Wall clock time and date at job start Tue Mar 31 2020 05:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 C 1.53004 * 109.46691 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.46885 * 180.02562 * 4 3 2 6 6 C 1.46839 * 111.00102 * 170.00175 * 5 4 3 7 7 C 1.53033 * 109.52632 * 174.15983 * 6 5 4 8 8 C 1.53114 * 109.27895 * 59.17359 * 7 6 5 9 9 N 1.46898 * 109.52581 * 182.44288 * 8 7 6 10 10 C 1.46907 * 110.99984 * 313.12567 * 9 8 7 11 11 C 1.46895 * 111.00376 * 189.17159 * 9 8 7 12 12 H 1.09004 * 109.46869 * 326.13508 * 11 9 8 13 13 C 1.50701 * 109.47525 * 206.13951 * 11 9 8 14 14 H 1.08004 * 119.99754 * 359.97438 * 13 11 9 15 15 C 1.37878 * 120.00390 * 180.02562 * 13 11 9 16 16 N 1.31514 * 119.99930 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99985 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47387 * 59.99827 * 17 15 13 19 19 H 1.48504 * 109.47046 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46995 * 299.99668 * 17 15 13 21 21 C 1.53002 * 109.47380 * 86.13684 * 11 9 8 22 22 C 1.52999 * 109.46935 * 294.88927 * 21 11 9 23 23 C 1.53116 * 109.16300 * 302.35073 * 8 7 6 24 24 C 1.46839 * 111.00022 * 45.78691 * 5 4 3 25 25 H 1.09001 * 109.46797 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46758 * 299.99878 * 1 2 3 27 27 H 1.08997 * 109.47071 * 59.99740 * 1 2 3 28 28 H 1.09001 * 109.46758 * 240.00122 * 2 1 3 29 29 H 1.08997 * 109.47071 * 120.00260 * 2 1 3 30 30 H 1.08997 * 109.46764 * 60.00370 * 3 2 1 31 31 H 1.08997 * 109.47403 * 300.00056 * 3 2 1 32 32 H 1.08997 * 109.47244 * 60.00627 * 4 3 2 33 33 H 1.08997 * 109.47213 * 300.00136 * 4 3 2 34 34 H 1.08999 * 109.46616 * 54.13977 * 6 5 4 35 35 H 1.09004 * 109.46522 * 294.17476 * 6 5 4 36 36 H 1.08996 * 109.50779 * 179.12376 * 7 6 5 37 37 H 1.09007 * 109.49998 * 299.23822 * 7 6 5 38 38 H 1.09004 * 109.52295 * 62.25299 * 8 7 6 39 39 H 1.09000 * 109.47061 * 59.99877 * 10 9 8 40 40 H 1.09001 * 109.47388 * 179.97438 * 10 9 8 41 41 H 1.08995 * 109.46981 * 299.99598 * 10 9 8 42 42 H 0.96996 * 120.00073 * 180.02562 * 16 15 13 43 43 H 1.08998 * 109.46727 * 54.89028 * 21 11 9 44 44 H 1.08996 * 109.47105 * 174.88932 * 21 11 9 45 45 H 1.08996 * 109.47405 * 316.10918 * 22 21 11 46 46 H 1.09002 * 109.47314 * 76.11000 * 22 21 11 47 47 H 1.09003 * 109.46730 * 196.10841 * 22 21 11 48 48 H 1.09003 * 109.50241 * 177.59541 * 23 8 7 49 49 H 1.08996 * 109.50297 * 297.70855 * 23 8 7 50 50 H 1.09001 * 109.46302 * 65.82872 * 24 5 4 51 51 H 1.09003 * 109.45947 * 305.85120 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0598 2.8275 0.0000 6 6 5.5082 2.8734 0.2374 7 6 6.0057 4.3128 0.0871 8 6 5.2760 5.2075 1.0929 9 7 5.7068 6.6004 0.9138 10 6 7.1700 6.6907 0.8176 11 6 5.1969 7.4525 1.9962 12 1 4.2170 7.0932 2.3105 13 6 5.0773 8.8720 1.5043 14 1 5.3529 9.1167 0.4891 15 6 4.6169 9.8584 2.3505 16 7 4.2817 9.5606 3.5868 17 14 4.4693 11.6180 1.7408 18 1 3.5319 11.6662 0.5900 19 1 3.9537 12.4794 2.8350 20 1 5.8045 12.1070 1.3125 21 6 6.1626 7.4035 3.1820 22 6 6.1867 5.9878 3.7618 23 6 3.7670 5.1040 0.8553 24 6 3.3344 3.6417 0.9833 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9564 -0.8899 32 1 3.9330 0.9288 -0.8909 33 1 3.9338 0.9284 0.8891 34 1 6.0154 2.2363 -0.4871 35 1 5.7224 2.5185 1.2455 36 1 7.0781 4.3491 0.2787 37 1 5.8042 4.6636 -0.9251 38 1 5.5084 4.8808 2.1066 39 1 7.5148 6.1058 -0.0351 40 1 7.4618 7.7325 0.6850 41 1 7.6189 6.3008 1.7311 42 1 3.9575 10.2545 4.1820 43 1 7.1634 7.6760 2.8470 44 1 5.8325 8.1045 3.9486 45 1 5.1681 5.6060 3.8309 46 1 6.7745 5.3391 3.1124 47 1 6.6347 6.0097 4.7553 48 1 3.2399 5.7057 1.5958 49 1 3.5303 5.4673 -0.1447 50 1 3.5588 3.2832 1.9880 51 1 2.2627 3.5626 0.8004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176685.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:59 Heat of formation + Delta-G solvation = 0.681614 kcal Electronic energy + Delta-G solvation = -24050.457507 eV Core-core repulsion = 20984.486043 eV Total energy + Delta-G solvation = -3065.971464 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.43502 -37.46752 -35.17899 -33.09427 -31.66174 -30.77887 -30.28361 -28.20117 -27.05630 -25.47877 -23.61843 -22.72335 -22.58062 -21.49632 -20.37064 -19.29372 -18.77433 -16.42345 -15.85422 -15.73932 -15.21695 -14.78835 -14.42452 -14.21049 -13.91145 -13.86465 -13.47074 -13.36992 -12.99726 -12.67801 -12.46068 -12.23912 -11.95227 -11.68101 -11.56887 -11.42229 -11.21025 -11.14127 -11.02432 -10.88344 -10.83397 -10.69888 -10.67865 -10.56337 -10.40377 -10.16698 -10.07448 -9.80912 -9.60100 -9.34073 -8.85743 -8.26363 -8.15410 -6.91597 -5.93930 -3.96621 3.36953 3.40799 3.44533 3.98600 4.46683 4.71772 4.79568 4.95146 4.96772 5.17687 5.20583 5.26426 5.35893 5.40661 5.50722 5.53287 5.61355 5.66308 5.71192 5.74916 5.80445 5.91192 5.94698 5.99325 6.06725 6.08765 6.10087 6.15936 6.19443 6.20168 6.26534 6.37315 6.42042 6.48940 6.51940 6.70721 6.77945 6.84753 6.97498 7.06168 7.26066 7.27646 7.33862 7.54991 7.77792 7.94959 8.31383 8.48841 8.69758 9.10627 9.67937 11.12265 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.021090 B = 0.003912 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.329064 B = 7156.020229 C = 7721.878641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.056 3.944 5 N -0.536 5.536 6 C 0.061 3.939 7 C -0.112 4.112 8 C 0.070 3.930 9 N -0.528 5.528 10 C 0.030 3.970 11 C 0.216 3.784 12 H 0.038 0.962 13 C -0.491 4.491 14 H 0.061 0.939 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.895 3.105 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.279 1.279 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.105 4.105 24 C 0.053 3.947 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.028 0.972 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.065 0.935 41 H 0.019 0.981 42 H 0.259 0.741 43 H 0.040 0.960 44 H 0.097 0.903 45 H 0.044 0.956 46 H 0.038 0.962 47 H 0.032 0.968 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.026 0.974 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.349 -16.878 -4.639 17.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.163 4.163 4 C -0.072 4.072 5 N -0.261 5.261 6 C -0.068 4.068 7 C -0.150 4.150 8 C -0.039 4.039 9 N -0.251 5.251 10 C -0.118 4.118 11 C 0.110 3.890 12 H 0.056 0.944 13 C -0.530 4.530 14 H 0.079 0.921 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.723 3.277 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.193 4.193 22 C -0.206 4.206 23 C -0.143 4.143 24 C -0.075 4.075 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.038 0.962 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.115 0.885 45 H 0.063 0.937 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.090 0.910 49 H 0.093 0.907 50 H 0.044 0.956 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.706 -16.399 -5.379 17.342 hybrid contribution 0.463 0.332 1.409 1.520 sum -1.243 -16.067 -3.970 16.597 Atomic orbital electron populations 1.21766 0.95814 1.01385 1.01995 1.21493 0.95930 0.96886 1.01779 1.21799 0.94852 0.96632 1.03002 1.22116 0.95150 0.89664 1.00256 1.62017 1.03981 1.09741 1.50384 1.22061 0.87899 0.97974 0.98821 1.21754 0.98859 0.93141 1.01270 1.21905 0.94698 0.90173 0.97125 1.62359 1.09142 1.05562 1.48043 1.22335 0.89747 1.01576 0.98191 1.19366 0.93226 0.91676 0.84734 0.94386 1.21138 1.41995 0.91952 0.97923 0.92122 1.24928 0.95760 0.98833 0.94926 1.69864 1.45187 1.33156 1.05484 0.86616 0.78335 0.84559 0.78189 1.20307 1.21552 1.20477 1.22263 0.99842 0.94629 1.02524 1.22095 0.99901 0.99727 0.98889 1.21604 0.95811 0.93565 1.03327 1.22243 0.98469 0.94282 0.92458 0.92957 0.92720 0.92636 0.92080 0.92309 0.91464 0.90971 0.91092 0.95413 0.91334 0.95500 0.91925 0.90647 0.93516 0.93596 0.91624 0.96230 0.93105 0.94093 0.88475 0.93703 0.94320 0.94938 0.91042 0.90723 0.95591 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.02 5.93 -26.73 -0.16 -1.18 16 3 C -0.13 -1.25 4.46 -26.73 -0.12 -1.37 16 4 C 0.06 0.62 5.27 -3.82 -0.02 0.60 16 5 N -0.54 -7.26 4.81 -234.68 -1.13 -8.39 16 6 C 0.06 0.81 5.42 -3.84 -0.02 0.79 16 7 C -0.11 -1.72 4.56 -26.66 -0.12 -1.84 16 8 C 0.07 1.26 1.69 -67.60 -0.11 1.14 16 9 N -0.53 -11.16 4.45 -228.15 -1.02 -12.18 16 10 C 0.03 0.58 7.39 60.07 0.44 1.02 16 11 C 0.22 5.30 1.74 -68.87 -0.12 5.18 16 12 H 0.04 1.02 5.99 -51.93 -0.31 0.71 16 13 C -0.49 -13.44 8.41 -34.44 -0.29 -13.73 16 14 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 15 C 0.06 1.53 5.29 -17.82 -0.09 1.44 16 16 N -0.90 -25.38 11.29 55.43 0.63 -24.76 16 17 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.15 -3.59 4.71 -26.73 -0.13 -3.72 16 22 C -0.15 -2.97 8.08 37.16 0.30 -2.67 16 23 C -0.10 -1.85 5.37 -26.65 -0.14 -2.00 16 24 C 0.05 0.78 4.85 -3.84 -0.02 0.76 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.71 6.21 -51.93 -0.32 0.39 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 34 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.92 6.50 -51.93 -0.34 0.58 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 0.88 4.03 -51.93 -0.21 0.67 16 39 H 0.05 0.77 6.26 -51.93 -0.32 0.45 16 40 H 0.06 1.36 7.73 -51.93 -0.40 0.96 16 41 H 0.02 0.37 4.99 -51.93 -0.26 0.11 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.04 0.95 6.10 -51.93 -0.32 0.63 16 44 H 0.10 2.58 5.95 -51.93 -0.31 2.28 16 45 H 0.04 0.90 7.38 -51.93 -0.38 0.52 16 46 H 0.04 0.71 5.17 -51.93 -0.27 0.44 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.07 1.40 6.50 -51.93 -0.34 1.06 16 49 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 50 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.08 1.05 5.81 -51.93 -0.30 0.74 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -27.53 363.15 -10.84 -38.37 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -9.54 Total: 1.36 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -0.23 Total: -16.38 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -1.52 Total: -45.32 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.53 -10.84 -38.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176685.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.054 kcal (2) G-P(sol) polarization free energy of solvation -27.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds