Wall clock time and date at job start Tue Mar 31 2020 05:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46567 * 2 1 4 4 H 1.09001 * 109.46880 * 175.57820 * 3 2 1 5 5 C 1.50700 * 109.47788 * 55.57868 * 3 2 1 6 6 H 1.08000 * 119.99676 * 245.85356 * 5 3 2 7 7 C 1.37873 * 119.99842 * 65.84921 * 5 3 2 8 8 N 1.31513 * 120.00292 * 5.58042 * 7 5 3 9 9 Si 1.86798 * 120.00155 * 185.58335 * 7 5 3 10 10 H 1.48495 * 109.47617 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.47004 * 300.00197 * 9 7 5 12 12 H 1.48512 * 109.46933 * 59.99751 * 9 7 5 13 13 N 1.46901 * 109.47242 * 295.57267 * 3 2 1 14 14 C 1.46905 * 111.00213 * 180.69304 * 13 3 2 15 15 C 1.46900 * 111.00246 * 304.65159 * 13 3 2 16 16 C 1.52998 * 109.47372 * 174.79414 * 15 13 3 17 17 C 1.53122 * 109.52155 * 294.87239 * 16 15 13 18 18 C 1.53044 * 109.27513 * 182.50176 * 17 16 15 19 19 N 1.46850 * 109.57457 * 59.08317 * 18 17 16 20 20 C 1.46895 * 110.99849 * 174.19338 * 19 18 17 21 21 C 1.52995 * 109.47228 * 304.20835 * 20 19 18 22 22 C 1.52995 * 109.47501 * 64.21173 * 20 19 18 23 23 C 1.46847 * 111.19515 * 298.28845 * 19 18 17 24 24 C 1.53040 * 109.52438 * 61.74659 * 23 19 18 25 25 H 1.08996 * 109.47267 * 64.94325 * 1 2 3 26 26 H 1.09003 * 109.47121 * 184.94535 * 1 2 3 27 27 H 1.09005 * 109.47634 * 304.94168 * 1 2 3 28 28 H 1.08993 * 109.47036 * 240.00324 * 2 1 3 29 29 H 1.08998 * 109.47463 * 119.99664 * 2 1 3 30 30 H 0.97000 * 119.99898 * 355.17440 * 8 7 5 31 31 H 1.08998 * 109.46702 * 60.00002 * 14 13 3 32 32 H 1.08995 * 109.46913 * 180.02562 * 14 13 3 33 33 H 1.09003 * 109.46857 * 300.00213 * 14 13 3 34 34 H 1.08999 * 109.46824 * 294.78982 * 15 13 3 35 35 H 1.08997 * 109.47368 * 54.79121 * 15 13 3 36 36 H 1.09010 * 109.52260 * 54.99483 * 16 15 13 37 37 H 1.08995 * 109.50460 * 302.38001 * 17 16 15 38 38 H 1.09000 * 109.50107 * 62.50148 * 17 16 15 39 39 H 1.09002 * 109.40802 * 299.06804 * 18 17 16 40 40 H 1.08994 * 109.45329 * 179.12504 * 18 17 16 41 41 H 1.09001 * 109.47333 * 184.21255 * 20 19 18 42 42 H 1.08999 * 109.47312 * 60.00260 * 21 20 19 43 43 H 1.08996 * 109.47519 * 180.02562 * 21 20 19 44 44 H 1.09005 * 109.47603 * 300.00371 * 21 20 19 45 45 H 1.09001 * 109.47195 * 299.99894 * 22 20 19 46 46 H 1.09002 * 109.47328 * 59.99254 * 22 20 19 47 47 H 1.08995 * 109.47810 * 180.02562 * 22 20 19 48 48 H 1.08994 * 109.46894 * 301.72412 * 23 19 18 49 49 H 1.09007 * 109.46019 * 181.75851 * 23 19 18 50 50 H 1.08999 * 109.50192 * 180.87694 * 24 23 19 51 51 H 1.09004 * 109.50553 * 60.75337 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 3.1270 1.4436 0.0792 5 6 1.4501 2.1840 1.1720 6 1 0.7632 3.0003 1.0042 7 6 1.7874 1.8200 2.4583 8 7 2.7056 0.9008 2.6624 9 14 0.9403 2.6325 3.9115 10 1 1.4774 2.0691 5.1760 11 1 1.1903 4.0959 3.8753 12 1 -0.5211 2.3781 3.8381 13 7 1.6394 2.1035 -1.2493 14 6 2.1269 3.4886 -1.2919 15 6 2.1045 1.3455 -2.4185 16 6 1.5602 1.9910 -3.6944 17 6 0.0340 1.8697 -3.7182 18 6 -0.4995 2.4610 -5.0251 19 7 0.0857 1.7433 -6.1649 20 6 -0.5082 2.1927 -7.4310 21 6 -2.0281 2.0287 -7.3680 22 6 -0.1634 3.6653 -7.6619 23 6 1.5470 1.8866 -6.1889 24 6 2.1417 1.2766 -4.9175 25 1 -0.3633 0.4352 -0.9309 26 1 -0.3633 -1.0239 0.0886 27 1 -0.3634 0.5886 0.8424 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.0952 0.4291 1.9097 31 1 3.2149 3.4930 -1.2274 32 1 1.8160 3.9546 -2.2269 33 1 1.7109 4.0461 -0.4526 34 1 3.1942 1.3510 -2.4450 35 1 1.7479 0.3178 -2.3507 36 1 1.8423 3.0437 -3.7190 37 1 -0.2486 0.8190 -3.6532 38 1 -0.3875 2.4135 -2.8729 39 1 -0.2293 3.5155 -5.0824 40 1 -1.5846 2.3621 -5.0520 41 1 -0.1119 1.5939 -8.2510 42 1 -2.4245 2.6275 -6.5480 43 1 -2.4688 2.3617 -8.3076 44 1 -2.2739 0.9795 -7.2035 45 1 -0.5597 4.2642 -6.8419 46 1 0.9194 3.7822 -7.7067 47 1 -0.6044 3.9990 -8.6011 48 1 1.8075 2.9437 -6.2408 49 1 1.9481 1.3706 -7.0613 50 1 3.2249 1.3970 -4.9285 51 1 1.8931 0.2163 -4.8719 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172871.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:44 Heat of formation + Delta-G solvation = -8.113003 kcal Electronic energy + Delta-G solvation = -24245.842282 eV Core-core repulsion = 21179.489455 eV Total energy + Delta-G solvation = -3066.352827 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.67990 -37.65633 -35.25787 -33.05130 -30.99420 -30.80918 -30.46480 -27.42021 -26.84194 -26.00504 -24.37486 -23.07323 -22.89981 -21.56006 -20.19351 -19.10990 -18.86999 -16.65371 -16.20186 -15.32448 -15.04478 -14.58620 -14.47125 -14.26798 -13.87745 -13.76031 -13.65247 -13.34706 -13.04123 -12.58196 -12.42812 -12.30922 -12.05609 -11.89052 -11.69185 -11.58135 -11.43605 -11.34609 -11.14984 -10.97787 -10.85176 -10.75927 -10.67931 -10.33595 -10.16610 -10.07226 -9.97165 -9.87358 -9.71676 -9.49651 -8.40255 -8.31441 -8.26395 -7.16536 -6.27146 -3.97809 3.45886 3.48189 3.66251 3.85256 4.53904 4.67387 4.79124 4.85996 4.94892 5.07239 5.13002 5.20515 5.37804 5.38637 5.43054 5.47365 5.49315 5.59907 5.64566 5.69130 5.75167 5.83380 5.86757 5.98093 6.03026 6.05601 6.13371 6.17419 6.24576 6.26103 6.32561 6.36677 6.43181 6.48454 6.56813 6.65953 6.73634 6.83585 6.96000 7.12702 7.13498 7.15557 7.26616 7.39423 7.58003 7.96589 8.10122 8.45038 8.66102 8.94911 9.71544 11.08579 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.029518 B = 0.003752 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.354302 B = 7461.517229 C = 7575.229102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.116 4.116 3 C 0.204 3.796 4 H -0.014 1.014 5 C -0.573 4.573 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 1.066 2.934 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.523 5.523 14 C 0.039 3.961 15 C 0.055 3.945 16 C -0.084 4.084 17 C -0.099 4.099 18 C 0.049 3.951 19 N -0.531 5.531 20 C 0.075 3.925 21 C -0.147 4.147 22 C -0.188 4.188 23 C 0.058 3.942 24 C -0.112 4.112 25 H 0.045 0.955 26 H 0.017 0.983 27 H 0.065 0.935 28 H 0.025 0.975 29 H 0.060 0.940 30 H 0.270 0.730 31 H 0.006 0.994 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.015 0.985 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.032 0.968 49 H 0.068 0.932 50 H 0.061 0.939 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.036 2.687 -19.014 19.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.154 4.154 3 C 0.098 3.902 4 H 0.004 0.996 5 C -0.612 4.612 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.894 3.106 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.214 1.214 13 N -0.247 5.247 14 C -0.110 4.110 15 C -0.074 4.074 16 C -0.103 4.103 17 C -0.136 4.136 18 C -0.078 4.078 19 N -0.255 5.255 20 C -0.033 4.033 21 C -0.205 4.205 22 C -0.246 4.246 23 C -0.069 4.069 24 C -0.150 4.150 25 H 0.064 0.936 26 H 0.036 0.964 27 H 0.084 0.916 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.025 0.975 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.033 0.967 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.051 0.949 49 H 0.086 0.914 50 H 0.079 0.921 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.671 2.265 -17.286 18.333 hybrid contribution 1.248 0.789 -1.801 2.329 sum -4.423 3.054 -19.087 19.829 Atomic orbital electron populations 1.21463 0.96180 0.97930 1.02187 1.21681 0.96664 0.98334 0.98766 1.19394 0.92834 0.91087 0.86897 0.99611 1.21802 1.29751 1.18529 0.91107 0.92647 1.25687 0.95666 0.97065 1.00126 1.70796 1.24511 1.24573 1.35498 0.83587 0.75709 0.75429 0.75832 1.21009 1.21674 1.21421 1.62004 1.59164 1.01449 1.02086 1.22209 0.96498 0.91541 1.00742 1.22183 0.95953 0.98672 0.90549 1.21237 0.95958 0.99365 0.93710 1.21498 0.94764 1.01834 0.95545 1.22255 0.99375 0.95271 0.90902 1.62207 1.04576 1.56573 1.02152 1.21681 0.95481 0.93721 0.92420 1.21911 0.94410 1.02616 1.01544 1.22490 1.01764 0.98355 1.02033 1.22049 0.87700 0.98740 0.98459 1.21624 0.98961 1.00773 0.93636 0.93569 0.96387 0.91628 0.95669 0.92170 0.91872 0.97525 0.93607 0.90809 0.96715 0.90738 0.91820 0.91657 0.90115 0.95186 0.90696 0.90327 0.92289 0.92526 0.91796 0.92348 0.92524 0.92355 0.94943 0.91376 0.92068 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.53 37.16 0.35 -2.26 16 2 C -0.12 -2.69 5.04 -26.73 -0.13 -2.82 16 3 C 0.20 5.02 1.39 -68.86 -0.10 4.93 16 4 H -0.01 -0.37 7.64 -51.93 -0.40 -0.77 16 5 C -0.57 -15.43 6.17 -34.44 -0.21 -15.64 16 6 H 0.06 1.52 6.97 -52.49 -0.37 1.15 16 7 C 0.02 0.51 5.28 -17.82 -0.09 0.42 16 8 N -0.92 -27.16 13.20 55.43 0.73 -26.43 16 9 Si 1.07 25.02 29.91 -169.99 -5.08 19.93 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.52 -10.85 3.69 -236.28 -0.87 -11.72 16 14 C 0.04 0.76 9.06 60.07 0.54 1.31 16 15 C 0.05 0.98 4.03 -3.82 -0.02 0.96 16 16 C -0.08 -1.22 2.08 -90.50 -0.19 -1.41 16 17 C -0.10 -1.42 5.24 -26.65 -0.14 -1.55 16 18 C 0.05 0.60 4.67 -3.83 -0.02 0.58 16 19 N -0.53 -6.08 4.68 -226.69 -1.06 -7.14 16 20 C 0.08 0.72 3.02 -67.72 -0.20 0.51 16 21 C -0.15 -1.28 8.84 37.16 0.33 -0.95 16 22 C -0.19 -1.66 8.51 37.16 0.32 -1.34 16 23 C 0.06 0.66 4.89 -3.83 -0.02 0.64 16 24 C -0.11 -1.40 5.38 -26.65 -0.14 -1.55 16 25 H 0.05 0.95 7.88 -51.93 -0.41 0.54 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 1.57 6.90 -51.93 -0.36 1.21 16 28 H 0.02 0.53 5.98 -51.93 -0.31 0.22 16 29 H 0.06 1.53 6.19 -51.93 -0.32 1.21 16 30 H 0.27 7.97 5.64 -40.82 -0.23 7.74 16 31 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.05 0.78 6.03 -51.93 -0.31 0.46 16 33 H 0.07 1.57 6.62 -51.93 -0.34 1.23 16 34 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 1.38 5.84 -51.93 -0.30 1.07 16 36 H 0.06 0.96 6.11 -51.92 -0.32 0.65 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.30 7.83 -51.93 -0.41 0.89 16 39 H 0.03 0.37 6.71 -51.93 -0.35 0.02 16 40 H 0.07 0.87 5.90 -51.93 -0.31 0.56 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.53 6.22 -51.93 -0.32 0.21 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.56 6.63 -51.93 -0.34 0.21 16 46 H 0.06 0.51 6.54 -51.93 -0.34 0.17 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.03 0.37 6.63 -51.93 -0.34 0.02 16 49 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -28.20 363.72 -10.05 -38.26 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -9.53 Total: -0.19 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 0.28 Total: -18.18 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -1.20 Total: -45.29 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.20 -10.05 -38.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172871.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.144 kcal (2) G-P(sol) polarization free energy of solvation -28.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds