Wall clock time and date at job start Tue Mar 31 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47145 * 2 1 4 4 H 1.09002 * 109.47076 * 54.44825 * 3 2 1 5 5 C 1.50706 * 109.46954 * 174.44608 * 3 2 1 6 6 H 1.08004 * 119.99418 * 115.54952 * 5 3 2 7 7 C 1.37873 * 120.00199 * 295.54634 * 5 3 2 8 8 N 1.31516 * 120.00070 * 348.05937 * 7 5 3 9 9 Si 1.86798 * 119.99793 * 168.05879 * 7 5 3 10 10 H 1.48502 * 109.47167 * 60.00529 * 9 7 5 11 11 H 1.48504 * 109.46992 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47474 * 300.00014 * 9 7 5 13 13 N 1.46902 * 109.47143 * 294.44702 * 3 2 1 14 14 C 1.46902 * 110.99613 * 155.72217 * 13 3 2 15 15 H 1.09001 * 109.47309 * 33.80115 * 14 13 3 16 16 C 1.53006 * 109.46554 * 153.80066 * 14 13 3 17 17 C 1.53007 * 109.46556 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47358 * 299.99780 * 17 16 14 19 19 H 1.09001 * 109.46805 * 300.00667 * 18 17 16 20 20 N 1.46893 * 109.47044 * 180.02562 * 18 17 16 21 21 C 1.46912 * 110.99763 * 175.00063 * 20 18 17 22 22 C 1.52997 * 109.47117 * 291.12394 * 21 20 18 23 23 C 1.46901 * 111.00296 * 298.95246 * 20 18 17 24 24 C 1.52997 * 109.47246 * 164.64490 * 23 20 18 25 25 C 1.52998 * 109.46876 * 60.00152 * 18 17 16 26 26 C 1.52998 * 109.47419 * 300.00054 * 25 18 17 27 27 H 1.08999 * 109.46932 * 306.49294 * 1 2 3 28 28 H 1.09000 * 109.47464 * 66.49292 * 1 2 3 29 29 H 1.09000 * 109.47037 * 186.49138 * 1 2 3 30 30 H 1.08997 * 109.47090 * 239.99926 * 2 1 3 31 31 H 1.09006 * 109.47477 * 119.99970 * 2 1 3 32 32 H 0.97001 * 119.99684 * 359.05675 * 8 7 5 33 33 H 1.00898 * 110.99726 * 31.76867 * 13 3 2 34 34 H 1.08993 * 109.46883 * 299.99623 * 16 14 13 35 35 H 1.09001 * 109.47272 * 60.00026 * 16 14 13 36 36 H 1.09001 * 109.47220 * 60.00102 * 17 16 14 37 37 H 1.08999 * 109.46600 * 180.02562 * 17 16 14 38 38 H 1.08998 * 109.46668 * 51.12722 * 21 20 18 39 39 H 1.09002 * 109.46617 * 171.12547 * 21 20 18 40 40 H 1.08992 * 109.47131 * 186.61555 * 22 21 20 41 41 H 1.09002 * 109.46722 * 306.61101 * 22 21 20 42 42 H 1.08999 * 109.47149 * 66.61472 * 22 21 20 43 43 H 1.09002 * 109.46893 * 284.64746 * 23 20 18 44 44 H 1.09001 * 109.46498 * 44.64465 * 23 20 18 45 45 H 1.08997 * 109.46921 * 186.90860 * 24 23 20 46 46 H 1.08992 * 109.47105 * 306.91128 * 24 23 20 47 47 H 1.08997 * 109.46862 * 66.91329 * 24 23 20 48 48 H 1.09001 * 109.47058 * 60.00073 * 25 18 17 49 49 H 1.09001 * 109.47253 * 180.02562 * 25 18 17 50 50 H 1.09001 * 109.47020 * 300.00041 * 26 25 18 51 51 H 1.09004 * 109.47183 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 0.8361 5 6 3.5407 1.4447 0.1375 6 1 4.1560 1.8214 -0.6662 7 6 4.1282 0.9658 1.2892 8 7 3.3922 0.7278 2.3529 9 14 5.9695 0.6550 1.3388 10 1 6.6931 1.9231 1.0677 11 1 6.3496 0.1462 2.6812 12 1 6.3297 -0.3508 0.3075 13 7 1.6628 2.0952 -1.2608 14 6 1.5992 3.5540 -1.0998 15 1 2.3558 3.8739 -0.3834 16 6 1.8573 4.2276 -2.4492 17 6 1.7904 5.7470 -2.2816 18 6 0.4037 6.1433 -1.7708 19 1 -0.3526 5.8230 -2.4874 20 7 0.3394 7.6020 -1.6105 21 6 -1.0145 8.0311 -1.2346 22 6 -1.9643 7.8141 -2.4142 23 6 1.3303 8.0684 -0.6315 24 6 1.5054 9.5824 -0.7647 25 6 0.1456 5.4696 -0.4216 26 6 0.2125 3.9503 -0.5890 27 1 -0.3633 0.6112 0.8262 28 1 -0.3634 0.4099 -0.9424 29 1 -0.3633 -1.0211 0.1162 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.4383 0.9022 2.3315 33 1 0.7885 1.7313 -1.6089 34 1 2.8450 3.9450 -2.8133 35 1 1.1006 3.9078 -3.1656 36 1 2.5468 6.0672 -1.5651 37 1 1.9738 6.2269 -3.2430 38 1 -1.3566 7.4469 -0.3803 39 1 -1.0000 9.0883 -0.9695 40 1 -2.9398 8.2391 -2.1782 41 1 -1.5600 8.3027 -3.3008 42 1 -2.0697 6.7460 -2.6041 43 1 0.9868 7.8295 0.3751 44 1 2.2842 7.5745 -0.8167 45 1 2.3257 9.9108 -0.1265 46 1 1.7293 9.8324 -1.8017 47 1 0.5860 10.0827 -0.4607 48 1 0.9020 5.7898 0.2950 49 1 -0.8425 5.7515 -0.0578 50 1 -0.5439 3.6301 -1.3056 51 1 0.0282 3.4703 0.3722 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:26 Heat of formation + Delta-G solvation = -24.636097 kcal Electronic energy + Delta-G solvation = -24109.298375 eV Core-core repulsion = 21042.229053 eV Total energy + Delta-G solvation = -3067.069322 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.74403 -37.27046 -35.16795 -32.25738 -32.04115 -31.21255 -30.45571 -29.07699 -26.84335 -25.23366 -23.24433 -22.98320 -22.55798 -21.99887 -20.11785 -19.86453 -18.77880 -16.62348 -16.25870 -15.57083 -15.04148 -14.84474 -14.60927 -14.32976 -13.86713 -13.69452 -13.40905 -13.20130 -12.87497 -12.67289 -12.36335 -12.25023 -12.19758 -12.03838 -11.93615 -11.64126 -11.60085 -11.45667 -11.22538 -11.11013 -10.79083 -10.69816 -10.50876 -10.46043 -10.42082 -10.16880 -10.04810 -10.00295 -9.87194 -9.55834 -8.63053 -8.29852 -8.23427 -7.20858 -6.27505 -3.95852 3.47285 3.49892 3.68048 3.84823 4.57426 4.75779 4.84584 4.95306 5.06183 5.11100 5.13103 5.29254 5.38041 5.39540 5.41257 5.45141 5.50474 5.56191 5.62999 5.73240 5.76267 5.80084 5.86315 5.89062 5.92449 5.95705 5.97017 6.05928 6.11300 6.14191 6.16690 6.20547 6.28559 6.33966 6.41666 6.50027 6.63404 6.72445 6.78835 6.87535 6.96023 7.11075 7.14133 7.22421 7.43219 8.10986 8.20409 8.52957 8.74872 8.99093 9.72895 11.07231 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.004369 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.702146 B = 6406.882319 C = 7206.567747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.209 3.791 4 H -0.008 1.008 5 C -0.577 4.577 6 H 0.054 0.946 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 1.064 2.936 10 H -0.290 1.290 11 H -0.285 1.285 12 H -0.288 1.288 13 N -0.675 5.675 14 C 0.097 3.903 15 H 0.080 0.920 16 C -0.102 4.102 17 C -0.109 4.109 18 C 0.086 3.914 19 H 0.081 0.919 20 N -0.532 5.532 21 C 0.043 3.957 22 C -0.147 4.147 23 C 0.041 3.959 24 C -0.146 4.146 25 C -0.145 4.145 26 C -0.140 4.140 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.268 0.732 33 H 0.315 0.685 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.034 0.966 44 H 0.081 0.919 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.049 0.951 48 H 0.063 0.937 49 H 0.055 0.945 50 H 0.054 0.946 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 13.272 -7.412 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.101 3.899 4 H 0.009 0.991 5 C -0.616 4.616 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.551 5.551 9 Si 0.893 3.107 10 H -0.217 1.217 11 H -0.211 1.211 12 H -0.215 1.215 13 N -0.304 5.304 14 C -0.014 4.014 15 H 0.098 0.902 16 C -0.141 4.141 17 C -0.148 4.148 18 C -0.022 4.022 19 H 0.099 0.901 20 N -0.255 5.255 21 C -0.085 4.085 22 C -0.205 4.205 23 C -0.087 4.087 24 C -0.203 4.203 25 C -0.184 4.184 26 C -0.180 4.180 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.073 0.927 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.720 12.950 -7.130 16.238 hybrid contribution -2.403 0.203 0.444 2.452 sum -9.123 13.152 -6.686 17.347 Atomic orbital electron populations 1.21886 0.98953 1.00056 1.00021 1.21815 0.91941 1.00733 1.02029 1.19266 0.96219 0.89127 0.85265 0.99056 1.21940 0.90874 1.44873 1.03907 0.92732 1.25727 1.06500 0.94348 0.92040 1.70817 1.08340 1.46824 1.29079 0.83618 0.74802 0.76521 0.75779 1.21650 1.21057 1.21466 1.60699 1.35067 1.02335 1.32311 1.21455 0.94583 0.89273 0.96119 0.90211 1.21477 1.02126 0.92904 0.97550 1.21620 0.95609 0.96343 1.01184 1.21771 0.98659 0.85690 0.96129 0.90085 1.62378 1.04401 1.11989 1.46759 1.22141 0.88988 1.00344 0.96983 1.21767 0.98086 1.01806 0.98796 1.22179 0.96783 0.96064 0.93689 1.21778 1.00995 0.95282 1.02274 1.22128 1.01068 0.96628 0.98618 1.22217 0.99571 0.95039 1.01176 0.93899 0.93949 0.94046 0.92895 0.91272 0.92158 0.86807 0.91187 0.92819 0.91870 0.91598 0.94554 0.91064 0.92693 0.91888 0.92809 0.94767 0.90024 0.92513 0.91901 0.93241 0.91852 0.92669 0.92734 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.62 37.16 0.36 -2.46 16 2 C -0.13 -2.89 5.25 -26.73 -0.14 -3.03 16 3 C 0.21 5.10 1.47 -68.86 -0.10 5.00 16 4 H -0.01 -0.21 6.46 -51.93 -0.34 -0.55 16 5 C -0.58 -16.04 8.39 -34.44 -0.29 -16.33 16 6 H 0.05 1.57 7.84 -52.48 -0.41 1.16 16 7 C 0.02 0.49 5.10 -17.82 -0.09 0.40 16 8 N -0.91 -27.10 12.91 55.43 0.72 -26.38 16 9 Si 1.06 25.36 29.92 -169.99 -5.09 20.27 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.68 -14.04 6.05 -100.94 -0.61 -14.65 16 14 C 0.10 1.77 2.27 -67.71 -0.15 1.62 16 15 H 0.08 1.74 7.60 -51.93 -0.39 1.34 16 16 C -0.10 -1.59 5.53 -26.72 -0.15 -1.74 16 17 C -0.11 -1.48 5.05 -26.73 -0.13 -1.61 16 18 C 0.09 1.08 2.09 -67.72 -0.14 0.94 16 19 H 0.08 1.03 6.52 -51.93 -0.34 0.69 16 20 N -0.53 -6.15 4.43 -226.65 -1.00 -7.15 16 21 C 0.04 0.45 5.39 -3.82 -0.02 0.43 16 22 C -0.15 -1.36 9.75 37.16 0.36 -1.00 16 23 C 0.04 0.46 4.62 -3.82 -0.02 0.44 16 24 C -0.15 -1.39 9.83 37.16 0.37 -1.02 16 25 C -0.14 -2.01 4.56 -26.73 -0.12 -2.13 16 26 C -0.14 -2.24 5.16 -26.73 -0.14 -2.38 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.71 6.68 -51.93 -0.35 0.36 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.76 6.51 -51.93 -0.34 1.42 16 32 H 0.27 7.92 6.36 -40.82 -0.26 7.66 16 33 H 0.31 6.00 6.33 -39.29 -0.25 5.75 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.90 6.13 -51.93 -0.32 0.58 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.04 0.40 6.07 -51.93 -0.32 0.08 16 39 H 0.07 0.68 6.43 -51.93 -0.33 0.34 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.53 6.85 -51.93 -0.36 0.17 16 43 H 0.03 0.41 7.12 -51.93 -0.37 0.04 16 44 H 0.08 0.99 5.69 -51.93 -0.30 0.69 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.05 0.44 6.80 -51.93 -0.35 0.09 16 48 H 0.06 0.95 6.75 -51.93 -0.35 0.60 16 49 H 0.05 0.73 6.35 -51.93 -0.33 0.40 16 50 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 51 H 0.06 1.04 7.51 -51.93 -0.39 0.65 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -28.49 368.25 -10.38 -38.87 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -9.53 Total: 6.39 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -0.41 Total: -22.88 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.90 Total: -48.19 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.09 Total: 20.27 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.49 -10.38 -38.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.229 kcal (2) G-P(sol) polarization free energy of solvation -28.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds