681 14 C 0.096 3.904 15 C -0.102 4.102 16 C 0.058 3.942 17 N -0.531 5.531 18 C 0.063 3.937 19 C -0.063 4.063 20 C -0.143 4.143 21 C -0.128 4.128 22 C -0.141 4.141 23 C 0.048 3.952 24 C -0.143 4.143 25 H 0.035 0.965 26 H 0.042 0.958 27 H 0.034 0.966 28 H 0.039 0.961 29 H 0.099 0.901 30 H 0.258 0.742 31 H 0.317 0.683 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.029 0.971 37 H 0.066 0.934 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.041 0.959 43 H 0.045 0.955 44 H 0.072 0.928 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.028 0.972 49 H 0.082 0.918 50 H 0.062 0.938 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.462 13.260 -7.624 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.111 3.889 4 H 0.022 0.978 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.310 5.310 14 C -0.015 4.015 15 C -0.140 4.140 16 C -0.070 4.070 17 N -0.255 5.255 18 C -0.065 4.065 19 C -0.063 4.063 20 C -0.200 4.200 21 C -0.185 4.185 22 C -0.199 4.199 23 C -0.080 4.080 24 C -0.183 4.183 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.047 0.953 49 H 0.100 0.900 50 H 0.080 0.920 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.088 12.958 -7.950 18.245 hybrid contribution 0.728 0.404 1.333 1.572 sum -9.359 13.362 -6.616 17.604 Atomic orbital electron populations 1.21862 0.99552 0.99581 0.99491 1.21789 0.91321 1.00604 1.02902 1.19157 0.95461 0.89938 0.84295 0.97807 1.21297 0.91792 1.36733 1.03008 0.92136 1.24955 0.97790 0.95801 0.96099 1.69883 1.34154 1.40462 1.09211 0.86532 0.85998 0.77558 0.77859 1.19823 1.21334 1.21167 1.60788 1.40348 1.01267 1.28623 1.21472 0.94415 0.90318 0.95323 1.21553 1.01715 0.92618 0.98126 1.22138 0.88476 0.97669 0.98731 1.61899 1.27455 1.12140 1.24024 1.22201 0.95369 0.88781 1.00141 1.20518 0.94762 0.94718 0.96351 1.22087 0.99509 1.01359 0.97023 1.21729 0.99068 1.01832 0.95897 1.21894 1.01267 0.95362 1.01333 1.22406 1.01261 0.95481 0.88848 1.22347 0.99676 0.94629 1.01657 0.94551 0.93910 0.94709 0.94254 0.88296 0.93245 0.86609 0.90674 0.91900 0.91255 0.91392 0.95246 0.91581 0.94604 0.91826 0.93275 0.92823 0.93975 0.93541 0.90877 0.92997 0.92857 0.92653 0.95347 0.90030 0.91964 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.68 37.16 0.36 -2.51 16 2 C -0.13 -3.01 5.32 -26.73 -0.14 -3.15 16 3 C 0.22 5.38 1.80 -68.87 -0.12 5.25 16 4 H 0.00 0.12 6.69 -51.93 -0.35 -0.23 16 5 C -0.49 -13.52 8.65 -34.44 -0.30 -13.82 16 6 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 7 C 0.05 1.48 5.28 -17.82 -0.09 1.39 16 8 N -0.90 -25.55 11.29 55.43 0.63 -24.93 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.68 -14.28 6.04 -100.82 -0.61 -14.89 16 14 C 0.10 1.77 2.37 -67.59 -0.16 1.61 16 15 C -0.10 -1.59 5.70 -26.65 -0.15 -1.74 16 16 C 0.06 0.78 5.36 -3.83 -0.02 0.76 16 17 N -0.53 -6.79 3.43 -234.66 -0.81 -7.60 16 18 C 0.06 0.70 4.19 -3.82 -0.02 0.68 16 19 C -0.06 -0.61 0.85 -154.51 -0.13 -0.74 16 20 C -0.14 -1.42 7.33 37.16 0.27 -1.14 16 21 C -0.13 -1.29 8.08 37.16 0.30 -0.99 16 22 C -0.14 -1.17 8.32 37.16 0.31 -0.86 16 23 C 0.05 0.68 4.99 -3.83 -0.02 0.66 16 24 C -0.14 -2.35 5.32 -26.65 -0.14 -2.49 16 25 H 0.04 0.65 8.14 -51.92 -0.42 0.22 16 26 H 0.04 0.84 8.11 -51.93 -0.42 0.42 16 27 H 0.03 0.61 6.81 -51.93 -0.35 0.25 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.10 2.64 5.89 -51.92 -0.31 2.33 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.32 6.19 6.59 -39.29 -0.26 5.93 16 32 H 0.08 1.61 7.83 -51.93 -0.41 1.20 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 0.82 7.90 -51.93 -0.41 0.41 16 36 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.69 7.62 -51.93 -0.40 0.29 16 38 H 0.04 0.41 7.64 -51.93 -0.40 0.01 16 39 H 0.06 0.69 7.01 -51.93 -0.36 0.32 16 40 H 0.05 0.44 7.84 -51.93 -0.41 0.03 16 41 H 0.05 0.55 6.65 -51.93 -0.35 0.20 16 42 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.86 7.39 -51.93 -0.38 0.47 16 45 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.05 0.43 8.11 -51.93 -0.42 0.01 16 48 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 1.05 4.13 -51.93 -0.21 0.84 16 50 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 51 H 0.06 1.19 7.11 -51.93 -0.37 0.82 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -27.39 373.87 -10.23 -37.62 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -10.00 Total: 4.65 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -0.06 Total: -17.10 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.79 Total: -47.41 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.39 -10.23 -37.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159957.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.494 kcal (2) G-P(sol) polarization free energy of solvation -27.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds