Wall clock time and date at job start Tue Mar 31 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46897 * 109.47266 * 2 1 4 4 C 1.46903 * 110.99768 * 66.04849 * 3 2 1 5 5 C 1.52999 * 109.46708 * 199.58835 * 4 3 2 6 6 C 1.46899 * 110.99779 * 189.99615 * 3 2 1 7 7 C 1.53006 * 109.46681 * 75.75163 * 6 3 2 8 8 C 1.53001 * 109.46904 * 174.82121 * 7 6 3 9 9 H 1.08996 * 109.47451 * 305.00271 * 8 7 6 10 10 C 1.53003 * 109.46778 * 185.00022 * 8 7 6 11 11 N 1.46898 * 109.46847 * 65.00239 * 8 7 6 12 12 C 1.46905 * 110.99908 * 204.99476 * 11 8 7 13 13 H 1.09000 * 109.41572 * 324.86217 * 12 11 8 14 14 C 1.52966 * 109.41015 * 84.64793 * 12 11 8 15 15 C 1.53223 * 109.40277 * 183.70249 * 14 12 11 16 16 C 1.51266 * 108.54065 * 305.37354 * 15 14 12 17 17 C 1.37875 * 120.85144 * 231.37022 * 16 15 14 18 18 N 1.31517 * 120.00144 * 179.97438 * 17 16 15 19 19 Si 1.86799 * 119.99889 * 359.97438 * 17 16 15 20 20 H 1.48502 * 109.46962 * 90.00391 * 19 17 16 21 21 H 1.48507 * 109.46752 * 209.99997 * 19 17 16 22 22 H 1.48497 * 109.47152 * 329.99833 * 19 17 16 23 23 C 1.51272 * 118.29936 * 51.34779 * 16 15 14 24 24 C 1.52956 * 109.41269 * 205.00018 * 12 11 8 25 25 H 1.09000 * 109.47510 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47179 * 299.99999 * 1 2 3 27 27 H 1.08996 * 109.46995 * 59.99624 * 1 2 3 28 28 H 1.08999 * 109.46822 * 239.99732 * 2 1 3 29 29 H 1.09005 * 109.47118 * 120.00576 * 2 1 3 30 30 H 1.08996 * 109.46975 * 319.58813 * 4 3 2 31 31 H 1.08996 * 109.47019 * 79.58886 * 4 3 2 32 32 H 1.08999 * 109.47570 * 54.83755 * 5 4 3 33 33 H 1.08999 * 109.46681 * 174.84058 * 5 4 3 34 34 H 1.09006 * 109.47050 * 294.83361 * 5 4 3 35 35 H 1.08991 * 109.47609 * 315.75466 * 6 3 2 36 36 H 1.08996 * 109.47106 * 195.74820 * 6 3 2 37 37 H 1.09000 * 109.46942 * 54.82858 * 7 6 3 38 38 H 1.08996 * 109.47159 * 294.82517 * 7 6 3 39 39 H 1.09003 * 109.46803 * 180.02562 * 10 8 7 40 40 H 1.08999 * 109.47088 * 299.99862 * 10 8 7 41 41 H 1.08996 * 109.47222 * 60.00958 * 10 8 7 42 42 H 1.00900 * 110.99907 * 81.04605 * 11 8 7 43 43 H 1.08998 * 109.48049 * 303.68734 * 14 12 11 44 44 H 1.08999 * 109.48153 * 63.72390 * 14 12 11 45 45 H 1.08998 * 109.62532 * 185.65916 * 15 14 12 46 46 H 1.09006 * 109.62516 * 65.08818 * 15 14 12 47 47 H 0.97001 * 120.00358 * 179.97438 * 18 17 16 48 48 H 1.09000 * 109.62801 * 188.93874 * 23 16 15 49 49 H 1.09001 * 109.62801 * 68.36424 * 23 16 15 50 50 H 1.09001 * 109.48632 * 296.27415 * 24 12 11 51 51 H 1.08997 * 109.48348 * 56.32036 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0668 1.2534 5 6 1.7416 3.5812 1.0470 6 6 3.4685 1.4310 -0.2381 7 6 3.7503 1.1736 -1.7198 8 6 5.2455 1.3488 -1.9925 9 1 5.5634 2.3350 -1.6546 10 6 5.5093 1.2144 -3.4936 11 7 5.9995 0.3166 -1.2685 12 6 7.3749 0.7587 -1.0025 13 1 7.7288 1.3640 -1.8370 14 6 7.4013 1.5954 0.2778 15 6 8.8179 2.1333 0.5053 16 6 9.7813 0.9671 0.5029 17 6 10.6832 0.7930 1.5311 18 7 11.5129 -0.2272 1.5123 19 14 10.7266 2.0062 2.9508 20 1 9.8000 1.5519 4.0187 21 1 12.1069 2.0841 3.4932 22 1 10.3077 3.3470 2.4692 23 6 9.7295 -0.0036 -0.6562 24 6 8.2797 -0.4640 -0.8416 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.6590 1.7877 1.5491 31 1 2.3714 1.7731 2.0345 32 1 1.1094 3.8634 0.2052 33 1 1.3945 4.0873 1.9479 34 1 2.7719 3.8717 0.8412 35 1 3.9601 0.6664 0.3633 36 1 3.8513 2.4131 0.0393 37 1 3.1851 1.8820 -2.3254 38 1 3.4509 0.1572 -1.9753 39 1 6.5746 1.3387 -3.6879 40 1 5.1914 0.2280 -3.8315 41 1 4.9499 1.9803 -4.0308 42 1 5.9917 -0.5573 -1.7728 43 1 6.7067 2.4298 0.1810 44 1 7.1080 0.9743 1.1241 45 1 8.8651 2.6452 1.4664 46 1 9.0794 2.8258 -0.2948 47 1 12.1478 -0.3495 2.2355 48 1 10.3624 -0.8646 -0.4413 49 1 10.0753 0.4911 -1.5638 50 1 7.9657 -1.0364 0.0313 51 1 8.2079 -1.0891 -1.7316 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255942044.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:53 Heat of formation + Delta-G solvation = -28.447778 kcal Electronic energy + Delta-G solvation = -23635.968347 eV Core-core repulsion = 20568.733738 eV Total energy + Delta-G solvation = -3067.234609 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.64502 -37.66482 -35.40278 -32.51061 -31.87186 -30.96448 -29.76044 -29.18611 -27.41531 -26.17367 -23.27857 -23.02604 -21.83158 -21.38659 -20.32540 -19.94518 -19.10154 -16.11347 -15.86023 -15.60072 -15.36336 -14.73509 -14.47034 -14.35815 -14.01635 -13.62576 -13.41536 -12.96174 -12.87586 -12.64147 -12.43333 -12.26766 -12.13377 -12.06729 -11.83952 -11.72960 -11.53280 -11.48630 -11.20251 -11.07149 -10.95072 -10.77766 -10.69828 -10.46731 -10.31366 -10.25143 -10.03964 -9.89421 -9.48523 -8.86416 -8.57504 -8.43300 -8.30621 -7.82036 -6.06602 -3.96352 3.29225 3.37543 3.39427 3.87928 4.41566 4.61384 4.84943 4.91080 5.10566 5.12976 5.22067 5.28655 5.32504 5.37394 5.43886 5.47759 5.55343 5.63164 5.72934 5.81333 5.83364 5.87169 5.89323 5.90915 5.93958 5.96392 6.06978 6.12342 6.17233 6.23440 6.31424 6.41393 6.42757 6.60060 6.73665 6.84274 6.93328 7.01303 7.10842 7.14379 7.14995 7.16670 7.49922 7.64968 7.73008 7.79130 7.88558 7.95673 8.43643 9.01134 9.58822 11.03309 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.004092 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.168326 B = 6840.636146 C = 7635.312447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 N -0.543 5.543 4 C 0.045 3.955 5 C -0.146 4.146 6 C 0.061 3.939 7 C -0.094 4.094 8 C 0.082 3.918 9 H 0.075 0.925 10 C -0.179 4.179 11 N -0.684 5.684 12 C 0.102 3.898 13 H 0.031 0.969 14 C -0.089 4.089 15 C -0.017 4.017 16 C -0.484 4.484 17 C 0.074 3.926 18 N -0.892 5.892 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.268 1.268 23 C 0.012 3.988 24 C -0.107 4.107 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.332 0.668 43 H 0.027 0.973 44 H 0.054 0.946 45 H 0.028 0.972 46 H 0.013 0.987 47 H 0.263 0.737 48 H 0.056 0.944 49 H 0.000 1.000 50 H 0.056 0.944 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.914 2.559 -4.575 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 N -0.268 5.268 4 C -0.082 4.082 5 C -0.203 4.203 6 C -0.066 4.066 7 C -0.133 4.133 8 C -0.029 4.029 9 H 0.094 0.906 10 C -0.238 4.238 11 N -0.315 5.315 12 C -0.007 4.007 13 H 0.049 0.951 14 C -0.128 4.128 15 C -0.055 4.055 16 C -0.503 4.503 17 C -0.128 4.128 18 N -0.530 5.530 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.193 1.193 23 C -0.026 4.026 24 C -0.146 4.146 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.150 0.850 43 H 0.045 0.955 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.031 0.969 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.019 0.981 50 H 0.074 0.926 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -19.229 2.903 -4.224 19.901 hybrid contribution 0.908 0.058 0.580 1.079 sum -18.321 2.962 -3.645 18.913 Atomic orbital electron populations 1.21829 0.95426 1.01186 1.02162 1.22070 0.95423 0.89437 1.00925 1.62129 1.15172 1.15294 1.34193 1.22112 1.00529 0.94998 0.90612 1.21759 1.02201 0.94928 1.01435 1.22062 0.85840 1.01723 0.96995 1.21489 0.94593 1.01296 0.95895 1.21581 0.93713 0.96641 0.90998 0.90632 1.22473 1.01791 1.01614 0.97894 1.60758 1.15692 1.04925 1.50079 1.21414 0.85514 0.96828 0.96934 0.95105 1.21529 0.97675 0.96953 0.96621 1.19770 0.92818 0.96278 0.96637 1.20039 1.16151 1.08321 1.05798 1.24842 0.95046 0.95240 0.97651 1.69839 1.21184 1.29026 1.32990 0.86669 0.76920 0.82213 0.82600 1.20444 1.21721 1.19270 1.19353 0.90955 0.97551 0.94773 1.21791 0.98888 0.95213 0.98683 0.92607 0.92870 0.92055 0.90669 0.95089 0.91041 0.94819 0.92076 0.92732 0.92671 0.92960 0.91376 0.91787 0.92501 0.92615 0.92827 0.92589 0.85017 0.95458 0.92760 0.95332 0.96882 0.92689 0.92495 0.98131 0.92564 0.95635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.88 37.16 0.37 -0.92 16 2 C 0.05 0.52 5.50 -3.83 -0.02 0.50 16 3 N -0.54 -6.22 4.37 -234.63 -1.02 -7.25 16 4 C 0.05 0.48 5.55 -3.82 -0.02 0.46 16 5 C -0.15 -1.44 9.95 37.16 0.37 -1.07 16 6 C 0.06 0.78 4.64 -3.82 -0.02 0.76 16 7 C -0.09 -1.13 4.92 -26.73 -0.13 -1.26 16 8 C 0.08 1.10 2.39 -67.71 -0.16 0.93 16 9 H 0.08 1.12 7.07 -51.93 -0.37 0.75 16 10 C -0.18 -2.16 9.15 37.16 0.34 -1.82 16 11 N -0.68 -10.65 5.60 -99.78 -0.56 -11.20 16 12 C 0.10 1.93 2.21 -67.75 -0.15 1.78 16 13 H 0.03 0.61 7.11 -51.93 -0.37 0.24 16 14 C -0.09 -1.85 5.43 -26.63 -0.14 -1.99 16 15 C -0.02 -0.40 5.59 -27.49 -0.15 -0.55 16 16 C -0.48 -12.89 5.51 -98.92 -0.55 -13.43 16 17 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 18 N -0.89 -25.99 12.73 55.43 0.71 -25.29 16 19 Si 0.89 21.47 27.27 -169.99 -4.64 16.83 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.27 -6.28 6.46 56.52 0.37 -5.92 16 23 C 0.01 0.29 5.97 -27.48 -0.16 0.13 16 24 C -0.11 -2.27 5.24 -26.63 -0.14 -2.41 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.45 6.25 -51.93 -0.32 0.12 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.80 6.72 -51.93 -0.35 0.45 16 29 H 0.03 0.35 8.12 -51.93 -0.42 -0.08 16 30 H 0.07 0.68 5.88 -51.93 -0.31 0.38 16 31 H 0.03 0.39 8.00 -51.93 -0.42 -0.03 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.59 6.89 -51.93 -0.36 0.23 16 35 H 0.05 0.77 7.75 -51.93 -0.40 0.37 16 36 H 0.07 0.92 6.55 -51.93 -0.34 0.58 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.68 6.96 -51.93 -0.36 0.32 16 39 H 0.05 0.74 7.42 -51.93 -0.39 0.36 16 40 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.33 4.92 8.04 -39.29 -0.32 4.60 16 43 H 0.03 0.51 7.36 -51.93 -0.38 0.13 16 44 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.03 0.67 4.78 -51.93 -0.25 0.42 16 46 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.06 1.57 7.07 -51.93 -0.37 1.20 16 49 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 50 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 51 H 0.02 0.48 8.05 -51.93 -0.42 0.06 16 LS Contribution 375.91 15.07 5.66 5.66 Total: -1.00 -27.37 375.91 -10.47 -37.84 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -9.95 Total: 0.34 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -0.67 Total: -16.94 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.88 Total: -43.74 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.64 Total: 16.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -27.37 -10.47 -37.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255942044.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.393 kcal (2) G-P(sol) polarization free energy of solvation -27.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds