Wall clock time and date at job start Tue Mar 31 2020 06:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46905 * 109.47376 * 2 1 4 4 C 1.46901 * 110.99790 * 66.04709 * 3 2 1 5 5 C 1.53004 * 109.46792 * 199.59172 * 4 3 2 6 6 C 1.46900 * 111.00053 * 190.00301 * 3 2 1 7 7 C 1.52992 * 109.47165 * 75.74648 * 6 3 2 8 8 C 1.53002 * 109.47234 * 174.91101 * 7 6 3 9 9 H 1.09003 * 109.47428 * 54.99617 * 8 7 6 10 10 C 1.52998 * 109.47368 * 175.00289 * 8 7 6 11 11 N 1.46904 * 109.46812 * 295.00158 * 8 7 6 12 12 C 1.46850 * 110.99738 * 299.20846 * 11 8 7 13 13 C 1.53037 * 109.52196 * 174.16292 * 12 11 8 14 14 C 1.53120 * 109.28280 * 59.17698 * 13 12 11 15 15 C 1.50694 * 109.52636 * 182.44022 * 14 13 12 16 16 H 1.08001 * 120.00097 * 119.68022 * 15 14 13 17 17 C 1.37877 * 119.99921 * 299.68273 * 15 14 13 18 18 N 1.31514 * 120.00040 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99819 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.46943 * 90.00228 * 19 17 15 21 21 H 1.48503 * 109.46811 * 210.00171 * 19 17 15 22 22 H 1.48499 * 109.47042 * 330.00115 * 19 17 15 23 23 C 1.53121 * 109.15763 * 302.34922 * 14 13 12 24 24 C 1.46842 * 111.00159 * 174.99823 * 11 8 7 25 25 H 1.09006 * 109.46676 * 300.00105 * 1 2 3 26 26 H 1.08997 * 109.47049 * 59.99747 * 1 2 3 27 27 H 1.08996 * 109.47078 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47271 * 239.99713 * 2 1 3 29 29 H 1.09004 * 109.46831 * 119.99897 * 2 1 3 30 30 H 1.08997 * 109.47024 * 319.58492 * 4 3 2 31 31 H 1.08990 * 109.47107 * 79.59235 * 4 3 2 32 32 H 1.08998 * 109.46942 * 174.84183 * 5 4 3 33 33 H 1.08998 * 109.47231 * 294.84201 * 5 4 3 34 34 H 1.09000 * 109.46988 * 54.83725 * 5 4 3 35 35 H 1.09003 * 109.46616 * 315.74548 * 6 3 2 36 36 H 1.09000 * 109.46626 * 195.75083 * 6 3 2 37 37 H 1.09001 * 109.47255 * 294.90820 * 7 6 3 38 38 H 1.08999 * 109.47259 * 54.90821 * 7 6 3 39 39 H 1.08997 * 109.47508 * 59.99757 * 10 8 7 40 40 H 1.08999 * 109.46918 * 180.02562 * 10 8 7 41 41 H 1.08998 * 109.46665 * 299.99158 * 10 8 7 42 42 H 1.09001 * 109.46480 * 294.17582 * 12 11 8 43 43 H 1.08997 * 109.46440 * 54.14750 * 12 11 8 44 44 H 1.08997 * 109.50085 * 299.23484 * 13 12 11 45 45 H 1.09000 * 109.50485 * 179.12048 * 13 12 11 46 46 H 1.09000 * 109.51883 * 62.24585 * 14 13 12 47 47 H 0.97002 * 119.99881 * 179.97438 * 18 17 15 48 48 H 1.08997 * 109.50400 * 297.70701 * 23 14 13 49 49 H 1.09000 * 109.50153 * 177.59085 * 23 14 13 50 50 H 1.09002 * 109.46569 * 305.85789 * 24 11 8 51 51 H 1.09005 * 109.46564 * 65.82048 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6703 2.0669 1.2533 5 6 1.7416 3.5813 1.0470 6 6 3.4686 1.4311 -0.2382 7 6 3.7503 1.1737 -1.7198 8 6 5.2459 1.3467 -1.9922 9 1 5.8142 0.7007 -1.3231 10 6 5.5470 0.9687 -3.4438 11 7 5.6268 2.7467 -1.7616 12 6 4.8930 3.6466 -2.6607 13 6 5.2044 5.0997 -2.2956 14 6 6.7114 5.3407 -2.4203 15 6 7.0317 6.7532 -2.0044 16 1 7.6985 6.9337 -1.1742 17 6 6.4736 7.8153 -2.6838 18 7 5.6612 7.5955 -3.6945 19 14 6.8702 9.5663 -2.1679 20 1 8.0658 10.0419 -2.9089 21 1 5.7145 10.4467 -2.4755 22 1 7.1453 9.6021 -0.7090 23 6 7.4543 4.3584 -1.5105 24 6 7.0777 2.9267 -1.8983 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.6590 1.7878 1.5491 31 1 2.3714 1.7733 2.0344 32 1 1.3946 4.0874 1.9478 33 1 2.7718 3.8718 0.8410 34 1 1.1094 3.8634 0.2051 35 1 3.9601 0.6665 0.3633 36 1 3.8513 2.4133 0.0392 37 1 3.4496 0.1577 -1.9757 38 1 3.1862 1.8829 -2.3255 39 1 4.9787 1.6148 -4.1130 40 1 6.6126 1.0916 -3.6377 41 1 5.2645 -0.0700 -3.6148 42 1 5.1964 3.4578 -3.6905 43 1 3.8226 3.4679 -2.5591 44 1 4.8885 5.2931 -1.2705 45 1 4.6719 5.7673 -2.9730 46 1 7.0208 5.1851 -3.4538 47 1 5.2683 8.3427 -4.1722 48 1 7.1739 4.5400 -0.4730 49 1 8.5292 4.4962 -1.6270 50 1 7.5941 2.2251 -1.2431 51 1 7.3710 2.7413 -2.9317 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255964274.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:48 Heat of formation + Delta-G solvation = -12.697063 kcal Electronic energy + Delta-G solvation = -24050.198918 eV Core-core repulsion = 20983.647311 eV Total energy + Delta-G solvation = -3066.551607 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.09994 -37.86406 -34.95659 -32.46462 -31.78010 -30.76630 -29.75435 -29.08539 -27.35202 -25.44207 -23.27703 -23.01038 -22.32965 -21.78325 -20.24730 -19.60820 -18.17423 -16.35287 -15.91933 -15.59240 -15.39196 -14.72870 -14.48868 -14.17791 -13.87950 -13.65785 -13.42632 -13.35632 -12.88481 -12.59342 -12.39783 -12.23019 -12.00341 -11.87949 -11.67334 -11.59978 -11.48311 -11.38478 -11.25968 -10.92779 -10.86863 -10.64709 -10.59716 -10.42473 -10.32545 -10.24224 -10.05029 -9.82338 -9.33256 -8.87919 -8.60810 -8.25009 -8.22753 -7.58246 -5.91693 -3.96745 3.34406 3.41200 3.44759 3.91867 4.48464 4.52123 4.88956 5.02732 5.09437 5.18124 5.31708 5.34515 5.38206 5.39461 5.47318 5.59179 5.60663 5.66580 5.72037 5.81676 5.85467 5.87525 5.90803 5.97899 6.06868 6.08354 6.10012 6.15522 6.16513 6.31766 6.37249 6.40912 6.46099 6.48336 6.53477 6.72363 6.78780 6.94769 7.16005 7.21395 7.22018 7.26942 7.54266 7.71833 7.82026 7.92419 8.12851 8.24501 8.55152 9.06982 9.67327 11.14304 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017816 B = 0.004376 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.284344 B = 6396.970276 C = 7340.858866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 N -0.540 5.540 4 C 0.050 3.950 5 C -0.148 4.148 6 C 0.061 3.939 7 C -0.103 4.103 8 C 0.079 3.921 9 H 0.071 0.929 10 C -0.184 4.184 11 N -0.525 5.525 12 C 0.053 3.947 13 C -0.102 4.102 14 C 0.049 3.951 15 C -0.510 4.510 16 H 0.053 0.947 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.888 3.112 20 H -0.283 1.283 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.106 4.106 24 C 0.059 3.941 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.025 0.975 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.023 0.977 43 H 0.061 0.939 44 H 0.041 0.959 45 H 0.090 0.910 46 H 0.018 0.982 47 H 0.258 0.742 48 H 0.055 0.945 49 H 0.046 0.954 50 H 0.053 0.947 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.238 -15.384 5.887 17.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.079 4.079 3 N -0.265 5.265 4 C -0.078 4.078 5 C -0.206 4.206 6 C -0.067 4.067 7 C -0.141 4.141 8 C -0.031 4.031 9 H 0.089 0.911 10 C -0.243 4.243 11 N -0.250 5.250 12 C -0.074 4.074 13 C -0.140 4.140 14 C 0.030 3.970 15 C -0.548 4.548 16 H 0.071 0.929 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.716 3.284 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.143 4.143 24 C -0.068 4.068 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.041 0.959 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.108 0.892 46 H 0.037 0.963 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.072 0.928 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.710 -14.905 5.868 17.777 hybrid contribution 0.858 0.269 -0.005 0.899 sum -6.852 -14.636 5.863 17.191 Atomic orbital electron populations 1.21827 0.95280 1.01084 1.02470 1.22085 0.95753 0.89687 1.00380 1.62067 1.14989 1.14833 1.34577 1.22103 1.00131 0.95473 0.90086 1.21776 1.03112 0.94238 1.01468 1.22118 0.85922 1.02534 0.96097 1.21618 0.95024 1.00948 0.96540 1.21672 0.95801 0.91036 0.94552 0.91095 1.22441 1.01886 1.01113 0.98885 1.62220 1.06037 1.03010 1.53688 1.22336 0.96882 0.95151 0.93042 1.21626 1.00258 0.91302 1.00801 1.18668 0.91398 0.92743 0.94160 1.21218 1.27318 0.90886 1.15369 0.92887 1.24954 0.95167 0.98821 0.95002 1.69882 1.31356 1.30866 1.20958 0.86667 0.77772 0.85060 0.78915 1.20879 1.21315 1.19990 1.21667 0.98953 0.92799 1.00922 1.22104 0.87718 0.98725 0.98301 0.92761 0.91823 0.92721 0.90871 0.95523 0.91198 0.95210 0.92844 0.91902 0.91886 0.95673 0.88730 0.92756 0.90570 0.92094 0.92594 0.92978 0.95910 0.92045 0.94047 0.89203 0.96340 0.93178 0.92659 0.93480 0.92832 0.95678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.88 37.16 0.37 -0.97 16 2 C 0.05 0.51 5.50 -3.82 -0.02 0.48 16 3 N -0.54 -6.62 4.37 -234.63 -1.02 -7.64 16 4 C 0.05 0.57 5.55 -3.82 -0.02 0.55 16 5 C -0.15 -1.84 9.96 37.16 0.37 -1.47 16 6 C 0.06 0.80 4.76 -3.83 -0.02 0.78 16 7 C -0.10 -1.36 4.54 -26.73 -0.12 -1.48 16 8 C 0.08 1.11 2.35 -67.71 -0.16 0.96 16 9 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 10 C -0.18 -2.49 8.50 37.16 0.32 -2.17 16 11 N -0.53 -9.04 4.01 -226.69 -0.91 -9.95 16 12 C 0.05 1.03 4.64 -3.83 -0.02 1.01 16 13 C -0.10 -2.40 5.12 -26.65 -0.14 -2.54 16 14 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16 15 C -0.51 -14.11 8.56 -34.44 -0.29 -14.41 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 18 N -0.89 -25.58 11.37 55.43 0.63 -24.95 16 19 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.11 -2.23 5.32 -26.65 -0.14 -2.37 16 24 C 0.06 1.06 5.02 -3.84 -0.02 1.04 16 25 H 0.05 0.48 6.25 -51.93 -0.32 0.15 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.74 6.72 -51.93 -0.35 0.39 16 29 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 30 H 0.07 0.72 5.88 -51.93 -0.31 0.41 16 31 H 0.03 0.34 8.00 -51.93 -0.42 -0.07 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.89 6.89 -51.93 -0.36 0.54 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.02 0.32 8.00 -51.93 -0.42 -0.09 16 36 H 0.09 1.46 6.03 -51.93 -0.31 1.15 16 37 H 0.05 0.64 6.95 -51.93 -0.36 0.28 16 38 H 0.08 1.13 6.05 -51.93 -0.31 0.82 16 39 H 0.06 0.89 6.52 -51.93 -0.34 0.55 16 40 H 0.06 0.78 6.65 -51.93 -0.35 0.43 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.02 0.46 6.62 -51.93 -0.34 0.12 16 43 H 0.06 1.14 5.93 -51.93 -0.31 0.83 16 44 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.09 2.38 6.17 -51.93 -0.32 2.06 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 51 H 0.03 0.46 6.73 -51.93 -0.35 0.11 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -27.60 370.78 -10.70 -38.30 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -9.77 Total: 0.13 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -0.19 Total: -17.94 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -1.30 Total: -42.54 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.60 -10.70 -38.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255964274.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.599 kcal (2) G-P(sol) polarization free energy of solvation -27.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds