Wall clock time and date at job start Tue Mar 31 2020 06:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 109.46968 * 2 1 4 4 C 1.46905 * 111.00331 * 301.30686 * 3 2 1 5 5 C 1.52998 * 109.47068 * 295.01703 * 4 3 2 6 6 C 1.46908 * 111.00149 * 65.26061 * 3 2 1 7 7 C 1.53000 * 109.46919 * 66.04664 * 6 3 2 8 8 C 1.53003 * 109.46976 * 180.02562 * 7 6 3 9 9 H 1.09003 * 109.47203 * 54.99464 * 8 7 6 10 10 C 1.53000 * 109.46929 * 174.99915 * 8 7 6 11 11 N 1.46900 * 109.46750 * 294.99817 * 8 7 6 12 12 C 1.46900 * 111.00036 * 156.89668 * 11 8 7 13 13 C 1.50703 * 110.01714 * 306.80114 * 12 11 8 14 14 H 1.08001 * 120.00048 * 117.35574 * 13 12 11 15 15 C 1.37881 * 120.00018 * 297.36008 * 13 12 11 16 16 N 1.31513 * 119.99941 * 2.93231 * 15 13 12 17 17 Si 1.86797 * 120.00097 * 182.93424 * 15 13 12 18 18 H 1.48505 * 109.47007 * 89.99671 * 17 15 13 19 19 H 1.48499 * 109.46940 * 209.99867 * 17 15 13 20 20 H 1.48500 * 109.47053 * 329.99894 * 17 15 13 21 21 C 1.54264 * 110.03696 * 185.40925 * 12 11 8 22 22 C 1.54961 * 104.16221 * 217.13800 * 21 12 11 23 23 C 1.54891 * 102.77651 * 37.88439 * 22 21 12 24 24 C 1.53872 * 110.03158 * 68.19029 * 12 11 8 25 25 H 1.08999 * 109.47014 * 304.92999 * 1 2 3 26 26 H 1.09000 * 109.47378 * 64.93222 * 1 2 3 27 27 H 1.09004 * 109.46578 * 184.93430 * 1 2 3 28 28 H 1.09001 * 109.47434 * 240.00301 * 2 1 3 29 29 H 1.09002 * 109.47478 * 119.99899 * 2 1 3 30 30 H 1.09005 * 109.46556 * 55.01205 * 4 3 2 31 31 H 1.08995 * 109.47750 * 175.01376 * 4 3 2 32 32 H 1.09001 * 109.46807 * 66.22845 * 5 4 3 33 33 H 1.09000 * 109.47024 * 186.22799 * 5 4 3 34 34 H 1.08998 * 109.47107 * 306.23616 * 5 4 3 35 35 H 1.09003 * 109.46710 * 306.04861 * 6 3 2 36 36 H 1.08997 * 109.47260 * 186.04810 * 6 3 2 37 37 H 1.08998 * 109.47148 * 60.00082 * 7 6 3 38 38 H 1.09005 * 109.46919 * 300.00164 * 7 6 3 39 39 H 1.08995 * 109.47499 * 313.89326 * 10 8 7 40 40 H 1.09003 * 109.46760 * 73.89814 * 10 8 7 41 41 H 1.08997 * 109.46881 * 193.89424 * 10 8 7 42 42 H 1.00902 * 110.99893 * 32.94369 * 11 8 7 43 43 H 0.96996 * 120.00155 * 180.02562 * 16 15 13 44 44 H 1.09007 * 110.48193 * 335.78311 * 21 12 11 45 45 H 1.08999 * 110.48434 * 98.42553 * 21 12 11 46 46 H 1.09004 * 110.71642 * 279.57391 * 22 21 12 47 47 H 1.08994 * 110.76427 * 156.22124 * 22 21 12 48 48 H 1.08998 * 110.48294 * 203.40619 * 23 22 21 49 49 H 1.09001 * 110.48580 * 80.76362 * 23 22 21 50 50 H 1.09003 * 110.03587 * 238.57328 * 24 12 11 51 51 H 1.08996 * 110.03483 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5232 2.1190 -1.1718 5 6 2.1069 1.5024 -2.4446 6 6 1.6539 2.0727 1.2456 7 6 2.3908 1.4261 2.4203 8 6 2.0095 2.1420 3.7177 9 1 0.9252 2.1383 3.8296 10 6 2.6474 1.4188 4.9056 11 7 2.4923 3.5286 3.6719 12 6 1.7201 4.3852 4.5818 13 6 0.2470 4.2456 4.2961 14 1 -0.4152 3.8533 5.0538 15 6 -0.2553 4.6185 3.0674 16 7 0.5588 5.0417 2.1252 17 14 -2.0920 4.5226 2.7411 18 1 -2.7290 5.8110 3.1149 19 1 -2.3253 4.2550 1.2992 20 1 -2.6819 3.4258 3.5499 21 6 2.1531 5.8567 4.4173 22 6 2.0974 6.4313 5.8554 23 6 2.6138 5.2516 6.7160 24 6 2.0124 4.0006 6.0428 25 1 -0.3633 0.5884 0.8425 26 1 -0.3634 0.4354 -0.9308 27 1 -0.3632 -1.0239 0.0884 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.4353 2.0581 -1.2044 31 1 1.8267 3.1634 -1.1017 32 1 1.7146 0.4935 -2.5725 33 1 1.8288 2.1122 -3.3042 34 1 3.1932 1.4623 -2.3637 35 1 0.5783 1.9922 1.4027 36 1 1.9333 3.1239 1.1758 37 1 3.4664 1.5066 2.2631 38 1 2.1114 0.3748 2.4901 39 1 2.4921 0.3448 4.8032 40 1 3.7163 1.6309 4.9286 41 1 2.1881 1.7656 5.8312 42 1 2.4691 3.8886 2.7296 43 1 0.2054 5.3043 1.2609 44 1 3.1677 5.9139 4.0229 45 1 1.4591 6.3880 3.7661 46 1 1.0740 6.6895 6.1280 47 1 2.7538 7.2961 5.9516 48 1 2.2558 5.3423 7.7415 49 1 3.7028 5.2108 6.6932 50 1 1.0887 3.7138 6.5454 51 1 2.7268 3.1781 6.0766 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255954442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:31 Heat of formation + Delta-G solvation = -6.840626 kcal Electronic energy + Delta-G solvation = -24974.995983 eV Core-core repulsion = 21908.698331 eV Total energy + Delta-G solvation = -3066.297652 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.53748 -37.68419 -34.74684 -32.51242 -31.25288 -30.35493 -29.10786 -27.74972 -26.59453 -26.02212 -24.09381 -23.90012 -21.95930 -19.89724 -19.39131 -18.78854 -18.39512 -16.34925 -15.69377 -15.61706 -14.83253 -14.71645 -14.44414 -13.88473 -13.68329 -13.47734 -12.96377 -12.77179 -12.43398 -12.25158 -12.22148 -12.03595 -11.74943 -11.53210 -11.44470 -11.31751 -11.17918 -11.05946 -10.91028 -10.63623 -10.49935 -10.38601 -10.31568 -10.22163 -9.91665 -9.81176 -9.71911 -9.40918 -9.20350 -9.05029 -8.96051 -8.40019 -7.81859 -6.88534 -5.99334 -4.13636 3.20827 3.28932 3.32839 4.35029 4.36295 5.15766 5.19373 5.28916 5.46603 5.52212 5.65520 5.67080 5.72974 5.79206 5.87188 5.90714 5.93479 5.95825 5.97072 6.04941 6.12697 6.15548 6.27807 6.34090 6.45315 6.47239 6.48629 6.56815 6.57793 6.63513 6.76683 6.79212 6.85857 6.88718 6.98307 6.99141 7.05485 7.19977 7.31297 7.43270 7.46658 7.58748 7.60378 7.66436 7.76459 7.90678 8.31157 8.82625 8.96744 9.23633 9.55416 10.94015 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.006403 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.125365 B = 4371.745989 C = 5099.342711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 N -0.536 5.536 4 C 0.047 3.953 5 C -0.145 4.145 6 C 0.053 3.947 7 C -0.107 4.107 8 C 0.089 3.911 9 H 0.059 0.941 10 C -0.143 4.143 11 N -0.678 5.678 12 C 0.234 3.766 13 C -0.520 4.520 14 H 0.049 0.951 15 C 0.073 3.927 16 N -0.883 5.883 17 Si 0.876 3.124 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.094 4.094 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.123 4.123 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.033 0.967 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.352 0.648 43 H 0.260 0.740 44 H 0.037 0.963 45 H 0.076 0.924 46 H 0.056 0.944 47 H 0.040 0.960 48 H 0.041 0.959 49 H 0.050 0.950 50 H 0.044 0.956 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.590 -6.035 -2.926 7.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.082 4.082 3 N -0.260 5.260 4 C -0.081 4.081 5 C -0.203 4.203 6 C -0.074 4.074 7 C -0.146 4.146 8 C -0.023 4.023 9 H 0.077 0.923 10 C -0.201 4.201 11 N -0.313 5.313 12 C 0.144 3.856 13 C -0.560 4.560 14 H 0.067 0.933 15 C -0.128 4.128 16 N -0.523 5.523 17 Si 0.705 3.295 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.133 4.133 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.161 4.161 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.174 0.826 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.095 0.905 46 H 0.075 0.925 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.069 0.931 50 H 0.063 0.937 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.620 -6.086 -2.715 7.584 hybrid contribution -3.055 0.097 -0.681 3.132 sum 0.565 -5.989 -3.396 6.908 Atomic orbital electron populations 1.22423 0.98889 1.01729 1.02217 1.22164 0.92500 0.91510 1.02026 1.62359 1.58920 1.01799 1.02917 1.22055 0.97269 0.98453 0.90329 1.21777 1.01774 1.00173 0.96565 1.22304 0.97819 0.99757 0.87490 1.21698 1.00408 0.97989 0.94478 1.21223 0.98908 0.90423 0.91721 0.92324 1.22135 1.00837 0.97612 0.99514 1.61261 1.54772 1.00528 1.14752 1.19021 0.90004 0.88909 0.87636 1.21795 0.94017 1.41628 0.98533 0.93272 1.24855 0.96793 0.94875 0.96327 1.69760 1.33743 1.44536 1.04230 0.86843 0.87006 0.78443 0.77224 1.20750 1.21440 1.20195 1.22243 0.99250 0.97856 0.93943 1.22431 0.99354 0.96148 0.97939 1.22286 0.99050 0.96993 0.97362 1.22670 0.99029 0.96718 0.97703 0.91968 0.92824 0.92727 0.91430 0.90756 0.94990 0.90685 0.93306 0.92879 0.91965 0.94869 0.88277 0.91951 0.93512 0.94838 0.93101 0.92220 0.82597 0.92947 0.94376 0.90513 0.92529 0.94073 0.94017 0.93104 0.93675 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 9.19 37.16 0.34 -2.41 16 2 C 0.05 0.66 5.60 -3.83 -0.02 0.64 16 3 N -0.54 -8.75 4.72 -234.62 -1.11 -9.86 16 4 C 0.05 0.72 5.39 -3.82 -0.02 0.70 16 5 C -0.15 -1.80 9.64 37.16 0.36 -1.45 16 6 C 0.05 1.01 4.62 -3.82 -0.02 0.99 16 7 C -0.11 -1.97 4.73 -26.73 -0.13 -2.10 16 8 C 0.09 1.79 2.41 -67.71 -0.16 1.63 16 9 H 0.06 1.37 6.23 -51.93 -0.32 1.05 16 10 C -0.14 -2.58 7.98 37.16 0.30 -2.29 16 11 N -0.68 -14.94 5.88 -93.08 -0.55 -15.48 16 12 C 0.23 5.33 0.51 -131.64 -0.07 5.26 16 13 C -0.52 -13.02 6.10 -34.44 -0.21 -13.23 16 14 H 0.05 1.29 7.33 -52.49 -0.38 0.90 16 15 C 0.07 1.83 4.97 -17.82 -0.09 1.74 16 16 N -0.88 -21.87 9.42 55.43 0.52 -21.35 16 17 Si 0.88 20.34 29.54 -169.99 -5.02 15.31 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.09 -2.15 5.50 -25.03 -0.14 -2.28 16 22 C -0.12 -2.40 6.91 -24.70 -0.17 -2.57 16 23 C -0.12 -2.24 6.83 -25.07 -0.17 -2.41 16 24 C -0.12 -2.56 4.92 -25.62 -0.13 -2.69 16 25 H 0.06 1.02 6.20 -51.93 -0.32 0.70 16 26 H 0.05 0.75 6.55 -51.93 -0.34 0.41 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.87 6.64 -51.93 -0.34 0.52 16 29 H 0.07 1.06 6.25 -51.93 -0.32 0.74 16 30 H 0.03 0.51 6.12 -51.93 -0.32 0.19 16 31 H 0.07 1.23 7.95 -51.93 -0.41 0.82 16 32 H 0.05 0.57 6.87 -51.93 -0.36 0.21 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.69 6.10 -51.93 -0.32 0.38 16 36 H 0.10 2.13 5.38 -51.93 -0.28 1.85 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.79 6.38 -51.93 -0.33 0.46 16 39 H 0.03 0.53 8.02 -51.93 -0.42 0.12 16 40 H 0.05 0.90 8.13 -51.93 -0.42 0.48 16 41 H 0.06 1.10 5.49 -51.93 -0.28 0.81 16 42 H 0.35 8.28 4.82 -39.29 -0.19 8.09 16 43 H 0.26 6.38 8.31 -40.82 -0.34 6.04 16 44 H 0.04 0.87 8.05 -51.93 -0.42 0.45 16 45 H 0.08 1.93 6.28 -51.93 -0.33 1.61 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.04 0.96 7.37 -51.93 -0.38 0.58 16 51 H 0.07 1.39 4.55 -51.93 -0.24 1.15 16 LS Contribution 360.35 15.07 5.43 5.43 Total: -1.00 -23.91 360.35 -10.30 -34.20 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -9.25 Total: 12.21 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -0.32 Total: -20.47 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -1.13 Total: -46.69 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -23.91 -10.30 -34.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255954442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.364 kcal (2) G-P(sol) polarization free energy of solvation -23.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds