Wall clock time and date at job start Tue Mar 31 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47315 * 2 1 4 4 C 1.46899 * 111.00054 * 297.12660 * 3 2 1 5 5 C 1.53000 * 109.47056 * 286.48898 * 4 3 2 6 6 C 1.46897 * 110.99593 * 61.08234 * 3 2 1 7 7 C 1.52996 * 109.47425 * 66.04442 * 6 3 2 8 8 C 1.53006 * 109.47244 * 179.97438 * 7 6 3 9 9 H 1.09002 * 109.46861 * 54.99881 * 8 7 6 10 10 C 1.53000 * 109.47194 * 174.99907 * 8 7 6 11 11 N 1.46899 * 109.47296 * 295.00097 * 8 7 6 12 12 C 1.46897 * 111.00213 * 154.99792 * 11 8 7 13 13 H 1.09004 * 109.41012 * 34.99941 * 12 11 8 14 14 C 1.52951 * 109.41521 * 154.85666 * 12 11 8 15 15 C 1.53232 * 109.40592 * 183.70204 * 14 12 11 16 16 C 1.51260 * 108.53737 * 305.37803 * 15 14 12 17 17 C 1.37882 * 120.84940 * 231.32177 * 16 15 14 18 18 N 1.31520 * 119.99713 * 10.63889 * 17 16 15 19 19 Si 1.86791 * 120.00381 * 190.64065 * 17 16 15 20 20 H 1.48505 * 109.47096 * 5.21714 * 19 17 16 21 21 H 1.48500 * 109.47605 * 125.21565 * 19 17 16 22 22 H 1.48497 * 109.47197 * 245.22090 * 19 17 16 23 23 C 1.51269 * 118.30385 * 51.34692 * 16 15 14 24 24 C 1.52959 * 109.41601 * 275.14369 * 12 11 8 25 25 H 1.08998 * 109.47451 * 63.53853 * 1 2 3 26 26 H 1.09003 * 109.47559 * 183.55063 * 1 2 3 27 27 H 1.09006 * 109.46832 * 303.54333 * 1 2 3 28 28 H 1.09003 * 109.46690 * 240.00330 * 2 1 3 29 29 H 1.08998 * 109.47045 * 120.00893 * 2 1 3 30 30 H 1.08994 * 109.47035 * 46.49062 * 4 3 2 31 31 H 1.09002 * 109.46692 * 166.48665 * 4 3 2 32 32 H 1.09002 * 109.47180 * 296.21406 * 5 4 3 33 33 H 1.09000 * 109.46925 * 56.21796 * 5 4 3 34 34 H 1.09001 * 109.46738 * 176.21382 * 5 4 3 35 35 H 1.09007 * 109.46848 * 186.04579 * 6 3 2 36 36 H 1.09006 * 109.47163 * 306.04087 * 6 3 2 37 37 H 1.08998 * 109.47308 * 299.99862 * 7 6 3 38 38 H 1.08996 * 109.47301 * 59.99906 * 7 6 3 39 39 H 1.08996 * 109.47292 * 180.02562 * 10 8 7 40 40 H 1.09007 * 109.46779 * 300.00065 * 10 8 7 41 41 H 1.09000 * 109.46753 * 60.00054 * 10 8 7 42 42 H 1.00898 * 110.99993 * 278.95767 * 11 8 7 43 43 H 1.08998 * 109.48473 * 303.68978 * 14 12 11 44 44 H 1.09006 * 109.47939 * 63.71306 * 14 12 11 45 45 H 1.09005 * 109.61853 * 65.09408 * 15 14 12 46 46 H 1.08999 * 109.62700 * 185.46723 * 15 14 12 47 47 H 0.97000 * 119.99806 * 180.02562 * 18 17 16 48 48 H 1.08992 * 109.62562 * 68.36714 * 23 16 15 49 49 H 1.09004 * 109.62490 * 188.74831 * 23 16 15 50 50 H 1.09001 * 109.48190 * 296.27656 * 24 12 11 51 51 H 1.09004 * 109.48054 * 56.31029 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6057 2.0898 -1.2206 5 6 2.4321 1.5860 -2.4056 6 6 1.5700 2.1023 1.2004 7 6 2.2237 1.4850 2.4384 8 6 1.7557 2.2326 3.6886 9 1 0.6663 2.2314 3.7261 10 6 2.3096 1.5390 4.9348 11 7 2.2425 3.6178 3.6419 12 6 1.3849 4.5044 4.4395 13 1 1.0212 3.9657 5.3145 14 6 2.1931 5.7217 4.8917 15 6 1.3258 6.5999 5.7998 16 6 0.0482 6.9382 5.0639 17 6 -0.3801 8.2442 4.9546 18 7 0.4177 9.2294 5.3048 19 14 -2.0935 8.6143 4.3092 20 1 -2.8316 7.3418 4.1063 21 1 -2.8212 9.4574 5.2915 22 1 -1.9899 9.3379 3.0166 23 6 -0.7478 5.8070 4.4516 24 6 0.1956 4.9591 3.5918 25 1 -0.3634 0.4579 -0.9200 26 1 -0.3634 -1.0257 0.0636 27 1 -0.3633 0.5679 0.8566 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5140 0.8899 30 1 0.5488 1.9010 -1.4083 31 1 1.7667 3.1604 -1.0942 32 1 3.4816 1.8348 -2.2486 33 1 2.3237 0.5047 -2.4905 34 1 2.0795 2.0596 -3.3218 35 1 1.8544 3.1518 1.1245 36 1 0.4860 2.0249 1.2852 37 1 1.9392 0.4355 2.5144 38 1 3.3076 1.5624 2.3536 39 1 1.9759 2.0713 5.8255 40 1 1.9483 0.5112 4.9694 41 1 3.3990 1.5402 4.8972 42 1 3.2029 3.6739 3.9461 43 1 3.0741 5.3896 5.4408 44 1 2.5038 6.2963 4.0190 45 1 1.0886 6.0577 6.7152 46 1 1.8635 7.5156 6.0456 47 1 0.1162 10.1482 5.2283 48 1 -1.1770 5.1915 5.2421 49 1 -1.5457 6.2148 3.8310 50 1 0.5544 5.5522 2.7506 51 1 -0.3399 4.0859 3.2190 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255942042.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:51 Heat of formation + Delta-G solvation = -22.782596 kcal Electronic energy + Delta-G solvation = -23690.224415 eV Core-core repulsion = 20623.235467 eV Total energy + Delta-G solvation = -3066.988948 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.85140 -37.75984 -35.40234 -32.54727 -31.59853 -30.73464 -29.73136 -29.18508 -27.38218 -26.16914 -24.35554 -22.80047 -21.74927 -21.37012 -20.05802 -19.59197 -19.06991 -16.24403 -16.15126 -15.94613 -15.27582 -14.77071 -14.39054 -14.23092 -13.72222 -13.56091 -13.28179 -13.09383 -12.86919 -12.66657 -12.56255 -12.38511 -12.19646 -12.09086 -11.93971 -11.75850 -11.59610 -11.31881 -11.30718 -10.93284 -10.88418 -10.80146 -10.66748 -10.57509 -10.30525 -10.22454 -10.01341 -9.84384 -9.39315 -8.84107 -8.60770 -8.35603 -8.23812 -7.81301 -6.07164 -3.94029 3.28288 3.38356 3.40327 3.91986 4.42335 4.60877 4.82326 4.94134 5.07074 5.14582 5.20129 5.21106 5.29279 5.32498 5.40075 5.45868 5.51453 5.54519 5.64047 5.78027 5.82469 5.87458 5.88633 5.91853 5.96329 5.97105 6.02567 6.11582 6.18363 6.25092 6.37533 6.39959 6.45813 6.62912 6.76779 6.87106 6.97190 7.03470 7.12905 7.14689 7.16174 7.20397 7.51774 7.65877 7.74907 7.80924 7.89876 7.98160 8.45075 9.02161 9.59657 11.02759 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017768 B = 0.004065 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.516761 B = 6886.334987 C = 7650.813487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.046 3.954 3 N -0.538 5.538 4 C 0.044 3.956 5 C -0.145 4.145 6 C 0.058 3.942 7 C -0.097 4.097 8 C 0.083 3.917 9 H 0.073 0.927 10 C -0.179 4.179 11 N -0.683 5.683 12 C 0.101 3.899 13 H 0.030 0.970 14 C -0.107 4.107 15 C 0.011 3.989 16 C -0.485 4.485 17 C 0.076 3.924 18 N -0.889 5.889 19 Si 0.880 3.120 20 H -0.260 1.260 21 H -0.287 1.287 22 H -0.283 1.283 23 C -0.021 4.021 24 C -0.088 4.088 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.032 0.968 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.333 0.667 43 H 0.024 0.976 44 H 0.057 0.943 45 H -0.001 1.001 46 H 0.056 0.944 47 H 0.262 0.738 48 H 0.009 0.991 49 H 0.034 0.966 50 H 0.055 0.945 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 -17.123 -9.191 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.082 4.082 3 N -0.261 5.261 4 C -0.084 4.084 5 C -0.202 4.202 6 C -0.069 4.069 7 C -0.135 4.135 8 C -0.029 4.029 9 H 0.091 0.909 10 C -0.238 4.238 11 N -0.313 5.313 12 C -0.007 4.007 13 H 0.048 0.952 14 C -0.145 4.145 15 C -0.027 4.027 16 C -0.504 4.504 17 C -0.126 4.126 18 N -0.526 5.526 19 Si 0.708 3.292 20 H -0.185 1.185 21 H -0.213 1.213 22 H -0.210 1.210 23 C -0.059 4.059 24 C -0.126 4.126 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.151 0.849 43 H 0.043 0.957 44 H 0.076 0.924 45 H 0.017 0.983 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.028 0.972 49 H 0.052 0.948 50 H 0.074 0.926 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.021 -16.775 -9.773 19.647 hybrid contribution -1.573 0.035 0.599 1.684 sum 1.448 -16.740 -9.174 19.143 Atomic orbital electron populations 1.22438 0.98621 1.02075 1.02270 1.22180 0.92665 0.91053 1.02330 1.62273 1.59493 1.02022 1.02353 1.22121 0.97309 0.98788 0.90180 1.21753 1.00878 1.00847 0.96758 1.22142 0.97079 0.99230 0.88455 1.21518 1.01134 0.97646 0.93237 1.21554 0.99558 0.88805 0.92934 0.90855 1.22478 1.01170 1.00817 0.99341 1.60730 1.05911 1.05491 1.59172 1.21419 0.93785 0.92417 0.93087 0.95226 1.21774 0.96423 0.96085 1.00207 1.19357 0.94536 0.95719 0.93042 1.20019 1.06406 0.90218 1.33791 1.24833 0.96951 0.95740 0.95109 1.69884 1.35151 0.99217 1.48392 0.86766 0.85637 0.78249 0.78560 1.18485 1.21293 1.20959 1.19861 0.95102 0.95785 0.95130 1.21507 0.95386 0.97285 0.98439 0.92580 0.92414 0.91980 0.91146 0.90697 0.94528 0.90800 0.92072 0.93002 0.92737 0.89137 0.94977 0.92688 0.91462 0.92600 0.92758 0.92680 0.84859 0.95712 0.92409 0.98285 0.92549 0.92762 0.97223 0.94795 0.92636 0.95616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 9.28 37.16 0.34 -1.50 16 2 C 0.05 0.45 5.72 -3.82 -0.02 0.43 16 3 N -0.54 -6.15 4.66 -234.63 -1.09 -7.24 16 4 C 0.04 0.47 5.57 -3.82 -0.02 0.45 16 5 C -0.14 -1.32 10.04 37.16 0.37 -0.95 16 6 C 0.06 0.74 4.61 -3.83 -0.02 0.72 16 7 C -0.10 -1.16 4.82 -26.73 -0.13 -1.29 16 8 C 0.08 1.11 2.39 -67.71 -0.16 0.95 16 9 H 0.07 1.09 7.08 -51.93 -0.37 0.72 16 10 C -0.18 -2.16 9.15 37.16 0.34 -1.82 16 11 N -0.68 -10.69 5.51 -99.79 -0.55 -11.24 16 12 C 0.10 1.93 2.21 -67.76 -0.15 1.78 16 13 H 0.03 0.59 7.11 -51.93 -0.37 0.22 16 14 C -0.11 -2.27 5.24 -26.64 -0.14 -2.41 16 15 C 0.01 0.29 5.98 -27.49 -0.16 0.12 16 16 C -0.49 -12.89 5.48 -98.93 -0.54 -13.43 16 17 C 0.08 2.10 5.44 -17.82 -0.10 2.00 16 18 N -0.89 -25.81 12.77 55.43 0.71 -25.10 16 19 Si 0.88 21.14 27.74 -169.99 -4.72 16.42 16 20 H -0.26 -6.02 5.90 56.52 0.33 -5.69 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.02 -0.49 5.52 -27.48 -0.15 -0.64 16 24 C -0.09 -1.82 5.43 -26.63 -0.14 -1.96 16 25 H 0.06 0.53 6.38 -51.93 -0.33 0.20 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.66 6.12 -51.93 -0.32 0.34 16 28 H 0.07 0.64 6.61 -51.93 -0.34 0.29 16 29 H 0.07 0.72 6.42 -51.93 -0.33 0.39 16 30 H 0.04 0.39 5.89 -51.93 -0.31 0.08 16 31 H 0.07 0.85 7.78 -51.93 -0.40 0.45 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.45 6.65 -51.93 -0.35 0.10 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.09 1.34 7.46 -51.92 -0.39 0.96 16 36 H 0.03 0.43 5.96 -51.93 -0.31 0.12 16 37 H 0.05 0.60 6.53 -51.93 -0.34 0.26 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.74 7.42 -51.93 -0.39 0.36 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 42 H 0.33 5.00 8.03 -39.29 -0.32 4.68 16 43 H 0.02 0.47 8.05 -51.93 -0.42 0.05 16 44 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 46 H 0.06 1.55 7.08 -51.93 -0.37 1.18 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 48 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 49 H 0.03 0.80 4.72 -51.93 -0.25 0.56 16 50 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 51 H 0.03 0.48 7.37 -51.93 -0.38 0.10 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -27.26 370.07 -10.45 -37.72 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -9.70 Total: 1.41 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -0.68 Total: -17.55 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.93 Total: -43.58 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.72 Total: 16.42 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.26 -10.45 -37.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255942042.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.933 kcal (2) G-P(sol) polarization free energy of solvation -27.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds