Wall clock time and date at job start Tue Mar 31 2020 05:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46903 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47196 * 180.02562 * 4 3 2 6 6 C 1.46850 * 111.00139 * 170.00473 * 5 4 3 7 7 C 1.53035 * 109.52157 * 185.84250 * 6 5 4 8 8 C 1.53120 * 109.27505 * 300.81165 * 7 6 5 9 9 C 1.53004 * 109.52148 * 177.56054 * 8 7 6 10 10 N 1.46901 * 109.47157 * 175.00224 * 9 8 7 11 11 C 1.46904 * 110.99674 * 185.40163 * 10 9 8 12 12 H 1.08992 * 109.47550 * 34.15342 * 11 10 9 13 13 C 1.50698 * 109.46909 * 274.14561 * 11 10 9 14 14 H 1.08000 * 120.00085 * 0.02562 * 13 11 10 15 15 C 1.37878 * 119.99576 * 180.02562 * 13 11 10 16 16 N 1.31513 * 120.00144 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99871 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46993 * 60.00132 * 17 15 13 19 19 H 1.48501 * 109.47265 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46948 * 299.99959 * 17 15 13 21 21 C 1.53006 * 109.46681 * 154.14767 * 11 10 9 22 22 C 1.52995 * 109.47216 * 294.86092 * 21 11 10 23 23 C 1.53118 * 109.15706 * 57.66172 * 8 7 6 24 24 C 1.46852 * 110.99874 * 294.21202 * 5 4 3 25 25 H 1.08998 * 109.47608 * 60.00142 * 1 2 3 26 26 H 1.09006 * 109.47154 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47315 * 299.99503 * 1 2 3 28 28 H 1.09000 * 109.46885 * 240.00179 * 2 1 3 29 29 H 1.08999 * 109.47174 * 120.00170 * 2 1 3 30 30 H 1.09000 * 109.47204 * 60.00375 * 3 2 1 31 31 H 1.08999 * 109.47344 * 300.00066 * 3 2 1 32 32 H 1.09000 * 109.47315 * 60.00497 * 4 3 2 33 33 H 1.08999 * 109.47174 * 300.00170 * 4 3 2 34 34 H 1.08994 * 109.46526 * 65.82318 * 6 5 4 35 35 H 1.09003 * 109.45040 * 305.85053 * 6 5 4 36 36 H 1.09006 * 109.50146 * 180.88167 * 7 6 5 37 37 H 1.08996 * 109.50933 * 60.75805 * 7 6 5 38 38 H 1.08999 * 109.52988 * 297.68808 * 8 7 6 39 39 H 1.09005 * 109.46792 * 55.00370 * 9 8 7 40 40 H 1.09002 * 109.47552 * 295.00848 * 9 8 7 41 41 H 1.00891 * 110.99875 * 61.44762 * 10 9 8 42 42 H 0.97008 * 119.99987 * 179.97438 * 16 15 13 43 43 H 1.08999 * 109.46754 * 54.86142 * 21 11 10 44 44 H 1.08995 * 109.47054 * 174.85439 * 21 11 10 45 45 H 1.08998 * 109.46890 * 295.40237 * 22 21 11 46 46 H 1.08994 * 109.47505 * 55.40697 * 22 21 11 47 47 H 1.09005 * 109.46990 * 175.40852 * 22 21 11 48 48 H 1.09002 * 109.50350 * 62.28765 * 23 8 7 49 49 H 1.09008 * 109.50027 * 182.39803 * 23 8 7 50 50 H 1.09004 * 109.45830 * 294.17288 * 24 5 4 51 51 H 1.08995 * 109.46062 * 54.15540 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0596 2.8275 0.0000 6 6 5.5081 2.8735 0.2373 7 6 5.9575 4.3297 0.3762 8 6 5.6071 5.0912 -0.9051 9 6 5.9990 6.5620 -0.7492 10 7 5.7736 7.2661 -2.0186 11 6 6.2583 8.6509 -1.9457 12 1 7.1436 8.6932 -1.3115 13 6 5.1812 9.5300 -1.3642 14 1 4.2318 9.1027 -1.0771 15 6 5.4080 10.8800 -1.1987 16 7 6.5639 11.4004 -1.5488 17 14 4.0732 11.9697 -0.4772 18 1 3.7293 11.4938 0.8868 19 1 4.5631 13.3696 -0.4036 20 1 2.8664 11.9117 -1.3407 21 6 6.6137 9.1414 -3.3508 22 6 7.7935 8.3307 -3.8907 23 6 4.1001 4.9870 -1.1554 24 6 3.7044 3.5118 -1.2499 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9289 -0.8909 33 1 3.9336 0.9285 0.8891 34 1 6.0284 2.4112 -0.6014 35 1 5.7431 2.3318 1.1536 36 1 7.0351 4.3642 0.5368 37 1 5.4479 4.7887 1.2233 38 1 6.1479 4.6574 -1.7463 39 1 7.0525 6.6304 -0.4778 40 1 5.3921 7.0189 0.0325 41 1 4.7996 7.2371 -2.2801 42 1 6.7232 12.3502 -1.4327 43 1 5.7538 9.0138 -4.0084 44 1 6.8860 10.1960 -3.3094 45 1 8.6757 8.5223 -3.2800 46 1 7.5510 7.2687 -3.8558 47 1 7.9944 8.6238 -4.9212 48 1 3.5612 5.4565 -0.3324 49 1 3.8506 5.4913 -2.0891 50 1 4.2333 3.0464 -2.0816 51 1 2.6296 3.4340 -1.4137 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:48 Heat of formation + Delta-G solvation = -36.184574 kcal Electronic energy + Delta-G solvation = -22997.190887 eV Core-core repulsion = 19929.620786 eV Total energy + Delta-G solvation = -3067.570101 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.24734 -36.63666 -35.45592 -33.68850 -31.88060 -30.89677 -30.55136 -28.78139 -26.66116 -24.98193 -23.31231 -22.97781 -22.29643 -21.06812 -20.71408 -19.50995 -19.23556 -16.65718 -15.94641 -15.84056 -14.91982 -14.79626 -14.61766 -14.39355 -13.93127 -13.67699 -13.42401 -13.36102 -13.09937 -12.87867 -12.49347 -12.40048 -12.11880 -11.85430 -11.71537 -11.43627 -11.24884 -11.24322 -11.10910 -11.02832 -10.95524 -10.86745 -10.74345 -10.61112 -10.30525 -10.22942 -10.05263 -9.81259 -9.55628 -9.31543 -9.01186 -8.34493 -8.31110 -7.18251 -5.96312 -4.09323 3.30069 3.35038 3.37666 3.83439 4.41869 4.63763 4.73808 4.87597 4.97957 5.00007 5.03064 5.19170 5.27046 5.29781 5.39598 5.43799 5.51211 5.54714 5.58846 5.64430 5.68939 5.73651 5.81838 5.85755 5.92082 5.97471 6.03704 6.09065 6.15702 6.22989 6.37472 6.41500 6.46091 6.53223 6.56447 6.66393 6.75151 6.88025 7.11729 7.13394 7.18486 7.21397 7.48966 7.63718 7.81277 8.13650 8.20362 8.38907 8.72575 9.04185 9.58121 11.03526 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.003241 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.437499 B = 8636.254219 C = 9376.249252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.118 4.118 4 C 0.056 3.944 5 N -0.539 5.539 6 C 0.060 3.940 7 C -0.111 4.111 8 C -0.084 4.084 9 C 0.074 3.926 10 N -0.690 5.690 11 C 0.215 3.785 12 H 0.030 0.970 13 C -0.544 4.544 14 H 0.052 0.948 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.106 4.106 22 C -0.138 4.138 23 C -0.110 4.110 24 C 0.056 3.944 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.027 0.973 41 H 0.326 0.674 42 H 0.261 0.739 43 H 0.029 0.971 44 H 0.089 0.911 45 H 0.035 0.965 46 H 0.049 0.951 47 H 0.024 0.976 48 H 0.067 0.933 49 H 0.071 0.929 50 H 0.029 0.971 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.715 -19.976 2.325 20.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.156 4.156 4 C -0.072 4.072 5 N -0.264 5.264 6 C -0.068 4.068 7 C -0.149 4.149 8 C -0.103 4.103 9 C -0.056 4.056 10 N -0.319 5.319 11 C 0.107 3.893 12 H 0.048 0.952 13 C -0.583 4.583 14 H 0.070 0.930 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.144 4.144 22 C -0.195 4.195 23 C -0.148 4.148 24 C -0.071 4.071 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.045 0.955 41 H 0.142 0.858 42 H 0.071 0.929 43 H 0.048 0.952 44 H 0.108 0.892 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.048 0.952 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.236 -19.772 2.410 20.595 hybrid contribution -0.991 0.717 0.337 1.269 sum -6.227 -19.055 2.747 20.234 Atomic orbital electron populations 1.21762 0.95800 1.01414 1.01966 1.21492 0.95949 0.96920 1.01782 1.21644 0.94670 0.96372 1.02878 1.22099 0.95540 0.89235 1.00363 1.61945 1.13998 1.14789 1.35631 1.22057 0.87114 0.97707 0.99933 1.21611 1.00425 0.94015 0.98894 1.21224 0.95595 0.96456 0.97024 1.21755 0.99854 0.91481 0.92557 1.60903 1.23375 1.18537 1.29120 1.19116 0.94813 0.82163 0.93216 0.95192 1.21839 1.00701 0.93779 1.41967 0.92971 1.24934 0.95354 0.98042 0.95221 1.69872 1.22485 1.12714 1.47359 0.86728 0.82318 0.79651 0.79705 1.20396 1.21268 1.20292 1.21493 0.94797 1.01518 0.96639 1.21710 0.99276 1.00699 0.97852 1.21623 0.96358 0.94492 1.02351 1.22148 1.00311 0.95236 0.89441 0.92742 0.92932 0.92652 0.92291 0.92104 0.91107 0.91847 0.95280 0.91147 0.95223 0.91288 0.91673 0.91222 0.91322 0.92418 0.95513 0.85766 0.92875 0.95228 0.89242 0.94614 0.93162 0.95733 0.91465 0.91043 0.95232 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.12 -1.05 5.14 -26.73 -0.14 -1.19 16 4 C 0.06 0.54 4.96 -3.82 -0.02 0.52 16 5 N -0.54 -6.38 4.66 -234.67 -1.09 -7.47 16 6 C 0.06 0.69 5.46 -3.83 -0.02 0.67 16 7 C -0.11 -1.45 5.38 -26.65 -0.14 -1.60 16 8 C -0.08 -1.25 2.46 -90.50 -0.22 -1.48 16 9 C 0.07 1.38 4.97 -3.82 -0.02 1.36 16 10 N -0.69 -14.40 5.58 -107.94 -0.60 -15.00 16 11 C 0.21 5.35 1.97 -68.86 -0.14 5.21 16 12 H 0.03 0.83 7.70 -51.93 -0.40 0.43 16 13 C -0.54 -14.74 8.47 -34.44 -0.29 -15.03 16 14 H 0.05 1.41 7.73 -52.49 -0.41 1.00 16 15 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 16 N -0.89 -25.22 11.29 55.43 0.63 -24.59 16 17 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.11 -2.57 5.45 -26.73 -0.15 -2.71 16 22 C -0.14 -2.89 9.85 37.15 0.37 -2.52 16 23 C -0.11 -1.56 5.09 -26.65 -0.14 -1.70 16 24 C 0.06 0.69 5.29 -3.83 -0.02 0.67 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 32 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 33 H 0.07 0.64 7.99 -51.93 -0.41 0.23 16 34 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.72 8.01 -51.93 -0.42 0.30 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.11 7.92 -51.93 -0.41 0.70 16 40 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 41 H 0.33 6.73 6.93 -39.30 -0.27 6.46 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 2.42 5.95 -51.93 -0.31 2.11 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 1.01 7.63 -51.93 -0.40 0.62 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.07 1.05 6.94 -51.92 -0.36 0.69 16 50 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 51 H 0.07 0.83 6.21 -51.93 -0.32 0.51 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -27.35 384.15 -11.47 -38.83 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -10.36 Total: 3.98 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -0.81 Total: -17.80 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -1.07 Total: -47.07 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.35 -11.47 -38.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.644 kcal (2) G-P(sol) polarization free energy of solvation -27.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds