Wall clock time and date at job start Tue Mar 31 2020 05:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47077 * 2 1 4 4 H 1.09001 * 109.47666 * 55.66783 * 3 2 1 5 5 C 1.50700 * 109.47378 * 175.67366 * 3 2 1 6 6 H 1.07990 * 120.00406 * 120.27064 * 5 3 2 7 7 C 1.37881 * 119.99371 * 299.99330 * 5 3 2 8 8 N 1.31513 * 120.00107 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99784 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47298 * 90.00449 * 9 7 5 11 11 H 1.48502 * 109.47270 * 210.00301 * 9 7 5 12 12 H 1.48504 * 109.46926 * 330.00351 * 9 7 5 13 13 N 1.46907 * 109.47054 * 295.66923 * 3 2 1 14 14 C 1.46902 * 110.99923 * 294.55817 * 13 3 2 15 15 C 1.46901 * 111.00186 * 170.60156 * 13 3 2 16 16 C 1.52998 * 109.46861 * 283.89565 * 15 13 3 17 17 C 1.53116 * 109.52337 * 293.93776 * 16 15 13 18 18 C 1.53037 * 109.27976 * 182.44218 * 17 16 15 19 19 N 1.46847 * 109.52473 * 59.17974 * 18 17 16 20 20 C 1.46898 * 111.00419 * 174.16217 * 19 18 17 21 21 C 1.53000 * 109.46966 * 304.21065 * 20 19 18 22 22 C 1.52993 * 109.47046 * 64.20972 * 20 19 18 23 23 C 1.46852 * 111.20023 * 298.26238 * 19 18 17 24 24 C 1.53041 * 109.52207 * 61.73836 * 23 19 18 25 25 H 1.08997 * 109.47266 * 305.12458 * 1 2 3 26 26 H 1.09000 * 109.47109 * 65.12642 * 1 2 3 27 27 H 1.08998 * 109.47116 * 185.12416 * 1 2 3 28 28 H 1.08992 * 109.47201 * 239.99582 * 2 1 3 29 29 H 1.08999 * 109.46909 * 119.99565 * 2 1 3 30 30 H 0.97003 * 119.99956 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.47128 * 56.13427 * 14 13 3 32 32 H 1.08996 * 109.46932 * 176.13779 * 14 13 3 33 33 H 1.09006 * 109.46911 * 296.13703 * 14 13 3 34 34 H 1.08999 * 109.46709 * 43.89535 * 15 13 3 35 35 H 1.09003 * 109.47167 * 163.89455 * 15 13 3 36 36 H 1.09005 * 109.52657 * 54.13301 * 16 15 13 37 37 H 1.08991 * 109.50768 * 302.38195 * 17 16 15 38 38 H 1.09004 * 109.50024 * 62.50798 * 17 16 15 39 39 H 1.09003 * 109.46634 * 299.17057 * 18 17 16 40 40 H 1.08997 * 109.45648 * 179.19336 * 18 17 16 41 41 H 1.09003 * 109.47404 * 184.21518 * 20 19 18 42 42 H 1.09004 * 109.47439 * 300.00137 * 21 20 19 43 43 H 1.09002 * 109.47117 * 59.99693 * 21 20 19 44 44 H 1.08999 * 109.47152 * 179.97438 * 21 20 19 45 45 H 1.09000 * 109.46931 * 60.00810 * 22 20 19 46 46 H 1.09007 * 109.46902 * 179.97438 * 22 20 19 47 47 H 1.08998 * 109.47671 * 300.00065 * 22 20 19 48 48 H 1.08998 * 109.45964 * 301.72493 * 23 19 18 49 49 H 1.08999 * 109.46588 * 181.75233 * 23 19 18 50 50 H 1.08997 * 109.50076 * 180.88210 * 24 23 19 51 51 H 1.08998 * 109.50517 * 60.76144 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6147 1.9783 0.8486 5 6 3.5432 1.4439 0.1072 6 1 4.1397 1.8953 -0.6716 7 6 4.1567 0.8738 1.2025 8 7 3.4300 0.3283 2.1534 9 14 6.0199 0.8748 1.3351 10 1 6.4655 2.1050 2.0375 11 1 6.4625 -0.3192 2.0991 12 1 6.6130 0.8395 -0.0259 13 7 1.6376 2.1041 -1.2484 14 6 2.2966 1.4872 -2.4073 15 6 1.9124 3.5461 -1.1923 16 6 0.8574 4.2328 -0.3227 17 6 -0.5109 4.1314 -1.0023 18 6 -1.5504 4.8723 -0.1583 19 7 -1.1564 6.2800 -0.0188 20 6 -2.1996 7.0533 0.6680 21 6 -3.5249 6.8993 -0.0810 22 6 -2.3594 6.5357 2.0988 23 6 0.1327 6.4046 0.6735 24 6 1.2225 5.7094 -0.1457 25 1 -0.3633 0.5913 0.8405 26 1 -0.3633 0.4323 -0.9323 27 1 -0.3633 -1.0235 0.0918 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8617 -0.0731 2.9238 31 1 2.0753 0.4200 -2.4256 32 1 1.9294 1.9503 -3.3231 33 1 3.3742 1.6336 -2.3329 34 1 2.9006 3.7111 -0.7630 35 1 1.8797 3.9617 -2.1994 36 1 0.8176 3.7480 0.6528 37 1 -0.4592 4.5816 -1.9935 38 1 -0.7956 3.0831 -1.0924 39 1 -1.6116 4.4130 0.8283 40 1 -2.5230 4.8141 -0.6468 41 1 -1.9159 8.1055 0.6917 42 1 -3.4111 7.2680 -1.1005 43 1 -3.8087 5.8471 -0.1048 44 1 -4.2991 7.4727 0.4288 45 1 -1.4152 6.6455 2.6324 46 1 -3.1332 7.1098 2.6086 47 1 -2.6432 5.4836 2.0752 48 1 0.0637 5.9379 1.6561 49 1 0.3825 7.4592 0.7892 50 1 2.1761 5.7885 0.3760 51 1 1.3015 6.1844 -1.1236 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:41 Heat of formation + Delta-G solvation = -10.474092 kcal Electronic energy + Delta-G solvation = -24426.767198 eV Core-core repulsion = 21360.311987 eV Total energy + Delta-G solvation = -3066.455211 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.44379 -37.38890 -34.97999 -32.64204 -31.29969 -30.64274 -30.20579 -27.27661 -26.75662 -26.43441 -24.00500 -22.99027 -22.73850 -21.17129 -20.08460 -19.06086 -18.56414 -16.33546 -15.98170 -15.19859 -14.85513 -14.60823 -14.36380 -14.16077 -13.97125 -13.41053 -13.35308 -13.19395 -12.78346 -12.53521 -12.36315 -12.08835 -11.94891 -11.75212 -11.56762 -11.35944 -11.24624 -11.20475 -11.04318 -10.88128 -10.85934 -10.69535 -10.57638 -10.50778 -10.14594 -9.83950 -9.80951 -9.72158 -9.57517 -9.32171 -8.98555 -8.31952 -8.10217 -7.02081 -5.95912 -4.08871 3.26639 3.34246 3.37006 4.02970 4.40980 4.82249 4.98386 5.06012 5.13922 5.27586 5.29307 5.31679 5.45009 5.54243 5.59739 5.63885 5.71545 5.79817 5.83251 5.90476 5.92882 6.05225 6.14397 6.19680 6.20929 6.26899 6.28489 6.36875 6.41047 6.47637 6.48459 6.56306 6.62922 6.69333 6.80385 6.85593 6.89556 7.02131 7.15432 7.22676 7.30548 7.33115 7.42902 7.65682 7.79901 8.04332 8.21882 8.39571 8.54434 9.02212 9.58130 11.02669 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019809 B = 0.004570 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.144594 B = 6124.873878 C = 6446.871458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 C 0.214 3.786 4 H 0.038 0.962 5 C -0.540 4.540 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.537 5.537 14 C 0.035 3.965 15 C 0.067 3.933 16 C -0.077 4.077 17 C -0.097 4.097 18 C 0.049 3.951 19 N -0.531 5.531 20 C 0.075 3.925 21 C -0.146 4.146 22 C -0.188 4.188 23 C 0.057 3.943 24 C -0.110 4.110 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.023 0.977 28 H 0.032 0.968 29 H 0.090 0.910 30 H 0.260 0.740 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.027 0.973 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.035 0.965 49 H 0.066 0.934 50 H 0.064 0.936 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.197 10.448 -3.436 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 C 0.107 3.893 4 H 0.056 0.944 5 C -0.579 4.579 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.260 5.260 14 C -0.113 4.113 15 C -0.062 4.062 16 C -0.096 4.096 17 C -0.135 4.135 18 C -0.078 4.078 19 N -0.256 5.256 20 C -0.033 4.033 21 C -0.204 4.204 22 C -0.247 4.247 23 C -0.070 4.070 24 C -0.149 4.149 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.053 0.947 49 H 0.084 0.916 50 H 0.082 0.918 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.633 10.470 -3.793 15.396 hybrid contribution 1.963 -0.290 1.205 2.321 sum -8.670 10.180 -2.587 13.619 Atomic orbital electron populations 1.21684 0.98938 0.98213 1.00405 1.21597 0.92149 0.99437 1.01822 1.19278 0.92653 0.90927 0.86393 0.94419 1.21756 0.93050 1.37490 1.05625 0.92650 1.24892 0.97640 0.95174 0.95687 1.69876 1.34727 1.38310 1.09541 0.86725 0.86506 0.77503 0.78037 1.20805 1.21227 1.20090 1.62440 1.57126 1.01620 1.04836 1.22160 0.97253 0.99481 0.92448 1.21911 0.97001 0.89672 0.97622 1.21105 0.94941 0.93692 0.99903 1.21491 0.93779 1.00124 0.98106 1.22244 0.99110 0.87387 0.99100 1.62234 1.02147 1.11142 1.50057 1.21671 0.92213 0.98019 0.91409 1.21906 0.95735 1.02026 1.00721 1.22496 1.01991 1.01987 0.98249 1.22064 0.89427 0.99883 0.95668 1.21609 0.97116 0.95950 1.00199 0.94347 0.93541 0.95775 0.94940 0.89174 0.93002 0.92216 0.94450 0.95447 0.93976 0.93377 0.91159 0.92330 0.90392 0.94943 0.91036 0.90442 0.91941 0.92315 0.92628 0.92377 0.92485 0.92263 0.94688 0.91567 0.91775 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.73 37.16 0.36 -2.37 16 2 C -0.11 -2.63 5.14 -26.73 -0.14 -2.76 16 3 C 0.21 5.13 1.63 -68.86 -0.11 5.02 16 4 H 0.04 1.01 6.59 -51.93 -0.34 0.67 16 5 C -0.54 -14.26 6.90 -34.44 -0.24 -14.50 16 6 H 0.06 1.48 5.97 -52.49 -0.31 1.17 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -24.76 11.29 55.43 0.63 -24.13 16 9 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.54 -11.01 3.71 -236.28 -0.88 -11.89 16 14 C 0.04 0.69 8.85 60.07 0.53 1.22 16 15 C 0.07 1.26 4.26 -3.82 -0.02 1.24 16 16 C -0.08 -1.31 2.31 -90.50 -0.21 -1.52 16 17 C -0.10 -1.49 5.24 -26.65 -0.14 -1.63 16 18 C 0.05 0.67 4.67 -3.83 -0.02 0.65 16 19 N -0.53 -6.85 4.68 -226.69 -1.06 -7.91 16 20 C 0.08 0.82 3.03 -67.72 -0.20 0.61 16 21 C -0.15 -1.40 8.84 37.16 0.33 -1.07 16 22 C -0.19 -2.00 8.50 37.15 0.32 -1.69 16 23 C 0.06 0.77 4.89 -3.83 -0.02 0.75 16 24 C -0.11 -1.63 5.38 -26.64 -0.14 -1.77 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.89 7.88 -51.93 -0.41 0.48 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.75 6.27 -51.93 -0.33 0.43 16 29 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.06 1.18 6.20 -51.93 -0.32 0.86 16 32 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 33 H 0.03 0.58 6.31 -51.93 -0.33 0.25 16 34 H 0.04 0.90 6.85 -51.93 -0.36 0.54 16 35 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 36 H 0.07 1.39 6.67 -51.93 -0.35 1.05 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.30 7.86 -51.93 -0.41 0.89 16 39 H 0.03 0.47 6.71 -51.93 -0.35 0.13 16 40 H 0.07 0.89 5.90 -51.93 -0.31 0.59 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.58 6.22 -51.93 -0.32 0.26 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.65 6.54 -51.93 -0.34 0.31 16 46 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 47 H 0.06 0.68 6.63 -51.93 -0.34 0.34 16 48 H 0.03 0.50 6.63 -51.93 -0.34 0.15 16 49 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 50 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 51 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -26.58 366.07 -10.27 -36.84 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -9.66 Total: 1.56 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 0.21 Total: -16.06 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: -1.31 Total: -43.93 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -26.58 -10.27 -36.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.368 kcal (2) G-P(sol) polarization free energy of solvation -26.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds