Wall clock time and date at job start Tue Mar 31 2020 06:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46904 * 109.47000 * 2 1 4 4 C 1.46904 * 110.99452 * 297.01411 * 3 2 1 5 5 C 1.52999 * 109.47415 * 288.24600 * 4 3 2 6 6 C 1.46897 * 110.99971 * 60.96915 * 3 2 1 7 7 C 1.53003 * 109.47180 * 66.05015 * 6 3 2 8 8 C 1.53004 * 109.46780 * 179.97438 * 7 6 3 9 9 H 1.08993 * 109.47167 * 54.99646 * 8 7 6 10 10 C 1.52999 * 109.46616 * 174.99861 * 8 7 6 11 11 N 1.46898 * 109.47144 * 294.99536 * 8 7 6 12 12 C 1.46904 * 110.99967 * 155.00248 * 11 8 7 13 13 H 1.08993 * 109.41083 * 35.00048 * 12 11 8 14 14 C 1.52956 * 109.40954 * 154.86063 * 12 11 8 15 15 C 1.53235 * 109.39814 * 183.70488 * 14 12 11 16 16 C 1.51271 * 108.53711 * 305.37189 * 15 14 12 17 17 C 1.37880 * 120.84667 * 231.36897 * 16 15 14 18 18 N 1.31508 * 120.00289 * 0.02562 * 17 16 15 19 19 Si 1.86799 * 119.99893 * 180.02562 * 17 16 15 20 20 H 1.48496 * 109.47573 * 89.99908 * 19 17 16 21 21 H 1.48496 * 109.47422 * 210.00360 * 19 17 16 22 22 H 1.48506 * 109.46927 * 330.00161 * 19 17 16 23 23 C 1.51263 * 118.30153 * 51.34913 * 16 15 14 24 24 C 1.52960 * 109.41214 * 275.14217 * 12 11 8 25 25 H 1.09007 * 109.47591 * 301.31248 * 1 2 3 26 26 H 1.08998 * 109.47034 * 61.31625 * 1 2 3 27 27 H 1.09001 * 109.46942 * 181.31315 * 1 2 3 28 28 H 1.08999 * 109.47571 * 239.99442 * 2 1 3 29 29 H 1.08999 * 109.47324 * 119.99405 * 2 1 3 30 30 H 1.08997 * 109.46991 * 48.25218 * 4 3 2 31 31 H 1.09007 * 109.46548 * 168.24918 * 4 3 2 32 32 H 1.09000 * 109.46937 * 299.85553 * 5 4 3 33 33 H 1.08998 * 109.46605 * 59.84762 * 5 4 3 34 34 H 1.08997 * 109.47305 * 179.85057 * 5 4 3 35 35 H 1.08997 * 109.47541 * 306.04455 * 6 3 2 36 36 H 1.09008 * 109.46797 * 186.05066 * 6 3 2 37 37 H 1.08997 * 109.47143 * 59.99832 * 7 6 3 38 38 H 1.09000 * 109.46514 * 299.99523 * 7 6 3 39 39 H 1.09005 * 109.47130 * 59.99922 * 10 8 7 40 40 H 1.08998 * 109.47309 * 300.00101 * 10 8 7 41 41 H 1.09002 * 109.46516 * 179.97438 * 10 8 7 42 42 H 1.00906 * 111.00223 * 31.04872 * 11 8 7 43 43 H 1.08994 * 109.48597 * 303.67766 * 14 12 11 44 44 H 1.09003 * 109.48511 * 63.73408 * 14 12 11 45 45 H 1.09000 * 109.63075 * 65.08931 * 15 14 12 46 46 H 1.09001 * 109.62433 * 185.65604 * 15 14 12 47 47 H 0.97003 * 120.00309 * 180.02562 * 18 17 16 48 48 H 1.09005 * 109.62432 * 68.36432 * 23 16 15 49 49 H 1.08992 * 109.62588 * 188.74415 * 23 16 15 50 50 H 1.09004 * 109.48271 * 296.27318 * 24 12 11 51 51 H 1.09006 * 109.48003 * 56.31996 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6077 2.0889 -1.2219 5 6 2.4055 1.5535 -2.4125 6 6 1.5676 2.1032 1.1991 7 6 2.2192 1.4868 2.4387 8 6 1.7489 2.2353 3.6875 9 1 0.6595 2.2342 3.7230 10 6 2.3007 1.5427 4.9351 11 7 2.2358 3.6204 3.6406 12 6 1.3766 4.5077 4.4361 13 1 1.0114 3.9696 5.3108 14 6 2.1841 5.7254 4.8887 15 6 1.3151 6.6041 5.7947 16 6 0.0388 6.9418 5.0563 17 6 -0.3889 8.2479 4.9445 18 7 0.3156 9.2189 5.4832 19 14 -1.9692 8.6380 4.0280 20 1 -3.1120 8.6061 4.9757 21 1 -1.8681 9.9888 3.4197 22 1 -2.1838 7.6289 2.9598 23 6 -0.7560 5.8102 4.4433 24 6 0.1889 4.9616 3.5858 25 1 -0.3634 0.5341 0.8780 26 1 -0.3633 0.4932 -0.9015 27 1 -0.3633 -1.0274 0.0236 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 0.5439 1.9255 -1.3942 31 1 1.7975 3.1562 -1.1078 32 1 3.4691 1.7193 -2.2413 33 1 2.2178 0.4856 -2.5248 34 1 2.0980 2.0739 -3.3195 35 1 0.4835 2.0258 1.2820 36 1 1.8521 3.1527 1.1228 37 1 3.3033 1.5643 2.3558 38 1 1.9346 0.4374 2.5148 39 1 3.3902 1.5439 4.8995 40 1 1.9395 0.5149 4.9699 41 1 1.9660 2.0762 5.8248 42 1 2.3087 3.9461 2.6884 43 1 3.0641 5.3938 5.4397 44 1 2.4960 6.2995 4.0162 45 1 1.0762 6.0627 6.7100 46 1 1.8510 7.5216 6.0380 47 1 0.0145 10.1377 5.4049 48 1 -1.1866 5.1952 5.2336 49 1 -1.5529 6.2175 3.8211 50 1 0.5493 5.5542 2.7449 51 1 -0.3460 4.0882 3.2128 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255942040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:46 Heat of formation + Delta-G solvation = -22.891777 kcal Electronic energy + Delta-G solvation = -23725.272990 eV Core-core repulsion = 20658.279308 eV Total energy + Delta-G solvation = -3066.993682 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.07129 -37.78886 -35.41197 -32.57059 -31.65662 -30.69328 -29.71709 -29.41495 -27.51828 -26.14714 -24.49043 -22.84011 -21.76244 -21.18645 -20.16626 -19.66321 -19.26378 -16.44926 -16.36696 -16.01862 -15.39297 -14.62970 -14.41200 -14.31491 -14.23927 -13.39121 -13.23477 -13.04299 -12.86812 -12.75274 -12.54921 -12.30418 -12.22326 -12.10346 -11.94324 -11.85922 -11.67419 -11.45819 -11.29230 -11.05704 -10.95053 -10.89334 -10.76511 -10.67037 -10.38058 -10.23866 -10.08099 -9.74861 -9.49417 -8.82033 -8.69666 -8.44719 -8.40675 -7.71972 -6.06094 -3.96367 3.27118 3.35305 3.35701 3.74708 4.39903 4.61035 4.71646 4.75855 4.99723 5.03084 5.11078 5.16255 5.18817 5.21646 5.26904 5.36740 5.43779 5.48739 5.61933 5.72174 5.77442 5.79952 5.82280 5.84510 5.91775 5.93633 5.99089 6.06613 6.10890 6.15555 6.25369 6.36090 6.47644 6.55840 6.78863 6.85894 6.94177 6.95966 6.96328 7.02201 7.08917 7.26028 7.42691 7.65786 7.73132 7.78874 7.93170 8.00581 8.45405 9.02311 9.58411 11.03536 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.004110 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.788447 B = 6810.765176 C = 7629.210458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.045 3.955 3 N -0.534 5.534 4 C 0.042 3.958 5 C -0.145 4.145 6 C 0.047 3.953 7 C -0.114 4.114 8 C 0.083 3.917 9 H 0.039 0.961 10 C -0.136 4.136 11 N -0.685 5.685 12 C 0.100 3.900 13 H 0.064 0.936 14 C -0.092 4.092 15 C 0.008 3.992 16 C -0.484 4.484 17 C 0.075 3.925 18 N -0.891 5.891 19 Si 0.885 3.115 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.266 1.266 23 C -0.017 4.017 24 C -0.131 4.131 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.334 0.666 43 H 0.035 0.965 44 H 0.046 0.954 45 H 0.001 0.999 46 H 0.056 0.944 47 H 0.263 0.737 48 H 0.014 0.986 49 H 0.031 0.969 50 H 0.050 0.950 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.228 -17.222 -10.972 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.083 4.083 3 N -0.257 5.257 4 C -0.085 4.085 5 C -0.203 4.203 6 C -0.081 4.081 7 C -0.152 4.152 8 C -0.027 4.027 9 H 0.057 0.943 10 C -0.194 4.194 11 N -0.317 5.317 12 C -0.009 4.009 13 H 0.082 0.918 14 C -0.131 4.131 15 C -0.029 4.029 16 C -0.503 4.503 17 C -0.127 4.127 18 N -0.529 5.529 19 Si 0.713 3.287 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.192 1.192 23 C -0.056 4.056 24 C -0.170 4.170 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.153 0.847 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.020 0.980 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.032 0.968 49 H 0.049 0.951 50 H 0.069 0.931 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.233 -17.125 -10.440 20.315 hybrid contribution -2.676 0.430 -1.138 2.940 sum 0.557 -16.695 -11.577 20.324 Atomic orbital electron populations 1.22437 0.98500 1.02258 1.02238 1.22202 0.92738 0.90640 1.02672 1.62268 1.59383 1.02170 1.01918 1.22153 0.97592 0.98651 0.90148 1.21754 1.01108 1.00769 0.96668 1.22267 0.97717 0.98325 0.89779 1.21749 1.01919 0.99026 0.92502 1.21450 0.96986 0.89770 0.94535 0.94322 1.21759 1.01559 0.98543 0.97553 1.60870 1.52867 1.00964 1.17003 1.21507 0.91225 0.93181 0.94991 0.91804 1.21562 0.96979 0.94800 0.99742 1.19397 0.94412 0.95868 0.93256 1.20063 1.06942 0.90125 1.33161 1.24840 0.96650 0.95844 0.95415 1.69837 1.38370 0.99871 1.44816 0.86719 0.84167 0.77115 0.80663 1.20496 1.21666 1.19185 1.19762 0.94990 0.95845 0.94955 1.22198 0.97977 0.97722 0.99138 0.92112 0.92502 0.92189 0.90828 0.90466 0.94406 0.90847 0.91883 0.92939 0.92555 0.94441 0.90642 0.90390 0.91831 0.92224 0.93398 0.92615 0.84675 0.94582 0.93564 0.98032 0.92508 0.92683 0.96775 0.95084 0.93141 0.95704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.73 9.28 37.15 0.34 -1.38 16 2 C 0.05 0.41 5.70 -3.82 -0.02 0.39 16 3 N -0.53 -5.63 4.67 -234.62 -1.10 -6.73 16 4 C 0.04 0.42 5.56 -3.82 -0.02 0.40 16 5 C -0.15 -1.22 9.96 37.16 0.37 -0.85 16 6 C 0.05 0.54 4.56 -3.82 -0.02 0.53 16 7 C -0.11 -1.32 4.73 -26.73 -0.13 -1.44 16 8 C 0.08 1.14 2.45 -67.71 -0.17 0.97 16 9 H 0.04 0.58 7.08 -51.93 -0.37 0.21 16 10 C -0.14 -1.77 9.40 37.16 0.35 -1.42 16 11 N -0.69 -11.03 6.05 -99.79 -0.60 -11.64 16 12 C 0.10 1.92 2.18 -67.75 -0.15 1.77 16 13 H 0.06 1.28 7.11 -51.93 -0.37 0.91 16 14 C -0.09 -2.02 5.54 -26.63 -0.15 -2.16 16 15 C 0.01 0.22 5.97 -27.48 -0.16 0.05 16 16 C -0.48 -12.87 5.51 -98.92 -0.55 -13.42 16 17 C 0.07 2.07 5.46 -17.82 -0.10 1.97 16 18 N -0.89 -25.97 12.73 55.43 0.71 -25.27 16 19 Si 0.88 21.28 27.53 -169.99 -4.68 16.60 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.20 6.11 56.52 0.35 -5.86 16 23 C -0.02 -0.41 5.60 -27.48 -0.15 -0.56 16 24 C -0.13 -2.65 5.17 -26.63 -0.14 -2.79 16 25 H 0.06 0.61 6.23 -51.93 -0.32 0.28 16 26 H 0.06 0.51 6.30 -51.93 -0.33 0.18 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.61 6.58 -51.93 -0.34 0.27 16 29 H 0.08 0.69 6.43 -51.93 -0.33 0.36 16 30 H 0.04 0.37 5.91 -51.93 -0.31 0.06 16 31 H 0.07 0.76 7.81 -51.93 -0.41 0.35 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.41 6.70 -51.93 -0.35 0.07 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.04 0.46 6.00 -51.93 -0.31 0.15 16 36 H 0.08 0.95 6.15 -51.92 -0.32 0.64 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.67 6.53 -51.93 -0.34 0.33 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.80 7.42 -51.93 -0.39 0.41 16 42 H 0.33 5.24 6.22 -39.29 -0.24 5.00 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 46 H 0.06 1.58 7.07 -51.93 -0.37 1.21 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.03 0.73 4.59 -51.93 -0.24 0.49 16 50 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.02 0.45 7.37 -51.93 -0.38 0.07 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -27.57 367.74 -10.37 -37.94 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -9.55 Total: 1.49 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -0.68 Total: -17.94 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.99 Total: -43.63 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.68 Total: 16.60 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.57 -10.37 -37.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255942040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.050 kcal (2) G-P(sol) polarization free energy of solvation -27.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds