Wall clock time and date at job start Tue Mar 31 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46905 * 109.46870 * 2 1 4 4 C 1.46909 * 110.99900 * 160.68868 * 3 2 1 5 5 C 1.53004 * 109.47040 * 288.55110 * 4 3 2 6 6 C 1.46902 * 111.00031 * 284.63853 * 3 2 1 7 7 C 1.52999 * 109.46934 * 170.00160 * 6 3 2 8 8 C 1.52996 * 109.47061 * 180.02562 * 7 6 3 9 9 H 1.09004 * 109.47306 * 305.00004 * 8 7 6 10 10 C 1.53006 * 109.47174 * 184.99833 * 8 7 6 11 11 N 1.46904 * 109.47074 * 65.00249 * 8 7 6 12 12 C 1.46904 * 110.99737 * 221.95116 * 11 8 7 13 13 C 1.50693 * 110.01682 * 297.71109 * 12 11 8 14 14 H 1.07999 * 120.00085 * 115.46055 * 13 12 11 15 15 C 1.37881 * 120.00227 * 295.45871 * 13 12 11 16 16 N 1.31512 * 119.99560 * 5.92020 * 15 13 12 17 17 Si 1.86793 * 120.00203 * 185.92220 * 15 13 12 18 18 H 1.48507 * 109.47087 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47179 * 119.99806 * 17 15 13 20 20 H 1.48506 * 109.47129 * 239.99963 * 17 15 13 21 21 C 1.54265 * 110.03003 * 176.26693 * 12 11 8 22 22 C 1.54887 * 104.19766 * 217.10343 * 21 12 11 23 23 C 1.54893 * 102.74464 * 37.94797 * 22 21 12 24 24 C 1.53877 * 110.03152 * 59.10629 * 12 11 8 25 25 H 1.08998 * 109.47357 * 306.39477 * 1 2 3 26 26 H 1.08997 * 109.47105 * 66.39112 * 1 2 3 27 27 H 1.09001 * 109.47468 * 186.39275 * 1 2 3 28 28 H 1.08999 * 109.47385 * 240.00367 * 2 1 3 29 29 H 1.09000 * 109.47512 * 120.00244 * 2 1 3 30 30 H 1.09005 * 109.46744 * 48.54516 * 4 3 2 31 31 H 1.08995 * 109.47233 * 168.54993 * 4 3 2 32 32 H 1.08997 * 109.47178 * 186.18411 * 5 4 3 33 33 H 1.09008 * 109.46523 * 306.18527 * 5 4 3 34 34 H 1.09003 * 109.47238 * 66.17759 * 5 4 3 35 35 H 1.09002 * 109.46817 * 50.00422 * 6 3 2 36 36 H 1.08996 * 109.46839 * 290.00163 * 6 3 2 37 37 H 1.08997 * 109.47186 * 59.99999 * 7 6 3 38 38 H 1.09004 * 109.46933 * 300.00424 * 7 6 3 39 39 H 1.08996 * 109.47243 * 297.33332 * 10 8 7 40 40 H 1.09000 * 109.46942 * 57.33257 * 10 8 7 41 41 H 1.09000 * 109.46593 * 177.32990 * 10 8 7 42 42 H 1.00899 * 111.00179 * 97.99994 * 11 8 7 43 43 H 0.97000 * 119.99825 * 184.99489 * 16 15 13 44 44 H 1.09006 * 110.48895 * 335.78635 * 21 12 11 45 45 H 1.08998 * 110.48269 * 98.42818 * 21 12 11 46 46 H 1.08996 * 110.76187 * 279.63120 * 22 21 12 47 47 H 1.09000 * 110.75505 * 156.25385 * 22 21 12 48 48 H 1.09003 * 110.48416 * 203.37885 * 23 22 21 49 49 H 1.08998 * 110.49149 * 80.73657 * 23 22 21 50 50 H 1.09006 * 110.02687 * 238.56901 * 24 12 11 51 51 H 1.08999 * 110.03185 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4154 1.4500 0.4536 5 6 3.4771 1.1676 1.9560 6 6 1.8683 1.9969 -1.3269 7 6 2.1506 3.4976 -1.2317 8 6 1.9924 4.1350 -2.6135 9 1 2.6320 3.6169 -3.3281 10 6 2.3950 5.6095 -2.5442 11 7 0.5918 4.0297 -3.0439 12 6 0.5035 3.6606 -4.4631 13 6 1.1356 4.7311 -5.3148 14 1 2.0193 4.5084 -5.8942 15 6 0.5856 5.9948 -5.3543 16 7 -0.4188 6.2999 -4.5620 17 14 1.2670 7.2735 -6.5332 18 1 2.3878 6.6841 -7.3091 19 1 0.1953 7.7094 -7.4642 20 1 1.7601 8.4437 -5.7633 21 6 -0.9723 3.4649 -4.8674 22 6 -0.9399 2.2759 -5.8595 23 6 0.1342 1.3456 -5.2431 24 6 1.2070 2.3130 -4.7020 25 1 -0.3634 0.6097 0.8272 26 1 -0.3633 0.4116 -0.9416 27 1 -0.3634 -1.0213 0.1144 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 4.0059 0.7056 -0.0806 31 1 3.8164 2.4436 0.2539 32 1 4.4949 1.3232 2.3135 33 1 2.8005 1.8424 2.4806 34 1 3.1794 0.1360 2.1444 35 1 0.8507 1.8407 -1.6851 36 1 2.5723 1.5381 -2.0210 37 1 3.1681 3.6539 -0.8734 38 1 1.4465 3.9564 -0.5375 39 1 1.7252 6.1375 -1.8655 40 1 3.4190 5.6897 -2.1795 41 1 2.3276 6.0516 -3.5382 42 1 0.0920 4.8870 -2.8616 43 1 -0.8528 7.1638 -4.6399 44 1 -1.5773 3.2175 -3.9950 45 1 -1.3555 4.3600 -5.3571 46 1 -0.6384 2.6093 -6.8524 47 1 -1.9082 1.7767 -5.8959 48 1 0.5585 0.6942 -6.0071 49 1 -0.2920 0.7559 -4.4315 50 1 2.0051 2.4333 -5.4346 51 1 1.6143 1.9332 -3.7650 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255954441.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:29 Heat of formation + Delta-G solvation = -17.823358 kcal Electronic energy + Delta-G solvation = -24700.251117 eV Core-core repulsion = 21633.477217 eV Total energy + Delta-G solvation = -3066.773899 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.45873 -37.55765 -34.74717 -32.55895 -31.70190 -30.61766 -29.00269 -27.51049 -26.91376 -26.00177 -23.70384 -22.85236 -22.70097 -20.32298 -20.02046 -19.07416 -18.11082 -16.36188 -15.53313 -15.29640 -14.85446 -14.67046 -14.55563 -14.09962 -13.75175 -13.60162 -12.98478 -12.74749 -12.56888 -12.25650 -12.20006 -11.99829 -11.79343 -11.61296 -11.46802 -11.29685 -11.23328 -11.02231 -10.99434 -10.62748 -10.53113 -10.47399 -10.25032 -10.20751 -9.97170 -9.86690 -9.75125 -9.53238 -9.31306 -9.21474 -9.08539 -8.37775 -8.02493 -6.87243 -5.97832 -4.11410 3.23433 3.33842 3.37272 4.15503 4.38677 5.06574 5.19011 5.20927 5.31820 5.44679 5.52910 5.61231 5.68480 5.76733 5.80692 5.83765 5.87279 5.90145 5.95505 6.01373 6.05952 6.14968 6.18948 6.25390 6.36853 6.39692 6.47133 6.52788 6.58189 6.60701 6.72188 6.76217 6.81239 6.83362 6.87900 6.98979 7.05359 7.20305 7.26646 7.38024 7.42022 7.44908 7.46577 7.64623 7.79569 7.92228 8.32919 8.80493 8.97533 9.24329 9.57728 10.96975 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.005422 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.498666 B = 5163.172275 C = 6095.587466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 N -0.540 5.540 4 C 0.045 3.955 5 C -0.145 4.145 6 C 0.065 3.935 7 C -0.100 4.100 8 C 0.100 3.900 9 H 0.059 0.941 10 C -0.163 4.163 11 N -0.678 5.678 12 C 0.235 3.765 13 C -0.523 4.523 14 H 0.050 0.950 15 C 0.073 3.927 16 N -0.884 5.884 17 Si 0.875 3.125 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.286 1.286 21 C -0.092 4.092 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.115 4.115 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.026 0.974 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.021 0.979 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.042 0.958 40 H 0.027 0.973 41 H 0.075 0.925 42 H 0.357 0.643 43 H 0.261 0.739 44 H 0.039 0.961 45 H 0.075 0.925 46 H 0.056 0.944 47 H 0.041 0.959 48 H 0.041 0.959 49 H 0.050 0.950 50 H 0.045 0.955 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.644 -9.045 7.603 12.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 N -0.265 5.265 4 C -0.083 4.083 5 C -0.203 4.203 6 C -0.062 4.062 7 C -0.139 4.139 8 C -0.011 4.011 9 H 0.077 0.923 10 C -0.221 4.221 11 N -0.311 5.311 12 C 0.146 3.854 13 C -0.563 4.563 14 H 0.068 0.932 15 C -0.129 4.129 16 N -0.523 5.523 17 Si 0.704 3.296 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.212 1.212 21 C -0.131 4.131 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.153 4.153 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.039 0.961 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.094 0.906 42 H 0.179 0.821 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.069 0.931 50 H 0.064 0.936 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.198 -9.251 8.257 12.805 hybrid contribution 1.178 1.227 -1.810 2.484 sum 4.376 -8.023 6.447 11.184 Atomic orbital electron populations 1.21752 0.94898 1.00743 1.02976 1.22054 0.96348 0.89427 0.99918 1.62154 1.19057 1.17125 1.28166 1.22120 0.89407 1.01286 0.95523 1.21785 1.01094 1.01441 0.95985 1.22179 1.02333 0.94893 0.86782 1.21668 0.99370 0.94200 0.98626 1.21112 0.92758 0.93605 0.93668 0.92252 1.22361 0.98277 0.98396 1.03066 1.61166 1.09500 1.40384 1.20052 1.19031 0.91352 0.89768 0.85278 1.21865 1.12141 0.95029 1.27278 0.93202 1.24860 0.95257 0.97752 0.95021 1.69770 1.23258 1.22569 1.36685 0.86815 0.79176 0.82045 0.81606 1.19996 1.21040 1.21192 1.22187 0.98058 0.96464 0.96358 1.22428 0.96512 0.97309 0.99614 1.22254 0.97439 0.97294 0.98522 1.22407 0.97161 0.96716 0.99063 0.91987 0.92166 0.93079 0.95306 0.91577 0.95575 0.90435 0.92854 0.91831 0.93245 0.88872 0.96107 0.93806 0.91902 0.93901 0.95370 0.90633 0.82137 0.92840 0.94205 0.90612 0.92473 0.94021 0.93980 0.93145 0.93574 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.92 37.15 0.37 -1.44 16 2 C 0.05 0.64 5.55 -3.82 -0.02 0.62 16 3 N -0.54 -7.69 4.40 -234.62 -1.03 -8.72 16 4 C 0.04 0.56 5.55 -3.82 -0.02 0.54 16 5 C -0.15 -1.54 9.86 37.16 0.37 -1.17 16 6 C 0.06 1.05 3.48 -3.82 -0.01 1.04 16 7 C -0.10 -1.72 4.85 -26.73 -0.13 -1.85 16 8 C 0.10 1.99 1.74 -67.71 -0.12 1.87 16 9 H 0.06 1.26 6.16 -51.93 -0.32 0.94 16 10 C -0.16 -3.31 8.96 37.16 0.33 -2.98 16 11 N -0.68 -14.74 5.32 -93.08 -0.49 -15.23 16 12 C 0.24 5.31 0.48 -131.64 -0.06 5.24 16 13 C -0.52 -13.09 6.25 -34.44 -0.22 -13.31 16 14 H 0.05 1.31 7.35 -52.49 -0.39 0.92 16 15 C 0.07 1.84 3.74 -17.82 -0.07 1.78 16 16 N -0.88 -22.68 10.14 55.43 0.56 -22.12 16 17 Si 0.88 20.36 29.54 -169.99 -5.02 15.34 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 C -0.09 -2.08 5.58 -25.07 -0.14 -2.22 16 22 C -0.12 -2.37 6.91 -24.74 -0.17 -2.54 16 23 C -0.12 -2.17 6.83 -25.07 -0.17 -2.34 16 24 C -0.12 -2.36 5.10 -25.61 -0.13 -2.49 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.84 6.98 -51.93 -0.36 0.47 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.03 0.38 8.00 -51.93 -0.42 -0.04 16 29 H 0.07 0.75 6.31 -51.93 -0.33 0.42 16 30 H 0.03 0.32 8.06 -51.93 -0.42 -0.09 16 31 H 0.08 1.01 5.95 -51.93 -0.31 0.70 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.05 0.49 6.72 -51.93 -0.35 0.14 16 35 H 0.09 1.68 6.11 -51.93 -0.32 1.36 16 36 H 0.02 0.35 7.34 -51.93 -0.38 -0.03 16 37 H 0.04 0.70 6.29 -51.93 -0.33 0.37 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 1.75 5.75 -51.93 -0.30 1.45 16 42 H 0.36 8.62 6.40 -39.29 -0.25 8.37 16 43 H 0.26 6.59 8.32 -40.82 -0.34 6.25 16 44 H 0.04 0.90 8.05 -51.93 -0.42 0.48 16 45 H 0.08 1.91 6.22 -51.93 -0.32 1.59 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.05 0.98 7.38 -51.93 -0.38 0.59 16 51 H 0.05 1.08 4.49 -51.93 -0.23 0.85 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -24.22 366.90 -10.25 -34.48 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -9.60 Total: 9.98 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -0.19 Total: -19.25 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.96 Total: -46.07 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -24.22 -10.25 -34.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255954441.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.654 kcal (2) G-P(sol) polarization free energy of solvation -24.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds