Wall clock time and date at job start Tue Mar 31 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47477 * 2 1 4 4 C 1.46900 * 110.99763 * 66.04127 * 3 2 1 5 5 C 1.52999 * 109.47031 * 199.12984 * 4 3 2 6 6 C 1.46893 * 111.00400 * 189.99908 * 3 2 1 7 7 C 1.52999 * 109.47116 * 76.24813 * 6 3 2 8 8 C 1.53004 * 109.47352 * 182.05392 * 7 6 3 9 9 H 1.08994 * 109.46667 * 55.52500 * 8 7 6 10 10 C 1.52998 * 109.47014 * 175.52696 * 8 7 6 11 11 N 1.46892 * 109.46982 * 295.52867 * 8 7 6 12 12 C 1.46846 * 111.00416 * 169.71344 * 11 8 7 13 13 C 1.53037 * 109.52928 * 185.83951 * 12 11 8 14 14 C 1.53124 * 109.30730 * 300.79940 * 13 12 11 15 15 C 1.53203 * 109.11511 * 57.63694 * 14 13 12 16 16 H 1.08998 * 109.49255 * 62.32049 * 15 14 13 17 17 C 1.50701 * 109.52165 * 182.40031 * 15 14 13 18 18 H 1.08008 * 119.99815 * 119.84014 * 17 15 14 19 19 C 1.37877 * 120.00454 * 299.84219 * 17 15 14 20 20 N 1.31516 * 119.99528 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00415 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.46852 * 89.99742 * 21 19 17 23 23 H 1.48500 * 109.47038 * 210.00104 * 21 19 17 24 24 H 1.48501 * 109.46730 * 330.00264 * 21 19 17 25 25 C 1.46853 * 110.99978 * 293.92235 * 11 8 7 26 26 H 1.09008 * 109.47155 * 300.00325 * 1 2 3 27 27 H 1.09001 * 109.46863 * 59.99649 * 1 2 3 28 28 H 1.08993 * 109.47481 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47080 * 239.99808 * 2 1 3 30 30 H 1.09002 * 109.46599 * 119.99869 * 2 1 3 31 31 H 1.08998 * 109.47661 * 319.13422 * 4 3 2 32 32 H 1.08996 * 109.46795 * 79.13429 * 4 3 2 33 33 H 1.09003 * 109.47461 * 304.03184 * 5 4 3 34 34 H 1.09000 * 109.47395 * 64.02955 * 5 4 3 35 35 H 1.08999 * 109.47123 * 184.03191 * 5 4 3 36 36 H 1.09001 * 109.46870 * 316.25407 * 6 3 2 37 37 H 1.08991 * 109.47416 * 196.25226 * 6 3 2 38 38 H 1.09001 * 109.46914 * 62.05579 * 7 6 3 39 39 H 1.09004 * 109.47320 * 302.05521 * 7 6 3 40 40 H 1.08996 * 109.47054 * 60.00348 * 10 8 7 41 41 H 1.08999 * 109.46636 * 180.02562 * 10 8 7 42 42 H 1.08997 * 109.47245 * 299.99450 * 10 8 7 43 43 H 1.09000 * 109.46050 * 65.81834 * 12 11 8 44 44 H 1.08999 * 109.45319 * 305.85281 * 12 11 8 45 45 H 1.08998 * 109.50258 * 60.75765 * 13 12 11 46 46 H 1.08998 * 109.50151 * 180.84404 * 13 12 11 47 47 H 1.08998 * 109.52262 * 177.57959 * 14 13 12 48 48 H 1.09001 * 109.52241 * 297.76726 * 14 13 12 49 49 H 0.97003 * 119.99542 * 179.97438 * 20 19 17 50 50 H 1.09004 * 109.46090 * 294.17397 * 25 11 8 51 51 H 1.08995 * 109.46145 * 54.14490 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 1.7527 3.5811 1.0501 6 6 3.4685 1.4311 -0.2381 7 6 3.7496 1.1861 -1.7220 8 6 5.2608 1.1832 -1.9612 9 1 5.7302 0.4460 -1.3100 10 6 5.5452 0.8281 -3.4220 11 7 5.8057 2.5150 -1.6660 12 6 7.2739 2.4906 -1.6471 13 6 7.8024 3.8539 -1.1953 14 6 7.3045 4.9346 -2.1590 15 6 5.7732 4.9062 -2.1970 16 1 5.3805 5.1379 -1.2070 17 6 5.2749 5.9269 -3.1874 18 1 4.6823 5.6133 -4.0341 19 6 5.5756 7.2611 -3.0126 20 7 6.2968 7.6430 -1.9813 21 14 4.9586 8.5263 -4.2407 22 1 3.6278 9.0255 -3.8106 23 1 5.9153 9.6602 -4.3061 24 1 4.8421 7.8987 -5.5815 25 6 5.3035 3.5124 -2.6198 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.6560 1.7941 1.5448 32 1 2.3664 1.7669 2.0365 33 1 2.7468 3.8458 0.6898 34 1 1.0067 3.8907 0.3182 35 1 1.5635 4.0856 1.9976 36 1 3.9592 0.6606 0.3566 37 1 3.8527 2.4102 0.0476 38 1 3.2894 1.9770 -2.3143 39 1 3.3333 0.2226 -2.0164 40 1 5.0756 1.5653 -4.0732 41 1 6.6218 0.8256 -3.5923 42 1 5.1409 -0.1602 -3.6410 43 1 7.6463 2.2700 -2.6475 44 1 7.6152 1.7211 -0.9547 45 1 7.4415 4.0689 -0.1895 46 1 8.8923 3.8400 -1.1958 47 1 7.6432 5.9123 -1.8164 48 1 7.6972 4.7414 -3.1573 49 1 6.5086 8.5816 -1.8586 50 1 5.6853 3.2870 -3.6156 51 1 4.2140 3.4850 -2.6339 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255963502.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:20 Heat of formation + Delta-G solvation = -13.285917 kcal Electronic energy + Delta-G solvation = -24180.424926 eV Core-core repulsion = 21113.847785 eV Total energy + Delta-G solvation = -3066.577141 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.02888 -37.82096 -34.82269 -32.62723 -31.71718 -30.78247 -29.81365 -28.93872 -27.30130 -24.90175 -23.75943 -22.95187 -22.63043 -21.28194 -20.15753 -19.69709 -18.17020 -16.41250 -15.82166 -15.53204 -15.21848 -14.70534 -14.36648 -14.13057 -13.92644 -13.52783 -13.40073 -13.28197 -12.96765 -12.57067 -12.32849 -12.18956 -12.01654 -11.89286 -11.63128 -11.58522 -11.40905 -11.30666 -11.21244 -10.92216 -10.84173 -10.76872 -10.60441 -10.40522 -10.24215 -10.13711 -10.00021 -9.74899 -9.37531 -8.93565 -8.61970 -8.24465 -8.15991 -7.50682 -5.92097 -3.97448 3.34388 3.40963 3.44064 3.99156 4.44158 4.61482 4.95650 5.10454 5.15576 5.24379 5.38113 5.39024 5.41867 5.45268 5.56001 5.64362 5.67813 5.72101 5.75422 5.82632 5.90413 5.92593 5.96558 6.02387 6.04697 6.11682 6.14657 6.17426 6.24702 6.34927 6.39186 6.47166 6.54448 6.58561 6.61184 6.65975 6.79690 6.85037 7.09850 7.28377 7.29915 7.30987 7.48150 7.77275 7.82139 7.94018 8.15889 8.23976 8.55443 9.06776 9.66571 11.13907 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.005001 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.216393 B = 5597.200435 C = 6542.483824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 N -0.540 5.540 4 C 0.051 3.949 5 C -0.149 4.149 6 C 0.063 3.937 7 C -0.101 4.101 8 C 0.080 3.920 9 H 0.068 0.932 10 C -0.184 4.184 11 N -0.529 5.529 12 C 0.063 3.937 13 C -0.117 4.117 14 C -0.110 4.110 15 C 0.056 3.944 16 H 0.032 0.968 17 C -0.511 4.511 18 H 0.052 0.948 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.887 3.113 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.065 3.935 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.025 0.975 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.023 0.977 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.043 0.957 47 H 0.089 0.911 48 H 0.028 0.972 49 H 0.258 0.742 50 H 0.020 0.980 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.426 -14.689 4.443 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.079 4.079 3 N -0.265 5.265 4 C -0.077 4.077 5 C -0.207 4.207 6 C -0.064 4.064 7 C -0.139 4.139 8 C -0.029 4.029 9 H 0.087 0.913 10 C -0.243 4.243 11 N -0.253 5.253 12 C -0.065 4.065 13 C -0.154 4.154 14 C -0.148 4.148 15 C 0.038 3.962 16 H 0.050 0.950 17 C -0.550 4.550 18 H 0.070 0.930 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.716 3.284 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.062 4.062 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.107 0.893 48 H 0.047 0.953 49 H 0.068 0.932 50 H 0.039 0.961 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.743 -14.138 4.619 15.944 hybrid contribution 0.454 0.011 -0.870 0.981 sum -5.289 -14.127 3.749 15.543 Atomic orbital electron populations 1.21828 0.95328 1.01025 1.02477 1.22077 0.95708 0.89739 1.00339 1.62026 1.15122 1.14759 1.34616 1.22098 1.00056 0.95508 0.90054 1.21782 1.03513 0.94161 1.01194 1.22083 0.85737 1.02441 0.96154 1.21574 0.94409 1.01428 0.96501 1.21661 0.95257 0.91826 0.94200 0.91347 1.22439 1.01516 1.01339 0.98963 1.62216 1.07220 1.04346 1.51524 1.22006 0.88057 0.98110 0.98359 1.21667 0.97830 0.94978 1.00974 1.21659 0.99045 0.98482 0.95614 1.18653 0.91711 0.88701 0.97166 0.94978 1.21155 1.32539 0.91620 1.09689 0.92976 1.24915 0.95149 0.98343 0.95362 1.69898 1.38334 1.15974 1.28587 0.86671 0.78625 0.81315 0.81829 1.20730 1.21359 1.20064 1.22352 0.98838 0.93206 0.91808 0.92773 0.91819 0.92767 0.90877 0.95573 0.91246 0.95284 0.91530 0.92129 0.92888 0.95709 0.88841 0.90624 0.92729 0.91808 0.92897 0.93040 0.95845 0.92813 0.92246 0.93801 0.89296 0.95336 0.93177 0.96136 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.88 37.16 0.37 -1.06 16 2 C 0.05 0.54 5.50 -3.82 -0.02 0.52 16 3 N -0.54 -7.11 4.37 -234.64 -1.02 -8.14 16 4 C 0.05 0.63 5.55 -3.82 -0.02 0.60 16 5 C -0.15 -2.01 10.06 37.16 0.37 -1.64 16 6 C 0.06 0.89 4.67 -3.83 -0.02 0.88 16 7 C -0.10 -1.43 4.75 -26.73 -0.13 -1.56 16 8 C 0.08 1.18 2.31 -67.72 -0.16 1.03 16 9 H 0.07 0.95 7.98 -51.93 -0.41 0.54 16 10 C -0.18 -2.58 8.44 37.16 0.31 -2.26 16 11 N -0.53 -9.42 4.07 -226.69 -0.92 -10.34 16 12 C 0.06 1.09 5.14 -3.83 -0.02 1.08 16 13 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 14 C -0.11 -2.61 5.03 -26.56 -0.13 -2.74 16 15 C 0.06 1.40 2.26 -91.65 -0.21 1.20 16 16 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 17 C -0.51 -14.02 8.56 -34.44 -0.29 -14.32 16 18 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -25.43 11.37 55.43 0.63 -24.80 16 21 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.06 1.35 3.76 -3.83 -0.01 1.34 16 26 H 0.05 0.51 6.25 -51.92 -0.32 0.18 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.79 6.63 -51.93 -0.34 0.45 16 30 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 31 H 0.07 0.76 5.89 -51.93 -0.31 0.46 16 32 H 0.03 0.36 8.01 -51.93 -0.42 -0.06 16 33 H 0.07 1.05 6.64 -51.93 -0.34 0.71 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.02 0.34 7.99 -51.93 -0.41 -0.08 16 37 H 0.09 1.55 6.06 -51.93 -0.31 1.24 16 38 H 0.08 1.23 6.25 -51.93 -0.32 0.91 16 39 H 0.05 0.69 6.76 -51.93 -0.35 0.34 16 40 H 0.06 0.99 6.46 -51.93 -0.34 0.65 16 41 H 0.05 0.75 6.82 -51.93 -0.35 0.40 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.02 0.41 6.88 -51.93 -0.36 0.06 16 44 H 0.05 0.83 8.01 -51.93 -0.42 0.42 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.09 2.37 6.17 -51.93 -0.32 2.04 16 48 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 50 H 0.02 0.44 6.58 -51.93 -0.34 0.10 16 51 H 0.06 1.33 6.14 -51.93 -0.32 1.01 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -27.42 370.96 -10.73 -38.15 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -9.77 Total: 0.86 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -0.22 Total: -17.72 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: -1.32 Total: -43.28 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.42 -10.73 -38.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255963502.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.866 kcal (2) G-P(sol) polarization free energy of solvation -27.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds