Wall clock time and date at job start Tue Mar 31 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46906 * 109.46682 * 2 1 4 4 C 1.46896 * 111.00225 * 298.10596 * 3 2 1 5 5 C 1.52999 * 109.47528 * 292.13912 * 4 3 2 6 6 C 1.46892 * 111.00210 * 62.06777 * 3 2 1 7 7 C 1.53004 * 109.47451 * 66.04444 * 6 3 2 8 8 C 1.52999 * 109.47395 * 184.57843 * 7 6 3 9 9 H 1.08996 * 109.47315 * 56.50409 * 8 7 6 10 10 C 1.53011 * 109.46715 * 296.51258 * 8 7 6 11 11 N 1.46894 * 109.47303 * 176.51196 * 8 7 6 12 12 C 1.46849 * 110.99998 * 181.13895 * 11 8 7 13 13 C 1.53038 * 109.51972 * 185.84077 * 12 11 8 14 14 C 1.53118 * 109.27970 * 300.81763 * 13 12 11 15 15 C 1.50700 * 109.52464 * 177.56340 * 14 13 12 16 16 H 1.08004 * 119.99763 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00221 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99696 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 119.99706 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47385 * 90.00218 * 19 17 15 21 21 H 1.48504 * 109.47064 * 210.00356 * 19 17 15 22 22 H 1.48495 * 109.47371 * 329.99846 * 19 17 15 23 23 C 1.53119 * 109.15812 * 57.66149 * 14 13 12 24 24 C 1.46842 * 110.99979 * 305.35268 * 11 8 7 25 25 H 1.08995 * 109.46929 * 179.84259 * 1 2 3 26 26 H 1.08996 * 109.47085 * 299.84844 * 1 2 3 27 27 H 1.08999 * 109.46488 * 59.84550 * 1 2 3 28 28 H 1.08995 * 109.47713 * 240.00189 * 2 1 3 29 29 H 1.09000 * 109.47042 * 119.99603 * 2 1 3 30 30 H 1.09011 * 109.46626 * 52.13429 * 4 3 2 31 31 H 1.08997 * 109.47199 * 172.13284 * 4 3 2 32 32 H 1.08996 * 109.47522 * 186.40441 * 5 4 3 33 33 H 1.08998 * 109.46940 * 306.40905 * 5 4 3 34 34 H 1.09001 * 109.46898 * 66.40230 * 5 4 3 35 35 H 1.08997 * 109.47461 * 306.04498 * 6 3 2 36 36 H 1.08996 * 109.47397 * 186.04094 * 6 3 2 37 37 H 1.08995 * 109.47143 * 64.57504 * 7 6 3 38 38 H 1.09001 * 109.46804 * 304.57564 * 7 6 3 39 39 H 1.08998 * 109.46920 * 59.99748 * 10 8 7 40 40 H 1.09000 * 109.46670 * 179.97438 * 10 8 7 41 41 H 1.09003 * 109.46588 * 299.99976 * 10 8 7 42 42 H 1.08993 * 109.45981 * 65.82755 * 12 11 8 43 43 H 1.08999 * 109.45199 * 305.84715 * 12 11 8 44 44 H 1.09007 * 109.50240 * 180.88283 * 13 12 11 45 45 H 1.08998 * 109.50551 * 60.76175 * 13 12 11 46 46 H 1.09000 * 109.52751 * 297.75379 * 14 13 12 47 47 H 0.97001 * 119.99549 * 179.97438 * 18 17 15 48 48 H 1.08997 * 109.50684 * 62.28531 * 23 14 13 49 49 H 1.09004 * 109.50513 * 182.40383 * 23 14 13 50 50 H 1.08998 * 109.46333 * 294.17468 * 24 11 8 51 51 H 1.09000 * 109.46342 * 54.14594 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5859 2.0968 -1.2097 5 6 2.2909 1.5033 -2.4310 6 6 1.5894 2.0955 1.2116 7 6 2.2632 1.4713 2.4353 8 6 1.7289 2.1353 3.7059 9 1 0.6436 2.0392 3.7373 10 6 2.1097 3.6173 3.7056 11 7 2.3130 1.4799 4.8837 12 6 1.8010 2.0747 6.1249 13 6 2.5363 1.4697 7.3230 14 6 2.3215 -0.0463 7.3350 15 6 3.0922 -0.6551 8.4781 16 1 3.6768 -0.0246 9.1316 17 6 3.0510 -2.0170 8.6895 18 7 3.7239 -2.5482 9.6867 19 14 2.0393 -3.1073 7.5595 20 1 2.8818 -3.5598 6.4234 21 1 1.5530 -4.2888 8.3165 22 1 0.8786 -2.3403 7.0402 23 6 2.8188 -0.6348 6.0118 24 6 2.0754 0.0312 4.8516 25 1 -0.3633 -1.0276 -0.0028 26 1 -0.3633 0.5115 0.8913 27 1 -0.3632 0.5162 -0.8886 28 1 1.8935 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.5072 1.9915 -1.3260 31 1 1.8405 3.1529 -1.1208 32 1 2.0580 2.1019 -3.3116 33 1 3.3681 1.5048 -2.2651 34 1 1.9487 0.4801 -2.5864 35 1 0.5070 2.0175 1.3136 36 1 1.8726 3.1454 1.1370 37 1 3.3409 1.6213 2.3726 38 1 2.0460 0.4036 2.4645 39 1 1.6763 4.1036 2.8317 40 1 1.7286 4.0905 4.6106 41 1 3.1950 3.7135 3.6741 42 1 0.7341 1.8701 6.2125 43 1 1.9639 3.1522 6.1052 44 1 2.1452 1.8999 8.2451 45 1 3.6017 1.6857 7.2431 46 1 1.2599 -0.2630 7.4540 47 1 3.6946 -3.5063 9.8357 48 1 3.8886 -0.4519 5.9113 49 1 2.6296 -1.7082 5.9969 50 1 1.0071 -0.1638 4.9451 51 1 2.4374 -0.3754 3.9072 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255964273.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:46 Heat of formation + Delta-G solvation = -0.457161 kcal Electronic energy + Delta-G solvation = -23769.198959 eV Core-core repulsion = 20703.178114 eV Total energy + Delta-G solvation = -3066.020845 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.37069 -38.34833 -35.30411 -32.70805 -31.70262 -31.00418 -30.42274 -29.40224 -27.32545 -25.70256 -24.61851 -23.35561 -21.95947 -21.71444 -20.09235 -19.55012 -18.80721 -16.76903 -16.51653 -16.38989 -15.70392 -14.83211 -14.54280 -14.28732 -14.23767 -13.83875 -13.52810 -13.30955 -13.00522 -12.91997 -12.78586 -12.63045 -12.45722 -12.33969 -12.15004 -11.81295 -11.71079 -11.52280 -11.41178 -11.30033 -11.04176 -10.95718 -10.83637 -10.59948 -10.49570 -10.31460 -10.02724 -9.78617 -9.54216 -8.98742 -8.86113 -8.47118 -8.45719 -7.86195 -6.02143 -3.99929 3.29701 3.39456 3.41885 3.66647 4.22932 4.45279 4.66821 4.72267 4.93699 5.00638 5.02429 5.04668 5.16215 5.22308 5.26944 5.29720 5.34734 5.43180 5.44754 5.50554 5.53907 5.67860 5.72406 5.74574 5.78177 5.86885 5.87673 5.90823 5.96423 5.97499 6.04103 6.05442 6.17774 6.25779 6.30221 6.41192 6.45289 6.53041 6.80566 6.89095 6.90764 6.92441 7.00788 7.28442 7.52012 7.61386 7.71300 7.84750 8.59425 9.02878 9.61237 11.11542 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.003936 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.114961 B = 7112.891148 C = 7992.737087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.043 3.957 3 N -0.535 5.535 4 C 0.045 3.955 5 C -0.148 4.148 6 C 0.053 3.947 7 C -0.112 4.112 8 C 0.082 3.918 9 H 0.030 0.970 10 C -0.144 4.144 11 N -0.527 5.527 12 C 0.054 3.946 13 C -0.096 4.096 14 C 0.013 3.987 15 C -0.508 4.508 16 H 0.073 0.927 17 C 0.067 3.933 18 N -0.904 5.904 19 Si 0.887 3.113 20 H -0.279 1.279 21 H -0.299 1.299 22 H -0.268 1.268 23 C -0.115 4.115 24 C 0.053 3.947 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.022 0.978 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.020 0.980 47 H 0.262 0.738 48 H 0.069 0.931 49 H 0.046 0.954 50 H 0.021 0.979 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.516 9.788 -21.818 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.085 4.085 3 N -0.259 5.259 4 C -0.083 4.083 5 C -0.206 4.206 6 C -0.075 4.075 7 C -0.150 4.150 8 C -0.027 4.027 9 H 0.048 0.952 10 C -0.202 4.202 11 N -0.252 5.252 12 C -0.073 4.073 13 C -0.133 4.133 14 C -0.006 4.006 15 C -0.546 4.546 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.543 5.543 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.227 1.227 22 H -0.193 1.193 23 C -0.153 4.153 24 C -0.075 4.075 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.038 0.962 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.064 0.936 50 H 0.039 0.961 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.445 9.695 -21.734 24.413 hybrid contribution -2.348 -0.934 -0.517 2.579 sum -7.792 8.761 -22.251 25.151 Atomic orbital electron populations 1.22418 0.98497 1.02433 1.01919 1.22230 0.92745 0.90438 1.03052 1.62259 1.59493 1.02294 1.01825 1.22115 0.97599 0.98218 0.90320 1.21778 1.01681 1.00641 0.96456 1.22211 0.97540 0.98162 0.89614 1.21716 1.01738 0.99947 0.91601 1.21544 0.95820 0.94580 0.90794 0.95176 1.21913 1.02518 0.94705 1.01052 1.61947 1.58556 1.03515 1.01205 1.22235 0.96405 0.98381 0.90284 1.21488 1.00138 0.97214 0.94506 1.19180 0.96328 0.92072 0.92997 1.21080 1.29147 0.92718 1.11674 0.90889 1.25028 0.95104 0.98104 0.95104 1.69906 1.42211 1.11925 1.30228 0.86845 0.81202 0.79826 0.80330 1.20553 1.22660 1.19328 1.22004 1.00702 0.97628 0.94948 1.22255 0.97799 0.87575 0.99865 0.92049 0.92302 0.92569 0.90658 0.90214 0.94575 0.91078 0.92536 0.91691 0.92894 0.94705 0.90721 0.90257 0.91402 0.92771 0.92602 0.91625 0.95942 0.91485 0.92530 0.91805 0.96223 0.92790 0.91267 0.93570 0.96093 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.72 9.26 37.16 0.34 -1.37 16 2 C 0.04 0.41 5.67 -3.82 -0.02 0.39 16 3 N -0.54 -5.31 4.70 -234.63 -1.10 -6.42 16 4 C 0.05 0.38 5.49 -3.83 -0.02 0.35 16 5 C -0.15 -1.09 9.72 37.16 0.36 -0.73 16 6 C 0.05 0.54 4.35 -3.83 -0.02 0.52 16 7 C -0.11 -1.35 4.45 -26.73 -0.12 -1.47 16 8 C 0.08 1.08 2.17 -67.71 -0.15 0.93 16 9 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 10 C -0.14 -1.64 8.73 37.16 0.32 -1.32 16 11 N -0.53 -8.71 4.52 -226.69 -1.03 -9.74 16 12 C 0.05 0.92 5.24 -3.83 -0.02 0.90 16 13 C -0.10 -1.94 5.32 -26.65 -0.14 -2.08 16 14 C 0.01 0.31 1.75 -91.65 -0.16 0.15 16 15 C -0.51 -14.46 9.14 -34.44 -0.31 -14.77 16 16 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 17 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 18 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 19 Si 0.89 22.36 24.37 -169.99 -4.14 18.21 16 20 H -0.28 -6.82 6.89 56.52 0.39 -6.43 16 21 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 22 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 23 C -0.12 -2.53 4.84 -26.65 -0.13 -2.66 16 24 C 0.05 0.95 5.11 -3.83 -0.02 0.93 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.57 6.33 -51.93 -0.33 0.24 16 27 H 0.06 0.46 6.27 -51.93 -0.33 0.14 16 28 H 0.08 0.67 6.59 -51.93 -0.34 0.33 16 29 H 0.08 0.84 6.29 -51.93 -0.33 0.52 16 30 H 0.04 0.29 5.98 -51.92 -0.31 -0.02 16 31 H 0.07 0.56 7.89 -51.93 -0.41 0.15 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.39 6.87 -51.93 -0.36 0.03 16 35 H 0.03 0.36 6.07 -51.93 -0.32 0.04 16 36 H 0.07 0.72 6.52 -51.93 -0.34 0.38 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.88 4.18 -51.93 -0.22 0.66 16 39 H 0.05 0.51 6.62 -51.93 -0.34 0.17 16 40 H 0.06 0.64 6.31 -51.93 -0.33 0.31 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 1.00 6.04 -51.93 -0.31 0.69 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 46 H 0.02 0.49 7.19 -51.93 -0.37 0.11 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 48 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 49 H 0.05 1.07 3.38 -51.93 -0.18 0.89 16 50 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.07 1.10 5.81 -51.93 -0.30 0.80 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -29.94 358.97 -9.62 -39.56 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -9.36 Total: -1.36 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -0.18 Total: -18.34 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: -1.35 Total: -43.48 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.14 Total: 18.21 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.94 -9.62 -39.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255964273.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.099 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds