Wall clock time and date at job start Tue Mar 31 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46894 * 109.47383 * 2 1 4 4 C 1.46903 * 111.00045 * 300.05993 * 3 2 1 5 5 C 1.53006 * 109.47147 * 288.71865 * 4 3 2 6 6 C 1.46902 * 110.99955 * 64.01141 * 3 2 1 7 7 C 1.52997 * 109.47250 * 66.04907 * 6 3 2 8 8 C 1.52999 * 109.47333 * 179.97438 * 7 6 3 9 9 H 1.09005 * 109.46711 * 54.73574 * 8 7 6 10 10 C 1.52998 * 109.47272 * 174.73652 * 8 7 6 11 11 N 1.46895 * 109.47015 * 294.74058 * 8 7 6 12 12 C 1.46849 * 111.00155 * 293.18126 * 11 8 7 13 13 C 1.53037 * 109.52339 * 174.16265 * 12 11 8 14 14 C 1.53117 * 109.27784 * 59.18220 * 13 12 11 15 15 C 1.53114 * 109.16050 * 302.34253 * 14 13 12 16 16 H 1.08996 * 109.53860 * 297.69735 * 15 14 13 17 17 C 1.50706 * 109.50497 * 177.59828 * 15 14 13 18 18 H 1.08003 * 119.99454 * 240.19852 * 17 15 14 19 19 C 1.37873 * 119.99904 * 60.19305 * 17 15 14 20 20 N 1.31508 * 119.99994 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 119.99700 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46918 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.47174 * 300.00168 * 21 19 17 24 24 H 1.48495 * 109.47248 * 60.00241 * 21 19 17 25 25 C 1.46853 * 110.99825 * 168.97455 * 11 8 7 26 26 H 1.09005 * 109.46748 * 185.74775 * 1 2 3 27 27 H 1.08999 * 109.46838 * 305.74392 * 1 2 3 28 28 H 1.08993 * 109.46990 * 65.74697 * 1 2 3 29 29 H 1.08998 * 109.47192 * 239.99729 * 2 1 3 30 30 H 1.09005 * 109.47290 * 120.00257 * 2 1 3 31 31 H 1.09006 * 109.47028 * 48.71442 * 4 3 2 32 32 H 1.08995 * 109.47522 * 168.71746 * 4 3 2 33 33 H 1.08996 * 109.46553 * 305.55208 * 5 4 3 34 34 H 1.08994 * 109.46983 * 65.55045 * 5 4 3 35 35 H 1.08993 * 109.47147 * 185.55082 * 5 4 3 36 36 H 1.09001 * 109.47107 * 306.04652 * 6 3 2 37 37 H 1.08999 * 109.46938 * 186.05079 * 6 3 2 38 38 H 1.09006 * 109.46834 * 59.99886 * 7 6 3 39 39 H 1.08993 * 109.47070 * 300.00319 * 7 6 3 40 40 H 1.08997 * 109.47475 * 180.02562 * 10 8 7 41 41 H 1.08998 * 109.47189 * 300.00467 * 10 8 7 42 42 H 1.09001 * 109.46602 * 60.00244 * 10 8 7 43 43 H 1.08996 * 109.46012 * 294.18001 * 12 11 8 44 44 H 1.09003 * 109.45838 * 54.14435 * 12 11 8 45 45 H 1.09003 * 109.49918 * 179.11762 * 13 12 11 46 46 H 1.08990 * 109.50245 * 299.23720 * 13 12 11 47 47 H 1.08996 * 109.52147 * 182.43946 * 14 13 12 48 48 H 1.08998 * 109.52206 * 62.24838 * 14 13 12 49 49 H 0.97010 * 119.99957 * 179.97438 * 20 19 17 50 50 H 1.08995 * 109.46159 * 65.81858 * 25 11 8 51 51 H 1.09003 * 109.45484 * 305.84772 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5476 2.1103 -1.1870 5 6 2.2761 1.5881 -2.4271 6 6 1.6287 2.0816 1.2328 7 6 2.3411 1.4437 2.4270 8 6 1.9343 2.1696 3.7109 9 1 0.8478 2.1715 3.7985 10 6 2.5421 1.4514 4.9174 11 7 2.4243 3.5538 3.6670 12 6 3.8915 3.5943 3.7117 13 6 4.3694 5.0352 3.5180 14 6 3.7820 5.9157 4.6245 15 6 2.2545 5.8178 4.5868 16 1 1.8883 6.1964 3.6326 17 6 1.6700 6.6351 5.7100 18 1 1.0620 6.1586 6.4648 19 6 1.9116 7.9910 5.7740 20 7 2.6517 8.5712 4.8546 21 14 1.1878 9.0040 7.1667 22 1 1.5920 10.4241 7.0077 23 1 -0.2935 8.9046 7.1329 24 1 1.6890 8.4886 8.4660 25 6 1.8378 4.3542 4.7495 26 1 -0.3633 -1.0226 0.1029 27 1 -0.3633 0.6003 0.8341 28 1 -0.3633 0.4221 -0.9369 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 0.4748 1.9562 -1.3041 32 1 1.7509 3.1744 -1.0673 33 1 3.3527 1.6513 -2.2693 34 1 1.9950 0.5499 -2.6033 35 1 1.9995 2.1912 -3.2918 36 1 0.5500 2.0023 1.3684 37 1 1.9095 3.1323 1.1610 38 1 3.4198 1.5230 2.2914 39 1 2.0603 0.3930 2.4988 40 1 2.2519 1.9683 5.8321 41 1 2.1785 0.4244 4.9499 42 1 3.6286 1.4497 4.8297 43 1 4.2358 3.2242 4.6773 44 1 4.2965 2.9674 2.9172 45 1 5.4579 5.0672 3.5669 46 1 4.0373 5.4013 2.5467 47 1 4.0847 6.9506 4.4656 48 1 4.1452 5.5736 5.5935 49 1 2.8213 9.5252 4.8994 50 1 2.1917 3.9805 5.7103 51 1 0.7511 4.2793 4.7087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255963504.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:24 Heat of formation + Delta-G solvation = -10.670913 kcal Electronic energy + Delta-G solvation = -23918.435119 eV Core-core repulsion = 20851.971373 eV Total energy + Delta-G solvation = -3066.463746 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.16115 -38.10377 -34.90405 -32.52923 -31.56514 -30.77798 -29.83796 -28.97561 -27.34269 -24.92385 -24.33928 -23.57295 -22.19594 -21.58694 -19.80745 -19.36550 -18.22166 -16.48770 -16.11757 -15.97576 -15.32231 -14.65890 -14.26534 -14.22721 -13.81398 -13.79053 -13.36726 -13.12059 -12.91652 -12.76703 -12.49742 -12.27346 -12.16117 -11.98589 -11.92563 -11.58564 -11.55328 -11.27810 -11.26326 -10.91570 -10.86959 -10.77467 -10.72619 -10.54759 -10.38552 -10.16833 -9.95008 -9.75045 -9.40601 -8.93586 -8.65398 -8.25929 -8.20800 -7.50877 -5.93597 -3.99652 3.34008 3.38760 3.41129 3.95430 4.42226 4.61107 4.85409 4.96581 5.11755 5.17245 5.22573 5.32881 5.36040 5.36381 5.42582 5.48972 5.55050 5.61011 5.65069 5.76963 5.81088 5.88641 5.91163 5.96215 5.99887 6.01969 6.04326 6.07516 6.19425 6.20949 6.31444 6.40204 6.45260 6.51036 6.59534 6.60140 6.81669 6.84508 7.04920 7.18079 7.19150 7.29348 7.47950 7.76846 7.80664 7.93445 8.14456 8.23058 8.53347 9.04419 9.64362 11.12216 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.021784 B = 0.003772 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.021471 B = 7420.399980 C = 7706.216752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 N -0.538 5.538 4 C 0.044 3.956 5 C -0.145 4.145 6 C 0.059 3.941 7 C -0.102 4.102 8 C 0.079 3.921 9 H 0.073 0.927 10 C -0.183 4.183 11 N -0.528 5.528 12 C 0.060 3.940 13 C -0.117 4.117 14 C -0.109 4.109 15 C 0.056 3.944 16 H 0.033 0.967 17 C -0.515 4.515 18 H 0.052 0.948 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.889 3.111 22 H -0.288 1.288 23 H -0.278 1.278 24 H -0.279 1.279 25 C 0.068 3.932 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.032 0.968 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.024 0.976 44 H 0.061 0.939 45 H 0.043 0.957 46 H 0.059 0.941 47 H 0.089 0.911 48 H 0.028 0.972 49 H 0.259 0.741 50 H 0.019 0.981 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.634 -16.070 -9.327 18.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.082 4.082 3 N -0.261 5.261 4 C -0.083 4.083 5 C -0.203 4.203 6 C -0.069 4.069 7 C -0.140 4.140 8 C -0.031 4.031 9 H 0.092 0.908 10 C -0.242 4.242 11 N -0.252 5.252 12 C -0.068 4.068 13 C -0.155 4.155 14 C -0.147 4.147 15 C 0.037 3.963 16 H 0.051 0.949 17 C -0.554 4.554 18 H 0.070 0.930 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.717 3.283 22 H -0.213 1.213 23 H -0.204 1.204 24 H -0.204 1.204 25 C -0.059 4.059 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.043 0.957 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.107 0.893 48 H 0.047 0.953 49 H 0.069 0.931 50 H 0.037 0.963 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.193 -15.678 -9.851 18.517 hybrid contribution -1.063 0.218 1.674 1.995 sum -1.256 -15.460 -8.177 17.534 Atomic orbital electron populations 1.22429 0.98666 1.02052 1.02165 1.22180 0.92629 0.91076 1.02362 1.62286 1.59364 1.01997 1.02480 1.22119 0.97210 0.98621 0.90400 1.21754 1.01509 1.00489 0.96549 1.22126 0.97201 0.99463 0.88072 1.21604 1.01358 0.97788 0.93227 1.21675 0.99260 0.88940 0.93195 0.90846 1.22436 1.01650 1.00328 0.99787 1.62200 1.06963 1.08535 1.47499 1.22071 0.88104 0.97926 0.98688 1.21667 0.97980 0.94577 1.01238 1.21632 0.98350 1.00548 0.94216 1.18641 0.92026 0.88209 0.97394 0.94915 1.21128 1.31215 0.92814 1.10215 0.93023 1.24920 0.95178 0.97790 0.95884 1.69886 1.38263 1.10635 1.33906 0.86716 0.79570 0.79222 0.82796 1.21337 1.20357 1.20428 1.22293 0.97603 0.96166 0.89878 0.92455 0.92053 0.92582 0.91144 0.90702 0.94546 0.90744 0.91867 0.93230 0.92656 0.94986 0.89116 0.91146 0.92578 0.92410 0.93014 0.92381 0.95736 0.92092 0.93799 0.92247 0.89312 0.95340 0.93063 0.96254 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 9.23 37.16 0.34 -1.47 16 2 C 0.05 0.45 5.71 -3.83 -0.02 0.43 16 3 N -0.54 -6.31 4.67 -234.62 -1.10 -7.41 16 4 C 0.04 0.48 5.52 -3.82 -0.02 0.46 16 5 C -0.15 -1.35 9.83 37.16 0.37 -0.98 16 6 C 0.06 0.77 4.67 -3.82 -0.02 0.75 16 7 C -0.10 -1.30 4.56 -26.73 -0.12 -1.42 16 8 C 0.08 1.16 2.30 -67.72 -0.16 1.00 16 9 H 0.07 1.09 7.97 -51.93 -0.41 0.68 16 10 C -0.18 -2.50 8.43 37.16 0.31 -2.19 16 11 N -0.53 -9.42 4.06 -226.69 -0.92 -10.34 16 12 C 0.06 1.05 4.52 -3.83 -0.02 1.03 16 13 C -0.12 -2.31 6.09 -26.65 -0.16 -2.47 16 14 C -0.11 -2.61 5.03 -26.61 -0.13 -2.74 16 15 C 0.06 1.40 2.26 -91.69 -0.21 1.20 16 16 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 17 C -0.51 -14.17 8.56 -34.44 -0.29 -14.47 16 18 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -25.46 11.36 55.43 0.63 -24.83 16 21 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.07 1.42 4.37 -3.83 -0.02 1.41 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.64 6.12 -51.93 -0.32 0.32 16 28 H 0.06 0.52 6.48 -51.93 -0.34 0.18 16 29 H 0.07 0.65 6.79 -51.93 -0.35 0.30 16 30 H 0.07 0.74 6.30 -51.93 -0.33 0.41 16 31 H 0.04 0.39 5.90 -51.93 -0.31 0.08 16 32 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.43 6.98 -51.93 -0.36 0.06 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.03 0.42 6.03 -51.93 -0.31 0.11 16 37 H 0.09 1.41 7.49 -51.93 -0.39 1.02 16 38 H 0.07 0.97 6.25 -51.93 -0.32 0.64 16 39 H 0.06 0.64 6.47 -51.93 -0.34 0.31 16 40 H 0.06 0.86 6.85 -51.93 -0.36 0.51 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.80 6.45 -51.93 -0.34 0.46 16 43 H 0.02 0.44 6.57 -51.93 -0.34 0.09 16 44 H 0.06 0.97 6.16 -51.93 -0.32 0.65 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 47 H 0.09 2.37 6.17 -51.93 -0.32 2.05 16 48 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 50 H 0.02 0.41 6.91 -51.93 -0.36 0.06 16 51 H 0.05 1.17 8.00 -51.93 -0.42 0.75 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -27.43 366.24 -10.69 -38.11 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -9.56 Total: 0.39 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -0.24 Total: -17.80 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: -1.39 Total: -42.58 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.43 -10.69 -38.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255963504.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.443 kcal (2) G-P(sol) polarization free energy of solvation -27.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds