Wall clock time and date at job start Tue Mar 31 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46895 * 109.47278 * 2 1 4 4 C 1.46901 * 111.00052 * 199.71288 * 3 2 1 5 5 C 1.52994 * 109.47316 * 75.63404 * 4 3 2 6 6 C 1.46898 * 110.99993 * 75.75816 * 3 2 1 7 7 C 1.53006 * 109.47083 * 189.99640 * 6 3 2 8 8 C 1.52999 * 109.46675 * 179.97438 * 7 6 3 9 9 H 1.08996 * 109.47655 * 304.99604 * 8 7 6 10 10 C 1.53002 * 109.46718 * 184.99972 * 8 7 6 11 11 N 1.46897 * 109.47193 * 65.00742 * 8 7 6 12 12 C 1.46848 * 111.00434 * 66.04119 * 11 8 7 13 13 C 1.53041 * 109.52402 * 185.84341 * 12 11 8 14 14 C 1.53119 * 109.27357 * 300.81999 * 13 12 11 15 15 C 1.53112 * 109.16346 * 57.65453 * 14 13 12 16 16 H 1.09003 * 109.50434 * 62.28565 * 15 14 13 17 17 C 1.50702 * 109.50204 * 182.36005 * 15 14 13 18 18 H 1.08002 * 119.99774 * 120.00304 * 17 15 14 19 19 C 1.37868 * 120.00381 * 300.00408 * 17 15 14 20 20 N 1.31512 * 120.00169 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 120.00150 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47366 * 89.99961 * 21 19 17 23 23 H 1.48501 * 109.47436 * 210.00092 * 21 19 17 24 24 H 1.48501 * 109.47187 * 329.99862 * 21 19 17 25 25 C 1.46844 * 111.00128 * 190.25236 * 11 8 7 26 26 H 1.08999 * 109.46902 * 54.83469 * 1 2 3 27 27 H 1.09004 * 109.47131 * 294.84369 * 1 2 3 28 28 H 1.08997 * 109.47901 * 174.83899 * 1 2 3 29 29 H 1.08997 * 109.46817 * 120.00483 * 2 1 3 30 30 H 1.09006 * 109.46692 * 239.99953 * 2 1 3 31 31 H 1.09000 * 109.47490 * 195.63744 * 4 3 2 32 32 H 1.09002 * 109.46693 * 315.63900 * 4 3 2 33 33 H 1.08998 * 109.47433 * 174.83956 * 5 4 3 34 34 H 1.09004 * 109.47275 * 294.84288 * 5 4 3 35 35 H 1.09003 * 109.47582 * 54.84070 * 5 4 3 36 36 H 1.09000 * 109.47249 * 309.99699 * 6 3 2 37 37 H 1.09000 * 109.47328 * 70.00184 * 6 3 2 38 38 H 1.09000 * 109.47126 * 300.00134 * 7 6 3 39 39 H 1.09000 * 109.46595 * 60.00094 * 7 6 3 40 40 H 1.09005 * 109.47286 * 60.00138 * 10 8 7 41 41 H 1.09001 * 109.47454 * 179.97438 * 10 8 7 42 42 H 1.08998 * 109.47489 * 300.00191 * 10 8 7 43 43 H 1.09003 * 109.45730 * 305.85402 * 12 11 8 44 44 H 1.08992 * 109.45985 * 65.83362 * 12 11 8 45 45 H 1.08998 * 109.50165 * 60.75899 * 13 12 11 46 46 H 1.08997 * 109.49772 * 180.83999 * 13 12 11 47 47 H 1.08997 * 109.51929 * 177.56418 * 14 13 12 48 48 H 1.09005 * 109.52240 * 297.68457 * 14 13 12 49 49 H 0.97000 * 120.00327 * 179.97438 * 20 19 17 50 50 H 1.09000 * 109.46074 * 294.17791 * 25 11 8 51 51 H 1.09004 * 109.46346 * 54.13926 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4124 1.4509 -0.4626 5 6 3.4540 1.2757 -1.9819 6 6 1.8771 1.9937 1.3293 7 6 2.1590 3.4947 1.2357 8 6 2.0098 4.1288 2.6201 9 1 1.0238 3.8960 3.0221 10 6 2.1687 5.6462 2.5057 11 7 3.0431 3.5946 3.5173 12 6 4.3829 4.0118 3.0844 13 6 5.4385 3.3214 3.9512 14 6 5.2145 3.7000 5.4178 15 6 3.7955 3.2986 5.8295 16 1 3.6841 2.2176 5.7451 17 6 3.5470 3.7201 7.2549 18 1 2.7477 4.4099 7.4825 19 6 4.3399 3.2253 8.2684 20 7 5.3129 2.3850 7.9914 21 14 4.0313 3.7472 10.0353 22 1 3.0686 2.8098 10.6675 23 1 5.3109 3.7253 10.7886 24 1 3.4692 5.1216 10.0544 25 6 2.7876 3.9896 4.9083 26 1 -0.3633 0.5919 -0.8401 27 1 -0.3633 0.4318 0.9326 28 1 -0.3635 -1.0234 -0.0924 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 3.8382 2.4184 -0.1966 32 1 3.9904 0.6570 0.0106 33 1 4.4753 1.4157 -2.3360 34 1 3.1137 0.2732 -2.2415 35 1 2.8027 2.0132 -2.4508 36 1 0.8619 1.8367 1.6938 37 1 2.5857 1.5333 2.0177 38 1 3.1741 3.6517 0.8711 39 1 1.4504 3.9551 0.5472 40 1 1.4020 6.0427 1.8399 41 1 2.0620 6.0981 3.4919 42 1 3.1547 5.8791 2.1037 43 1 4.5306 3.7328 2.0411 44 1 4.4780 5.0925 3.1884 45 1 5.3529 2.2407 3.8371 46 1 6.4322 3.6427 3.6393 47 1 5.9373 3.1764 6.0435 48 1 5.3395 4.7760 5.5394 49 1 5.8710 2.0371 8.7044 50 1 2.8901 5.0705 5.0036 51 1 1.7767 3.6946 5.1898 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255963503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:22 Heat of formation + Delta-G solvation = -14.389753 kcal Electronic energy + Delta-G solvation = -23969.860588 eV Core-core repulsion = 20903.235581 eV Total energy + Delta-G solvation = -3066.625007 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.11789 -37.83421 -34.89043 -32.50470 -31.89172 -30.96962 -29.85972 -28.96393 -27.38462 -24.95473 -23.80060 -22.99033 -22.56979 -21.61176 -20.26548 -19.52913 -18.25646 -16.46899 -15.69560 -15.68149 -15.24937 -14.87026 -14.52048 -14.04441 -13.96253 -13.80012 -13.48869 -13.18549 -13.00187 -12.62343 -12.49255 -12.15186 -12.08317 -12.01358 -11.73692 -11.62367 -11.49672 -11.40113 -11.11670 -11.01251 -10.95970 -10.88168 -10.64054 -10.56785 -10.39873 -10.14625 -9.96933 -9.77852 -9.43700 -8.96495 -8.67280 -8.28219 -8.24640 -7.52644 -5.95493 -4.01531 3.31604 3.38344 3.41270 3.92768 4.40807 4.59906 4.91309 4.93129 5.17357 5.18822 5.30372 5.34534 5.37787 5.44735 5.49457 5.52631 5.62003 5.64180 5.71410 5.77495 5.84371 5.91157 5.92001 5.94464 5.97954 6.00628 6.06346 6.13949 6.15230 6.22108 6.25057 6.36687 6.44578 6.47556 6.55864 6.57066 6.77107 6.80508 7.02071 7.18005 7.20796 7.25610 7.45041 7.73784 7.78644 7.90625 8.11932 8.20652 8.51332 9.02774 9.62727 11.10362 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.021413 B = 0.003838 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.317654 B = 7293.209200 C = 7421.181476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.542 5.542 4 C 0.045 3.955 5 C -0.144 4.144 6 C 0.060 3.940 7 C -0.103 4.103 8 C 0.078 3.922 9 H 0.076 0.924 10 C -0.183 4.183 11 N -0.529 5.529 12 C 0.060 3.940 13 C -0.117 4.117 14 C -0.109 4.109 15 C 0.056 3.944 16 H 0.032 0.968 17 C -0.514 4.514 18 H 0.052 0.948 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.068 3.932 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.026 0.974 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.089 0.911 48 H 0.028 0.972 49 H 0.259 0.741 50 H 0.020 0.980 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 -0.756 -17.150 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 N -0.267 5.267 4 C -0.083 4.083 5 C -0.202 4.202 6 C -0.067 4.067 7 C -0.141 4.141 8 C -0.031 4.031 9 H 0.094 0.906 10 C -0.242 4.242 11 N -0.253 5.253 12 C -0.067 4.067 13 C -0.155 4.155 14 C -0.147 4.147 15 C 0.037 3.963 16 H 0.050 0.950 17 C -0.553 4.553 18 H 0.071 0.929 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.059 4.059 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.107 0.893 48 H 0.047 0.953 49 H 0.069 0.931 50 H 0.038 0.962 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.185 -1.114 -17.405 18.195 hybrid contribution 0.430 0.745 1.659 1.868 sum -4.755 -0.369 -15.746 16.453 Atomic orbital electron populations 1.21751 0.95130 1.01048 1.02347 1.22073 0.96059 0.89298 1.00529 1.62133 1.19977 1.17536 1.27083 1.22115 0.89048 1.01512 0.95580 1.21767 1.01139 1.01694 0.95619 1.22069 1.01621 0.94659 0.88380 1.21639 1.01642 0.94923 0.95860 1.21687 0.96497 0.91671 0.93267 0.90564 1.22434 1.01695 0.98143 1.01923 1.62208 1.01062 1.58988 1.03045 1.22055 0.89716 0.97006 0.97959 1.21671 0.95599 1.00195 0.98008 1.21632 1.02074 0.98840 0.92195 1.18643 0.89702 0.96156 0.91807 0.94979 1.21160 1.15458 1.27025 0.91611 0.92925 1.24924 0.95164 0.94990 0.98733 1.69892 1.19246 1.31476 1.32143 0.86648 0.77517 0.78960 0.85167 1.20733 1.21303 1.20037 1.22288 1.00380 0.97173 0.86084 0.92114 0.92692 0.92766 0.94689 0.91332 0.90558 0.94853 0.92697 0.93185 0.92054 0.91252 0.92912 0.91927 0.91727 0.92843 0.92385 0.92542 0.92548 0.95619 0.92397 0.93809 0.89263 0.95287 0.93120 0.96186 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.95 37.16 0.37 -1.05 16 2 C 0.05 0.53 5.53 -3.83 -0.02 0.50 16 3 N -0.54 -6.44 4.37 -234.63 -1.02 -7.46 16 4 C 0.05 0.51 5.55 -3.83 -0.02 0.49 16 5 C -0.14 -1.35 9.95 37.15 0.37 -0.98 16 6 C 0.06 0.79 4.67 -3.82 -0.02 0.77 16 7 C -0.10 -1.32 4.58 -26.73 -0.12 -1.44 16 8 C 0.08 1.15 2.31 -67.71 -0.16 0.99 16 9 H 0.08 1.13 7.98 -51.93 -0.41 0.72 16 10 C -0.18 -2.50 8.44 37.16 0.31 -2.19 16 11 N -0.53 -9.40 4.06 -226.70 -0.92 -10.32 16 12 C 0.06 1.05 4.54 -3.83 -0.02 1.03 16 13 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 14 C -0.11 -2.59 5.02 -26.61 -0.13 -2.73 16 15 C 0.06 1.39 2.26 -91.70 -0.21 1.18 16 16 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 17 C -0.51 -14.11 8.57 -34.44 -0.30 -14.41 16 18 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.44 11.35 55.43 0.63 -24.81 16 21 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.07 1.42 4.36 -3.84 -0.02 1.40 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.57 6.96 -51.93 -0.36 0.21 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.41 8.00 -51.93 -0.42 0.00 16 30 H 0.07 0.68 6.55 -51.93 -0.34 0.34 16 31 H 0.08 0.89 5.88 -51.93 -0.31 0.58 16 32 H 0.03 0.39 8.00 -51.93 -0.42 -0.02 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.45 6.89 -51.93 -0.36 0.09 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.92 6.72 -51.93 -0.35 0.57 16 37 H 0.05 0.83 7.73 -51.93 -0.40 0.43 16 38 H 0.06 0.82 4.34 -51.93 -0.23 0.59 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.87 6.82 -51.93 -0.35 0.51 16 42 H 0.06 0.77 6.46 -51.93 -0.34 0.44 16 43 H 0.06 0.87 6.13 -51.93 -0.32 0.55 16 44 H 0.03 0.45 6.58 -51.93 -0.34 0.11 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 48 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.02 0.43 6.88 -51.93 -0.36 0.07 16 51 H 0.06 1.18 8.01 -51.93 -0.42 0.77 16 LS Contribution 371.32 15.07 5.60 5.60 Total: -1.00 -27.43 371.32 -10.75 -38.18 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -9.80 Total: -0.28 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -0.21 Total: -17.21 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -1.31 Total: -42.59 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.43 -10.75 -38.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255963503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.788 kcal (2) G-P(sol) polarization free energy of solvation -27.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds