Wall clock time and date at job start Tue Mar 31 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47118 * 2 1 4 4 H 1.09001 * 109.47265 * 303.69972 * 3 2 1 5 5 C 1.50695 * 109.47256 * 183.69911 * 3 2 1 6 6 H 1.08011 * 119.99970 * 239.99903 * 5 3 2 7 7 C 1.37878 * 120.00374 * 59.99721 * 5 3 2 8 8 N 1.31508 * 120.00320 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99550 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.46921 * 269.99944 * 9 7 5 11 11 H 1.48496 * 109.47177 * 30.00022 * 9 7 5 12 12 H 1.48498 * 109.46880 * 150.00065 * 9 7 5 13 13 N 1.46901 * 109.47449 * 63.69573 * 3 2 1 14 14 C 1.46894 * 111.00363 * 200.74233 * 13 3 2 15 15 C 1.53004 * 109.47516 * 184.86186 * 14 13 3 16 16 C 1.53118 * 109.52234 * 294.87401 * 15 14 13 17 17 C 1.53042 * 109.27466 * 182.50010 * 16 15 14 18 18 N 1.46847 * 109.57142 * 59.08575 * 17 16 15 19 19 C 1.46907 * 110.99501 * 174.19342 * 18 17 16 20 20 C 1.52999 * 109.47083 * 307.59199 * 19 18 17 21 21 C 1.52997 * 109.47002 * 178.43546 * 20 19 18 22 22 C 1.52997 * 109.47245 * 298.43978 * 20 19 18 23 23 C 1.46846 * 111.19818 * 298.28473 * 18 17 16 24 24 C 1.53029 * 109.52304 * 61.74624 * 23 18 17 25 25 H 1.09003 * 109.46935 * 304.94399 * 1 2 3 26 26 H 1.08996 * 109.47158 * 64.94220 * 1 2 3 27 27 H 1.08997 * 109.46905 * 184.94674 * 1 2 3 28 28 H 1.08994 * 109.47141 * 239.99586 * 2 1 3 29 29 H 1.09001 * 109.47151 * 119.99672 * 2 1 3 30 30 H 0.97002 * 119.99967 * 179.97438 * 8 7 5 31 31 H 1.00903 * 111.00009 * 76.78488 * 13 3 2 32 32 H 1.09002 * 109.47049 * 304.85994 * 14 13 3 33 33 H 1.08999 * 109.47578 * 64.86105 * 14 13 3 34 34 H 1.09000 * 109.51772 * 55.00072 * 15 14 13 35 35 H 1.08998 * 109.50306 * 302.38242 * 16 15 14 36 36 H 1.09004 * 109.50160 * 62.49393 * 16 15 14 37 37 H 1.08992 * 109.41174 * 299.06774 * 17 16 15 38 38 H 1.09006 * 109.45323 * 179.12443 * 17 16 15 39 39 H 1.08994 * 109.47153 * 67.59575 * 19 18 17 40 40 H 1.08999 * 109.46957 * 187.59847 * 19 18 17 41 41 H 1.09004 * 109.46835 * 58.43883 * 20 19 18 42 42 H 1.08997 * 109.47084 * 64.96963 * 21 20 19 43 43 H 1.09005 * 109.47191 * 184.96313 * 21 20 19 44 44 H 1.09000 * 109.47720 * 304.96106 * 21 20 19 45 45 H 1.08997 * 109.47163 * 59.99917 * 22 20 19 46 46 H 1.09006 * 109.46978 * 179.97438 * 22 20 19 47 47 H 1.09004 * 109.47127 * 299.99727 * 22 20 19 48 48 H 1.09000 * 109.46391 * 301.73006 * 23 18 17 49 49 H 1.09000 * 109.45132 * 181.75544 * 23 18 17 50 50 H 1.08997 * 109.50557 * 180.87866 * 24 23 18 51 51 H 1.09002 * 109.50515 * 60.75805 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6235 1.9751 -0.8550 5 6 3.5442 1.4435 -0.0917 6 1 4.1328 1.8941 0.6939 7 6 4.1691 0.8693 -1.1783 8 7 5.4817 0.8697 -1.2580 9 14 3.1510 0.0907 -2.5373 10 1 2.9226 -1.3431 -2.2250 11 1 1.8447 0.7893 -2.6394 12 1 3.8766 0.2067 -3.8277 13 7 1.6246 2.1088 1.2416 14 6 1.6469 3.5695 1.0880 15 6 1.3272 4.2286 2.4313 16 6 -0.1093 3.8893 2.8387 17 6 -0.4438 4.6017 4.1513 18 7 -0.2938 6.0519 3.9759 19 6 -0.7391 6.7758 5.1742 20 6 -2.1505 6.3203 5.5502 21 6 -2.5990 7.0456 6.8205 22 6 -3.1138 6.6493 4.4080 23 6 1.0893 6.4049 3.6315 24 6 1.4691 5.7477 2.3028 25 1 -0.3633 0.5886 0.8424 26 1 -0.3633 0.4352 -0.9309 27 1 -0.3633 -1.0238 0.0886 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 5.9213 0.4654 -2.0224 31 1 2.1998 1.8180 2.0179 32 1 2.6357 3.8848 0.7549 33 1 0.9025 3.8688 0.3503 34 1 2.0176 3.8612 3.1907 35 1 -0.7963 4.2211 2.0602 36 1 -0.2044 2.8119 2.9737 37 1 0.2340 4.2583 4.9327 38 1 -1.4712 4.3746 4.4360 39 1 -0.0580 6.5667 5.9991 40 1 -0.7451 7.8466 4.9706 41 1 -2.1501 5.2447 5.7268 42 1 -2.6842 8.1132 6.6184 43 1 -3.5669 6.6575 7.1380 44 1 -1.8655 6.8826 7.6102 45 1 -2.7942 6.1326 3.5030 46 1 -4.1192 6.3244 4.6757 47 1 -3.1141 7.7250 4.2313 48 1 1.7599 6.0531 4.4155 49 1 1.1753 7.4876 3.5389 50 1 2.5009 5.9972 2.0551 51 1 0.8077 6.1096 1.5156 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160302.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:39 Heat of formation + Delta-G solvation = -23.251185 kcal Electronic energy + Delta-G solvation = -23418.272538 eV Core-core repulsion = 20351.263271 eV Total energy + Delta-G solvation = -3067.009268 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.42206 -36.97421 -35.72449 -33.41345 -31.96889 -30.85232 -30.69497 -27.55726 -27.27687 -26.11073 -23.93832 -23.16356 -22.41756 -21.14304 -20.07062 -19.69944 -19.25230 -16.94370 -16.20521 -15.44154 -15.09150 -15.02094 -14.42146 -14.29152 -14.06504 -13.81848 -13.60249 -13.21013 -12.92521 -12.70954 -12.60213 -12.51873 -12.20071 -12.08774 -11.95113 -11.79380 -11.51483 -11.40515 -11.11741 -11.03912 -11.01915 -10.91673 -10.80801 -10.62180 -10.36544 -10.21438 -10.00938 -9.81575 -9.69228 -9.42310 -9.17349 -8.56070 -8.28684 -7.27159 -6.11674 -4.12126 3.26908 3.37420 3.40195 3.86895 4.38345 4.58128 4.74125 4.91551 4.91678 5.03286 5.09230 5.21726 5.30620 5.35684 5.38183 5.43527 5.47851 5.59122 5.63218 5.66406 5.70616 5.74094 5.80626 5.91235 5.92920 5.94763 6.04181 6.09736 6.12593 6.16501 6.21149 6.24492 6.30117 6.32308 6.40266 6.57901 6.69969 6.72651 6.75880 6.80434 7.01418 7.11213 7.14467 7.16530 7.30272 7.59614 8.09477 8.43016 8.51378 8.91093 9.52488 11.01434 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.030229 B = 0.003338 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.031916 B = 8386.712194 C = 8942.197091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.183 3.817 4 H 0.032 0.968 5 C -0.545 4.545 6 H 0.071 0.929 7 C 0.072 3.928 8 N -0.900 5.900 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.264 1.264 12 H -0.299 1.299 13 N -0.679 5.679 14 C 0.071 3.929 15 C -0.085 4.085 16 C -0.099 4.099 17 C 0.049 3.951 18 N -0.534 5.534 19 C 0.060 3.940 20 C -0.100 4.100 21 C -0.146 4.146 22 C -0.138 4.138 23 C 0.059 3.941 24 C -0.110 4.110 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.263 0.737 31 H 0.330 0.670 32 H 0.035 0.965 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.027 0.973 38 H 0.075 0.925 39 H 0.028 0.972 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.045 0.955 47 H 0.050 0.950 48 H 0.029 0.971 49 H 0.069 0.931 50 H 0.065 0.935 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.547 10.852 12.577 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.074 3.926 4 H 0.049 0.951 5 C -0.583 4.583 6 H 0.089 0.911 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.189 1.189 12 H -0.227 1.227 13 N -0.308 5.308 14 C -0.059 4.059 15 C -0.104 4.104 16 C -0.137 4.137 17 C -0.078 4.078 18 N -0.259 5.259 19 C -0.068 4.068 20 C -0.118 4.118 21 C -0.204 4.204 22 C -0.196 4.196 23 C -0.068 4.068 24 C -0.149 4.149 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.146 0.854 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.045 0.955 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.047 0.953 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.366 10.895 11.927 22.295 hybrid contribution 1.305 -0.563 -0.119 1.426 sum -14.061 10.332 11.809 21.069 Atomic orbital electron populations 1.21733 0.97517 0.99421 1.01387 1.21809 0.93897 0.99408 1.00270 1.19534 0.93867 0.90452 0.88759 0.95058 1.21763 0.90592 1.38464 1.07531 0.91091 1.25015 0.94735 0.95386 0.97955 1.69920 1.08203 1.45009 1.30618 0.86803 0.80409 0.79874 0.80835 1.20512 1.18932 1.22687 1.60813 1.58036 1.04590 1.07313 1.21807 0.99728 0.89295 0.95084 1.21219 0.96940 0.94216 0.98044 1.21517 0.96202 1.00162 0.95807 1.22270 1.00719 0.87023 0.97826 1.61984 1.22056 1.07033 1.34850 1.22159 0.95102 0.98663 0.90870 1.21243 0.94741 1.00410 0.95456 1.21820 1.01018 1.00503 0.97087 1.21727 0.97630 1.01476 0.98733 1.22046 0.87921 0.99760 0.97111 1.21595 1.01177 0.95353 0.96745 0.91614 0.94367 0.94940 0.93876 0.92550 0.92692 0.85370 0.94685 0.92331 0.92107 0.91664 0.90416 0.95490 0.90635 0.95397 0.91022 0.90939 0.92700 0.92608 0.92952 0.91263 0.93599 0.93112 0.95261 0.91286 0.91627 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.85 37.16 0.37 -2.27 16 2 C -0.12 -2.53 5.12 -26.73 -0.14 -2.66 16 3 C 0.18 4.24 1.56 -68.87 -0.11 4.14 16 4 H 0.03 0.77 6.98 -51.93 -0.36 0.41 16 5 C -0.54 -15.00 8.70 -34.44 -0.30 -15.30 16 6 H 0.07 2.12 8.04 -52.48 -0.42 1.70 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 9 Si 0.89 22.17 24.40 -169.99 -4.15 18.02 16 10 H -0.28 -6.77 6.84 56.52 0.39 -6.38 16 11 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 12 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 13 N -0.68 -13.25 5.09 -107.96 -0.55 -13.80 16 14 C 0.07 1.26 4.90 -3.83 -0.02 1.24 16 15 C -0.09 -1.22 2.35 -90.50 -0.21 -1.44 16 16 C -0.10 -1.31 5.24 -26.65 -0.14 -1.45 16 17 C 0.05 0.57 4.96 -3.83 -0.02 0.55 16 18 N -0.53 -5.96 4.07 -234.67 -0.95 -6.92 16 19 C 0.06 0.57 4.54 -3.82 -0.02 0.55 16 20 C -0.10 -0.85 2.43 -90.62 -0.22 -1.07 16 21 C -0.15 -1.05 9.19 37.16 0.34 -0.70 16 22 C -0.14 -1.21 8.98 37.16 0.33 -0.88 16 23 C 0.06 0.68 5.46 -3.84 -0.02 0.66 16 24 C -0.11 -1.42 5.38 -26.66 -0.14 -1.56 16 25 H 0.06 1.15 7.58 -51.93 -0.39 0.76 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 1.00 3.22 -51.93 -0.17 0.84 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.33 6.53 8.45 -39.29 -0.33 6.20 16 32 H 0.03 0.71 7.74 -51.93 -0.40 0.31 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.92 8.12 -51.93 -0.42 0.49 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.09 7.83 -51.93 -0.41 0.68 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.81 5.71 -51.93 -0.30 0.51 16 39 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.65 6.10 -51.93 -0.32 0.34 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.71 7.53 -51.93 -0.39 0.32 16 46 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -28.52 376.12 -9.88 -38.40 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -10.28 Total: 3.56 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -0.39 Total: -18.23 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.73 Total: -47.43 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.15 Total: 18.02 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.52 -9.88 -38.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160302.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.153 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds