Wall clock time and date at job start Tue Mar 31 2020 05:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47019 * 2 1 4 4 H 1.09002 * 109.47310 * 56.34011 * 3 2 1 5 5 C 1.50699 * 109.46938 * 176.34300 * 3 2 1 6 6 H 1.08005 * 119.99883 * 120.00065 * 5 3 2 7 7 C 1.37875 * 119.99957 * 299.99699 * 5 3 2 8 8 N 1.31514 * 120.00249 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 119.99818 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47323 * 90.00338 * 9 7 5 11 11 H 1.48504 * 109.47036 * 209.99725 * 9 7 5 12 12 H 1.48498 * 109.47192 * 329.99787 * 9 7 5 13 13 N 1.46906 * 109.46799 * 296.33952 * 3 2 1 14 14 C 1.46902 * 110.99666 * 151.51001 * 13 3 2 15 15 C 1.52999 * 109.46991 * 185.33824 * 14 13 3 16 16 C 1.53123 * 109.52283 * 294.86970 * 15 14 13 17 17 C 1.53044 * 109.27718 * 182.50420 * 16 15 14 18 18 N 1.46851 * 109.57376 * 59.08740 * 17 16 15 19 19 C 1.46898 * 110.99792 * 174.19217 * 18 17 16 20 20 C 1.52996 * 109.47003 * 308.20572 * 19 18 17 21 21 C 1.53000 * 109.47078 * 177.77060 * 20 19 18 22 22 C 1.53008 * 109.47140 * 297.76594 * 20 19 18 23 23 C 1.46854 * 111.19340 * 298.28774 * 18 17 16 24 24 C 1.53039 * 109.52396 * 61.74662 * 23 18 17 25 25 H 1.09002 * 109.47102 * 185.03846 * 1 2 3 26 26 H 1.08996 * 109.47381 * 305.04266 * 1 2 3 27 27 H 1.08999 * 109.46940 * 65.04242 * 1 2 3 28 28 H 1.08995 * 109.47162 * 239.99580 * 2 1 3 29 29 H 1.08998 * 109.46723 * 119.99684 * 2 1 3 30 30 H 0.96991 * 120.00238 * 179.97438 * 8 7 5 31 31 H 1.00895 * 110.99890 * 275.45719 * 13 3 2 32 32 H 1.09002 * 109.46970 * 305.33675 * 14 13 3 33 33 H 1.08993 * 109.47328 * 65.33550 * 14 13 3 34 34 H 1.08997 * 109.52534 * 54.99734 * 15 14 13 35 35 H 1.09002 * 109.50167 * 302.38888 * 16 15 14 36 36 H 1.09007 * 109.49908 * 62.49746 * 16 15 14 37 37 H 1.08992 * 109.40801 * 299.07271 * 17 16 15 38 38 H 1.09001 * 109.44859 * 179.12446 * 17 16 15 39 39 H 1.08997 * 109.46947 * 68.20678 * 19 18 17 40 40 H 1.08995 * 109.46538 * 188.20324 * 19 18 17 41 41 H 1.08994 * 109.47470 * 57.76943 * 20 19 18 42 42 H 1.09007 * 109.47031 * 304.93507 * 21 20 19 43 43 H 1.09005 * 109.47347 * 64.93395 * 21 20 19 44 44 H 1.08993 * 109.47299 * 184.93905 * 21 20 19 45 45 H 1.08995 * 109.46445 * 60.00081 * 22 20 19 46 46 H 1.08997 * 109.46999 * 180.02562 * 22 20 19 47 47 H 1.09002 * 109.46896 * 300.00495 * 22 20 19 48 48 H 1.08991 * 109.46386 * 301.72859 * 23 18 17 49 49 H 1.09004 * 109.44824 * 181.75302 * 23 18 17 50 50 H 1.08994 * 109.50148 * 180.87561 * 24 23 18 51 51 H 1.09003 * 109.50115 * 60.75517 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6241 1.9749 0.8554 5 6 3.5442 1.4434 0.0906 6 1 4.1323 1.8941 -0.6952 7 6 4.1698 0.8690 1.1768 8 7 5.4825 0.8703 1.2562 9 14 3.1527 0.0890 2.5356 10 1 2.9250 -1.3447 2.2227 11 1 3.8786 0.2048 3.8259 12 1 1.8459 0.7868 2.6385 13 7 1.6238 2.1089 -1.2413 14 6 1.4688 3.5552 -1.0357 15 6 0.9086 4.1940 -2.3081 16 6 1.9288 4.0564 -3.4417 17 6 1.3895 4.7516 -4.6939 18 7 1.1421 6.1693 -4.4017 19 6 0.7546 6.8975 -5.6172 20 6 1.7803 6.6305 -6.7205 21 6 1.3474 7.3439 -8.0029 22 6 3.1491 7.1553 -6.2822 23 6 0.1299 6.3256 -3.3492 24 6 0.6323 5.6789 -2.0564 25 1 -0.3633 -1.0237 0.0903 26 1 -0.3634 0.5900 0.8413 27 1 -0.3633 0.4336 -0.9317 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.9226 0.4665 2.0204 31 1 2.2730 1.9176 -1.9896 32 1 0.7827 3.7330 -0.2075 33 1 2.4387 3.9954 -0.8049 34 1 -0.0181 3.6936 -2.5894 35 1 2.8684 4.5220 -3.1440 36 1 2.0966 3.0005 -3.6541 37 1 0.4577 4.2758 -4.9994 38 1 2.1205 4.6688 -5.4982 39 1 -0.2284 6.5595 -5.9453 40 1 0.7191 7.9659 -5.4047 41 1 1.8445 5.5582 -6.9053 42 1 0.3360 7.0348 -8.2669 43 1 1.3678 8.4221 -7.8435 44 1 2.0297 7.0832 -8.8118 45 1 3.4574 6.6470 -5.3686 46 1 3.8798 6.9655 -7.0684 47 1 3.0849 8.2276 -6.0975 48 1 -0.7959 5.8424 -3.6611 49 1 -0.0539 7.3862 -3.1771 50 1 -0.1256 5.7814 -1.2798 51 1 1.5509 6.1708 -1.7365 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160301.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:37 Heat of formation + Delta-G solvation = -22.424040 kcal Electronic energy + Delta-G solvation = -23429.203815 eV Core-core repulsion = 20362.230415 eV Total energy + Delta-G solvation = -3066.973400 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.44251 -36.98670 -35.70299 -33.42613 -31.96112 -30.87925 -30.67197 -27.60406 -27.24678 -26.10428 -23.97273 -23.24629 -22.42388 -21.15138 -19.93713 -19.65926 -19.30706 -16.98569 -16.22458 -15.40064 -15.16350 -15.01277 -14.58183 -14.32093 -13.93518 -13.72507 -13.58439 -13.23161 -12.93935 -12.73322 -12.64025 -12.43821 -12.19972 -12.15792 -12.06485 -11.70289 -11.52975 -11.43688 -11.12270 -11.04124 -10.97148 -10.88008 -10.76801 -10.56999 -10.54595 -10.21210 -10.00875 -9.80916 -9.67761 -9.37658 -9.16749 -8.55709 -8.28360 -7.29620 -6.10876 -4.11419 3.27215 3.37535 3.40189 3.86207 4.38736 4.59363 4.75724 4.90352 4.91590 5.03153 5.07764 5.21821 5.30311 5.34573 5.38699 5.44935 5.50319 5.55576 5.64024 5.64334 5.73297 5.75431 5.81609 5.89023 5.93935 5.96052 5.99440 6.07514 6.07900 6.16929 6.19952 6.28395 6.30070 6.36447 6.41906 6.49180 6.56043 6.72070 6.76939 6.82567 7.00843 7.11413 7.12793 7.14848 7.32150 7.59641 8.09027 8.42313 8.54193 8.92276 9.52966 11.02153 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.026096 B = 0.003405 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.715717 B = 8221.074241 C = 8643.030725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.183 3.817 4 H 0.029 0.971 5 C -0.544 4.544 6 H 0.072 0.928 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.682 5.682 14 C 0.071 3.929 15 C -0.083 4.083 16 C -0.111 4.111 17 C 0.053 3.947 18 N -0.535 5.535 19 C 0.061 3.939 20 C -0.101 4.101 21 C -0.146 4.146 22 C -0.139 4.139 23 C 0.060 3.940 24 C -0.111 4.111 25 H 0.031 0.969 26 H 0.038 0.962 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.333 0.667 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.028 0.972 38 H 0.077 0.923 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.046 0.954 47 H 0.050 0.950 48 H 0.029 0.971 49 H 0.069 0.931 50 H 0.064 0.936 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.736 11.302 -13.693 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C 0.074 3.926 4 H 0.047 0.953 5 C -0.582 4.582 6 H 0.090 0.910 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.190 1.190 13 N -0.311 5.311 14 C -0.059 4.059 15 C -0.102 4.102 16 C -0.149 4.149 17 C -0.075 4.075 18 N -0.259 5.259 19 C -0.067 4.067 20 C -0.119 4.119 21 C -0.204 4.204 22 C -0.197 4.197 23 C -0.068 4.068 24 C -0.149 4.149 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.151 0.849 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.047 0.953 49 H 0.087 0.913 50 H 0.082 0.918 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.820 11.319 -13.306 20.549 hybrid contribution -0.170 -0.581 0.613 0.862 sum -10.990 10.738 -12.693 19.930 Atomic orbital electron populations 1.21703 0.97617 0.98986 1.01480 1.21816 0.93788 0.99485 1.00240 1.19562 0.94064 0.90484 0.88482 0.95276 1.21750 0.90406 1.38483 1.07599 0.90976 1.25009 0.94736 0.95375 0.97936 1.69915 1.08150 1.44982 1.30603 0.86809 0.80370 0.79900 0.80855 1.20500 1.22683 1.19005 1.60766 1.53511 1.07812 1.09040 1.21799 0.98988 0.89586 0.95503 1.21201 0.98820 0.94443 0.95733 1.21632 0.99150 1.00132 0.93966 1.22203 0.99527 0.87204 0.98534 1.61960 1.44399 1.11668 1.07914 1.22156 0.96002 0.98827 0.89723 1.21256 0.95933 1.00576 0.94157 1.21820 1.00959 1.00521 0.97106 1.21736 0.95339 1.00982 1.01596 1.22043 0.92357 1.00160 0.92221 1.21602 1.01643 0.95786 0.95881 0.95016 0.94248 0.92071 0.92456 0.93916 0.92677 0.84937 0.92408 0.94986 0.91338 0.91307 0.91046 0.95363 0.90491 0.95408 0.90996 0.90888 0.92985 0.92702 0.92576 0.91224 0.93518 0.93103 0.95276 0.91299 0.91755 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.73 37.16 0.36 -2.25 16 2 C -0.12 -2.54 5.12 -26.73 -0.14 -2.67 16 3 C 0.18 4.28 1.59 -68.86 -0.11 4.17 16 4 H 0.03 0.72 6.72 -51.93 -0.35 0.37 16 5 C -0.54 -15.03 9.12 -34.44 -0.31 -15.34 16 6 H 0.07 2.16 7.93 -52.48 -0.42 1.74 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 9 Si 0.89 22.20 24.40 -169.99 -4.15 18.05 16 10 H -0.28 -6.78 6.84 56.52 0.39 -6.39 16 11 H -0.30 -7.49 7.11 56.52 0.40 -7.08 16 12 H -0.27 -6.37 6.53 56.52 0.37 -6.00 16 13 N -0.68 -13.50 5.70 -107.95 -0.61 -14.12 16 14 C 0.07 1.27 4.99 -3.82 -0.02 1.25 16 15 C -0.08 -1.18 2.46 -90.49 -0.22 -1.40 16 16 C -0.11 -1.53 5.09 -26.64 -0.14 -1.67 16 17 C 0.05 0.63 4.97 -3.83 -0.02 0.61 16 18 N -0.53 -6.08 4.10 -234.67 -0.96 -7.04 16 19 C 0.06 0.59 4.55 -3.83 -0.02 0.57 16 20 C -0.10 -0.89 2.43 -90.62 -0.22 -1.12 16 21 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 22 C -0.14 -1.31 8.98 37.16 0.33 -0.98 16 23 C 0.06 0.67 5.46 -3.83 -0.02 0.65 16 24 C -0.11 -1.39 5.38 -26.65 -0.14 -1.53 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.09 7.86 -51.93 -0.41 0.68 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.04 1.00 3.22 -51.93 -0.17 0.83 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.33 6.67 6.85 -39.29 -0.27 6.40 16 32 H 0.06 1.04 7.92 -51.93 -0.41 0.63 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.02 6.93 -51.93 -0.36 0.66 16 37 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.87 5.70 -51.93 -0.30 0.57 16 39 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.69 6.05 -51.93 -0.31 0.37 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.78 7.57 -51.93 -0.39 0.38 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 50 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 51 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -28.73 374.73 -9.90 -38.63 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -10.18 Total: 4.01 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -0.42 Total: -18.48 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.80 Total: -47.85 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.15 Total: 18.05 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.73 -9.90 -38.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160301.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.205 kcal (2) G-P(sol) polarization free energy of solvation -28.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds