Wall clock time and date at job start Tue Mar 31 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47136 * 2 1 4 4 C 1.52994 * 109.46930 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47318 * 180.02562 * 4 3 2 6 6 C 1.46840 * 111.00420 * 170.00160 * 5 4 3 7 7 C 1.53036 * 109.52460 * 185.83871 * 6 5 4 8 8 C 1.53115 * 109.28094 * 300.81942 * 7 6 5 9 9 N 1.46901 * 109.52632 * 177.56205 * 8 7 6 10 10 C 1.46898 * 110.99946 * 61.16956 * 9 8 7 11 11 C 1.46901 * 111.00017 * 185.12856 * 9 8 7 12 12 H 1.08994 * 109.47639 * 56.25900 * 11 9 8 13 13 C 1.50696 * 109.47218 * 176.26449 * 11 9 8 14 14 H 1.08003 * 120.00024 * 4.15899 * 13 11 9 15 15 C 1.37873 * 120.00003 * 184.16382 * 13 11 9 16 16 N 1.31512 * 120.00497 * 23.14107 * 15 13 11 17 17 Si 1.86811 * 120.00027 * 203.13826 * 15 13 11 18 18 H 1.48499 * 109.46937 * 89.99907 * 17 15 13 19 19 H 1.48497 * 109.46894 * 210.00089 * 17 15 13 20 20 H 1.48492 * 109.46930 * 330.00249 * 17 15 13 21 21 C 1.53009 * 109.46720 * 296.26124 * 11 9 8 22 22 C 1.53002 * 109.46848 * 171.33111 * 21 11 9 23 23 C 1.53116 * 109.21240 * 57.61768 * 8 7 6 24 24 C 1.46847 * 110.99840 * 294.21142 * 5 4 3 25 25 H 1.09001 * 109.46591 * 299.99874 * 1 2 3 26 26 H 1.08993 * 109.47330 * 59.99542 * 1 2 3 27 27 H 1.08998 * 109.47234 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46591 * 240.00126 * 2 1 3 29 29 H 1.09003 * 109.47150 * 120.00513 * 2 1 3 30 30 H 1.09003 * 109.46412 * 60.00272 * 3 2 1 31 31 H 1.08995 * 109.46890 * 300.00267 * 3 2 1 32 32 H 1.09007 * 109.47262 * 60.00038 * 4 3 2 33 33 H 1.09003 * 109.47119 * 300.00368 * 4 3 2 34 34 H 1.09000 * 109.46662 * 65.82247 * 6 5 4 35 35 H 1.09006 * 109.45618 * 305.84773 * 6 5 4 36 36 H 1.09002 * 109.50770 * 180.88013 * 7 6 5 37 37 H 1.08997 * 109.50443 * 60.76290 * 7 6 5 38 38 H 1.09004 * 109.52329 * 297.68613 * 8 7 6 39 39 H 1.09003 * 109.46682 * 183.95399 * 10 9 8 40 40 H 1.08993 * 109.47207 * 303.95394 * 10 9 8 41 41 H 1.09001 * 109.47051 * 63.96160 * 10 9 8 42 42 H 0.96998 * 120.00741 * 180.02562 * 16 15 13 43 43 H 1.08995 * 109.47238 * 51.32787 * 21 11 9 44 44 H 1.09003 * 109.47266 * 291.32579 * 21 11 9 45 45 H 1.08995 * 109.47342 * 66.20844 * 22 21 11 46 46 H 1.09002 * 109.47263 * 306.20626 * 22 21 11 47 47 H 1.09001 * 109.46957 * 186.21634 * 22 21 11 48 48 H 1.09003 * 109.49916 * 62.32362 * 23 8 7 49 49 H 1.09004 * 109.50427 * 182.43525 * 23 8 7 50 50 H 1.08996 * 109.46206 * 294.17323 * 24 5 4 51 51 H 1.09006 * 109.46537 * 54.15258 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0598 2.8274 0.0000 6 6 5.5081 2.8733 0.2374 7 6 5.9577 4.3296 0.3762 8 6 5.6073 5.0912 -0.9051 9 7 5.9837 6.5033 -0.7554 10 6 7.4291 6.6421 -0.5336 11 6 5.5516 7.2894 -1.9187 12 1 4.4770 7.1717 -2.0580 13 6 5.8721 8.7439 -1.6892 14 1 6.4090 9.0450 -0.8018 15 6 5.4799 9.6902 -2.6120 16 7 4.4757 9.4406 -3.4237 17 14 6.3748 11.3270 -2.7094 18 1 7.5022 11.2184 -3.6698 19 1 5.4331 12.3795 -3.1685 20 1 6.9005 11.6843 -1.3674 21 6 6.2847 6.7966 -3.1680 22 6 5.6830 7.4612 -4.4079 23 6 4.1006 4.9870 -1.1571 24 6 3.7046 3.5117 -1.2498 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9562 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 3.9330 0.9287 -0.8909 33 1 3.9337 0.9284 0.8891 34 1 6.0286 2.4110 -0.6013 35 1 5.7432 2.3318 1.1538 36 1 7.0352 4.3641 0.5368 37 1 5.4480 4.7886 1.2233 38 1 6.1481 4.6573 -1.7462 39 1 7.6704 7.6902 -0.3563 40 1 7.7222 6.0501 0.3334 41 1 7.9673 6.2892 -1.4134 42 1 4.1999 10.1062 -4.0732 43 1 6.1790 5.7147 -3.2483 44 1 7.3414 7.0540 -3.0945 45 1 5.8859 8.5318 -4.3808 46 1 4.6058 7.2958 -4.4222 47 1 6.1287 7.0294 -5.3040 48 1 3.5608 5.4568 -0.3348 49 1 3.8521 5.4910 -2.0911 50 1 4.2334 3.0463 -2.0816 51 1 2.6298 3.4339 -1.4138 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176686.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:02 Heat of formation + Delta-G solvation = 4.911921 kcal Electronic energy + Delta-G solvation = -23945.472435 eV Core-core repulsion = 20879.684412 eV Total energy + Delta-G solvation = -3065.788024 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.32294 -37.28460 -35.22724 -33.55425 -31.51157 -30.81021 -30.14930 -28.26146 -26.68365 -25.42307 -23.56134 -22.64284 -22.25644 -21.52414 -20.69760 -19.91570 -18.38028 -16.42137 -15.75558 -15.66850 -15.01459 -14.70830 -14.42676 -14.21262 -13.87263 -13.77224 -13.57552 -13.25364 -13.01572 -12.74671 -12.49265 -12.23984 -12.00942 -11.88269 -11.61097 -11.42885 -11.21754 -11.05551 -10.92635 -10.87603 -10.77110 -10.67011 -10.61896 -10.54830 -10.19597 -10.14684 -10.07566 -9.93612 -9.58090 -9.24583 -9.05625 -8.17798 -7.75519 -7.03074 -6.07226 -3.90249 3.31850 3.40086 3.43218 3.96443 4.43824 4.74410 4.83293 4.92730 4.98424 5.13083 5.20443 5.22523 5.27714 5.42561 5.49206 5.54338 5.61911 5.68212 5.71004 5.74567 5.80544 5.88218 5.94306 5.97972 6.04281 6.08420 6.18335 6.24490 6.28602 6.35124 6.42920 6.48060 6.49933 6.52720 6.72470 6.78783 6.83158 6.91774 7.10240 7.26544 7.27444 7.34186 7.42313 7.66869 7.88316 8.02521 8.15456 8.36163 8.69056 9.06211 9.61608 10.99906 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.026091 B = 0.003700 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.923423 B = 7565.437869 C = 8094.905681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.118 4.118 4 C 0.056 3.944 5 N -0.537 5.537 6 C 0.061 3.939 7 C -0.109 4.109 8 C 0.085 3.915 9 N -0.528 5.528 10 C 0.033 3.967 11 C 0.208 3.792 12 H 0.056 0.944 13 C -0.509 4.509 14 H 0.063 0.937 15 C 0.069 3.931 16 N -0.867 5.867 17 Si 0.875 3.125 18 H -0.281 1.281 19 H -0.289 1.289 20 H -0.274 1.274 21 C -0.136 4.136 22 C -0.125 4.125 23 C -0.108 4.108 24 C 0.057 3.943 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.028 0.972 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.013 0.987 42 H 0.260 0.740 43 H 0.016 0.984 44 H 0.038 0.962 45 H 0.086 0.914 46 H 0.052 0.948 47 H -0.006 1.006 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.026 0.974 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.296 -16.258 4.884 17.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.156 4.156 4 C -0.072 4.072 5 N -0.261 5.261 6 C -0.068 4.068 7 C -0.147 4.147 8 C -0.024 4.024 9 N -0.251 5.251 10 C -0.116 4.116 11 C 0.101 3.899 12 H 0.073 0.927 13 C -0.547 4.547 14 H 0.082 0.918 15 C -0.133 4.133 16 N -0.505 5.505 17 Si 0.702 3.298 18 H -0.207 1.207 19 H -0.215 1.215 20 H -0.199 1.199 21 C -0.175 4.175 22 C -0.183 4.183 23 C -0.146 4.146 24 C -0.071 4.071 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.035 0.965 44 H 0.057 0.943 45 H 0.105 0.895 46 H 0.071 0.929 47 H 0.013 0.987 48 H 0.095 0.905 49 H 0.093 0.907 50 H 0.044 0.956 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.878 -15.724 5.553 16.922 hybrid contribution 1.412 0.116 -1.683 2.200 sum -1.466 -15.608 3.870 16.147 Atomic orbital electron populations 1.21761 0.95827 1.01337 1.02002 1.21494 0.95925 0.96991 1.01708 1.21646 0.94682 0.96284 1.02980 1.22094 0.95556 0.89337 1.00236 1.61951 1.13864 1.14611 1.35709 1.22059 0.87201 0.97766 0.99733 1.21672 1.00151 0.93393 0.99469 1.21547 0.95348 0.90485 0.95047 1.62374 1.13633 1.06328 1.42774 1.22260 0.89258 1.02132 0.97945 1.19501 0.96057 0.91846 0.82446 0.92654 1.21018 1.36516 0.90677 1.06485 0.91850 1.24768 0.94453 0.97817 0.96293 1.70260 1.22953 1.35091 1.22221 0.86877 0.80296 0.84115 0.78485 1.20743 1.21493 1.19869 1.22258 0.99836 0.95979 0.99463 1.22046 0.99876 1.03281 0.93128 1.21666 0.95856 0.93859 1.03239 1.22169 1.00396 0.95299 0.89193 0.92637 0.92720 0.93001 0.92349 0.92150 0.91031 0.91786 0.95409 0.91204 0.95579 0.91238 0.91986 0.90443 0.95585 0.90890 0.93791 0.96882 0.93003 0.96495 0.94305 0.89524 0.92933 0.98697 0.90482 0.90669 0.95592 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.02 5.93 -26.73 -0.16 -1.18 16 3 C -0.12 -1.19 5.14 -26.73 -0.14 -1.33 16 4 C 0.06 0.62 4.96 -3.83 -0.02 0.60 16 5 N -0.54 -7.27 4.66 -234.67 -1.09 -8.36 16 6 C 0.06 0.81 5.46 -3.84 -0.02 0.79 16 7 C -0.11 -1.67 5.11 -26.65 -0.14 -1.81 16 8 C 0.08 1.54 1.57 -67.59 -0.11 1.44 16 9 N -0.53 -11.24 4.62 -228.15 -1.05 -12.30 16 10 C 0.03 0.64 8.65 60.06 0.52 1.16 16 11 C 0.21 5.05 1.57 -68.86 -0.11 4.94 16 12 H 0.06 1.49 5.92 -51.93 -0.31 1.18 16 13 C -0.51 -13.61 7.87 -34.44 -0.27 -13.88 16 14 H 0.06 1.73 6.60 -52.48 -0.35 1.38 16 15 C 0.07 1.83 3.70 -17.82 -0.07 1.77 16 16 N -0.87 -23.62 9.80 55.43 0.54 -23.07 16 17 Si 0.87 20.79 29.60 -169.99 -5.03 15.76 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 C -0.14 -3.16 4.60 -26.73 -0.12 -3.28 16 22 C -0.13 -3.00 8.24 37.16 0.31 -2.69 16 23 C -0.11 -1.92 4.91 -26.65 -0.13 -2.05 16 24 C 0.06 0.84 5.29 -3.83 -0.02 0.82 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 32 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 33 H 0.07 0.71 7.99 -51.93 -0.41 0.29 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.81 8.02 -51.93 -0.42 0.40 16 36 H 0.06 0.91 6.48 -51.93 -0.34 0.57 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.03 0.51 6.48 -51.93 -0.34 0.17 16 39 H 0.07 1.53 6.38 -51.93 -0.33 1.19 16 40 H 0.04 0.74 6.19 -51.93 -0.32 0.42 16 41 H 0.01 0.25 6.51 -51.93 -0.34 -0.09 16 42 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 43 H 0.02 0.37 6.21 -51.93 -0.32 0.04 16 44 H 0.04 0.91 6.88 -51.93 -0.36 0.56 16 45 H 0.09 2.25 4.73 -51.93 -0.25 2.01 16 46 H 0.05 1.30 7.61 -51.93 -0.39 0.90 16 47 H -0.01 -0.13 8.14 -51.93 -0.42 -0.55 16 48 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 49 H 0.07 1.48 6.41 -51.93 -0.33 1.14 16 50 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.07 1.02 6.21 -51.93 -0.32 0.70 16 LS Contribution 363.95 15.07 5.48 5.48 Total: -1.00 -26.74 363.95 -10.92 -37.66 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -9.67 Total: 0.35 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -0.10 Total: -15.53 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -1.60 Total: -43.73 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -26.74 -10.92 -37.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176686.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.568 kcal (2) G-P(sol) polarization free energy of solvation -26.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds